Wall clock time and date at job start Mon Mar 30 2020 01:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46800 * 2 1 4 4 C 1.52994 * 109.47161 * 120.00353 * 2 1 3 5 5 N 1.46504 * 109.47220 * 174.99996 * 4 2 1 6 6 C 1.46504 * 119.99704 * 269.99802 * 5 4 2 7 7 C 1.34771 * 119.99829 * 89.99889 * 5 4 2 8 8 O 1.21277 * 120.00490 * 359.97438 * 7 5 4 9 9 C 1.50706 * 119.99791 * 180.02562 * 7 5 4 10 10 H 1.09003 * 110.62112 * 321.36693 * 9 7 5 11 11 C 1.54092 * 110.56509 * 84.18775 * 9 7 5 12 12 O 1.45707 * 104.00725 * 118.57262 * 11 9 7 13 13 C 1.33768 * 109.47544 * 0.02562 * 12 11 9 14 14 O 1.21515 * 123.07086 * 180.02562 * 13 12 11 15 15 N 1.33999 * 113.85991 * 359.97438 * 13 12 11 16 16 N 1.46498 * 109.46902 * 240.00516 * 2 1 3 17 17 C 1.36938 * 120.00388 * 84.99778 * 16 2 1 18 18 H 1.07997 * 119.99554 * 359.97438 * 17 16 2 19 19 C 1.38809 * 119.99854 * 179.97438 * 17 16 2 20 20 N 1.31620 * 119.99571 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00353 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47022 * 90.00009 * 21 19 17 23 23 H 1.48498 * 109.47253 * 209.99890 * 21 19 17 24 24 H 1.48499 * 109.47056 * 330.00080 * 21 19 17 25 25 H 1.09005 * 109.47220 * 299.99945 * 1 2 3 26 26 H 1.09001 * 109.47318 * 59.99429 * 1 2 3 27 27 H 1.08996 * 109.47298 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47468 * 54.99608 * 4 2 1 29 29 H 1.09000 * 109.46963 * 294.99847 * 4 2 1 30 30 H 1.08991 * 109.46969 * 269.99515 * 6 5 4 31 31 H 1.08999 * 109.46810 * 30.00092 * 6 5 4 32 32 H 1.09006 * 109.46659 * 149.99841 * 6 5 4 33 33 H 1.08997 * 110.52567 * 237.20662 * 11 9 7 34 34 H 1.09006 * 110.52110 * 359.94326 * 11 9 7 35 35 H 0.96999 * 125.56585 * 179.97438 * 15 13 12 36 36 H 0.97005 * 119.99869 * 264.99612 * 16 2 1 37 37 H 0.96998 * 119.99896 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1258 -1.9920 0.5610 7 6 4.2675 0.1491 1.7155 8 8 3.7495 1.1142 2.2362 9 6 5.7695 0.0412 1.6547 10 1 6.0876 -0.9878 1.8226 11 6 6.2947 0.5559 0.3005 12 8 7.1495 1.6804 0.6582 13 6 7.1531 1.8329 1.9871 14 8 7.7872 2.7013 2.5532 15 7 6.3927 0.9413 2.6371 16 7 2.0182 -0.6905 -1.1962 17 6 2.1490 -0.0073 -2.3758 18 1 1.8917 1.0404 -2.4243 19 6 2.6122 -0.6616 -3.5091 20 7 2.7383 -0.0048 -4.6427 21 14 3.0578 -2.4737 -3.4249 22 1 1.8611 -3.2931 -3.7442 23 1 4.1334 -2.7651 -4.4065 24 1 3.5331 -2.8036 -2.0573 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6053 -1.7198 1.2951 29 1 1.7516 -0.1584 2.1369 30 1 4.2822 -2.7688 1.3094 31 1 3.4756 -2.3722 -0.2269 32 1 5.0851 -1.7021 0.1322 33 1 6.8727 -0.2180 -0.2043 34 1 5.4687 0.8886 -0.3282 35 1 6.2732 0.8962 3.5986 36 1 2.2490 -1.6317 -1.1527 37 1 3.0616 -0.4620 -5.4347 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700745709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:54 Heat of formation + Delta-G solvation = -104.042281 kcal Electronic energy + Delta-G solvation = -22042.268234 eV Core-core repulsion = 18627.056547 eV Total energy + Delta-G solvation = -3415.211687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.95431 -40.80971 -38.46151 -38.06117 -35.97414 -35.79268 -34.03099 -31.63429 -30.83395 -28.20326 -27.31983 -25.61397 -24.74916 -23.58871 -21.98034 -20.81865 -19.61880 -19.33474 -18.82897 -18.14433 -17.50597 -16.87313 -16.71650 -16.43782 -15.86994 -15.45037 -15.34379 -15.19897 -14.88912 -14.60592 -14.21940 -14.15801 -13.74569 -13.41659 -13.29919 -13.21371 -12.76126 -12.70593 -12.36347 -12.18105 -12.07461 -11.98764 -11.75067 -11.63840 -11.47067 -10.97338 -10.35931 -9.68669 -9.22785 -7.94386 -5.29764 1.29258 1.32234 1.37763 1.50897 1.58425 1.60966 1.91783 2.51857 2.56473 3.01667 3.20719 3.37251 3.58704 3.68249 3.92949 4.06195 4.21071 4.33151 4.35041 4.45304 4.61671 4.68547 4.73256 4.85524 4.93883 5.07819 5.24498 5.33378 5.60464 5.63169 5.83403 6.01542 6.25141 6.30559 6.85489 7.01617 7.14939 7.85846 8.11865 9.27541 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.006527 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.953333 B = 4288.687723 C = 4938.078519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.019 0.981 4 C 0.115 3.885 5 N -0.590 5.590 6 C 0.055 3.945 7 C 0.499 3.501 8 O -0.571 6.571 9 C 0.087 3.913 10 H 0.182 0.818 11 C 0.048 3.952 12 O -0.340 6.340 13 C 0.648 3.352 14 O -0.568 6.568 15 N -0.695 5.695 16 N -0.737 5.737 17 C -0.226 4.226 18 H 0.036 0.964 19 C -0.069 4.069 20 N -0.992 5.992 21 Si 0.953 3.047 22 H -0.290 1.290 23 H -0.303 1.303 24 H -0.210 1.210 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.093 0.907 35 H 0.447 0.553 36 H 0.370 0.630 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.483 -12.015 15.406 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.037 0.963 4 C -0.009 4.009 5 N -0.321 5.321 6 C -0.087 4.087 7 C 0.285 3.715 8 O -0.450 6.450 9 C -0.022 4.022 10 H 0.199 0.801 11 C -0.027 4.027 12 O -0.250 6.250 13 C 0.401 3.599 14 O -0.456 6.456 15 N -0.367 5.367 16 N -0.383 5.383 17 C -0.357 4.357 18 H 0.054 0.946 19 C -0.259 4.259 20 N -0.642 5.642 21 Si 0.779 3.221 22 H -0.217 1.217 23 H -0.230 1.230 24 H -0.133 1.133 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.183 0.817 34 H 0.112 0.888 35 H 0.292 0.708 36 H 0.206 0.794 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.676 -10.770 15.486 19.434 hybrid contribution -0.341 -0.294 -0.572 0.728 sum 4.335 -11.064 14.915 19.070 Atomic orbital electron populations 1.22223 0.96801 1.02080 1.00559 1.20743 0.93283 0.94908 0.86416 0.96253 1.21847 0.78963 1.02767 0.97296 1.47723 1.06726 1.21471 1.56198 1.22471 0.99576 0.87471 0.99151 1.20950 0.89710 0.82327 0.78513 1.90734 1.75315 1.32281 1.46661 1.22612 0.90302 0.99772 0.89538 0.80083 1.24645 0.94907 0.87899 0.95230 1.87282 1.64843 1.51239 1.21591 1.18601 0.79288 0.81240 0.80792 1.91025 1.49583 1.37187 1.67806 1.45580 1.47778 1.32619 1.10758 1.42610 1.80026 1.09436 1.06197 1.18853 1.35376 0.93740 0.87702 0.94569 1.25617 1.02230 1.03378 0.94691 1.69940 1.54667 1.38190 1.01410 0.85553 0.77347 0.79234 0.79923 1.21740 1.22999 1.13280 0.91486 0.95331 0.91469 0.87138 0.89362 0.87907 0.91133 0.89558 0.81673 0.88846 0.70780 0.79384 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 9.49 71.98 0.68 -4.15 16 2 C 0.16 5.30 3.20 44.99 0.14 5.45 16 3 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 4 C 0.11 2.76 5.05 86.38 0.44 3.19 16 5 N -0.59 -12.85 2.73 -846.76 -2.31 -15.16 16 6 C 0.05 0.81 9.55 127.77 1.22 2.03 16 7 C 0.50 12.38 6.78 87.66 0.59 12.98 16 8 O -0.57 -19.54 16.18 -3.02 -0.05 -19.59 16 9 C 0.09 1.51 3.17 44.50 0.14 1.65 16 10 H 0.18 1.14 7.20 -2.39 -0.02 1.12 16 11 C 0.05 0.99 7.00 72.35 0.51 1.50 16 12 O -0.34 -10.06 11.09 -47.29 -0.52 -10.58 16 13 C 0.65 19.78 9.16 129.91 1.19 20.97 16 14 O -0.57 -21.78 18.04 19.64 0.35 -21.43 16 15 N -0.70 -15.00 5.66 -573.41 -3.24 -18.25 16 16 N -0.74 -29.08 4.37 -322.96 -1.41 -30.49 16 17 C -0.23 -11.90 10.41 84.03 0.87 -11.03 16 18 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 19 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 20 N -0.99 -61.22 13.97 21.65 0.30 -60.92 16 21 Si 0.95 38.69 27.73 68.60 1.90 40.59 16 22 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.30 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.21 -6.21 4.90 99.48 0.49 -5.72 16 25 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 29 H 0.09 2.16 7.42 -2.39 -0.02 2.14 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.35 3.94 -2.39 -0.01 1.34 16 32 H 0.09 0.98 5.95 -2.38 -0.01 0.96 16 33 H 0.17 1.92 8.11 -2.39 -0.02 1.90 16 34 H 0.09 2.52 7.72 -2.38 -0.02 2.50 16 35 H 0.45 7.93 8.96 -92.71 -0.83 7.10 16 36 H 0.37 12.78 3.49 -92.70 -0.32 12.46 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -82.84 306.05 1.02 -81.83 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.26 Total: 24.68 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 6.26 Total: 29.33 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -6.66 Total: -124.82 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.22 Total: -51.60 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.59 kcal Total: -82.84 1.02 -81.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700745709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.216 kcal (2) G-P(sol) polarization free energy of solvation -82.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds