Wall clock time and date at job start Mon Mar 30 2020 01:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.53001 * 109.47174 * 119.99969 * 2 1 3 5 5 N 1.46501 * 109.46926 * 65.00316 * 4 2 1 6 6 C 1.46500 * 120.00063 * 264.58398 * 5 4 2 7 7 C 1.50704 * 109.47055 * 271.77291 * 6 5 4 8 8 H 1.07997 * 119.99879 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99626 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00429 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99690 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46717 * 90.00606 * 11 9 7 13 13 H 1.48500 * 109.47225 * 210.00205 * 11 9 7 14 14 H 1.48501 * 109.47406 * 330.00555 * 11 9 7 15 15 C 1.34778 * 120.00378 * 84.58723 * 5 4 2 16 16 O 1.21283 * 119.99606 * 4.22036 * 15 5 4 17 17 C 1.50700 * 120.00149 * 184.22718 * 15 5 4 18 18 H 1.08998 * 109.52027 * 309.60805 * 17 15 5 19 19 C 1.53139 * 109.52409 * 69.74483 * 17 15 5 20 20 O 1.43212 * 109.07438 * 175.21978 * 19 17 15 21 21 C 1.43070 * 113.62762 * 302.08165 * 20 19 17 22 22 C 1.53145 * 109.15200 * 57.95536 * 21 20 19 23 23 O 1.43072 * 109.14905 * 304.68796 * 22 21 20 24 24 H 1.09002 * 109.46882 * 299.99481 * 1 2 3 25 25 H 1.08997 * 109.47526 * 60.00053 * 1 2 3 26 26 H 1.09006 * 109.47104 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46960 * 239.99968 * 2 1 3 28 28 H 1.09006 * 109.46910 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46965 * 300.00290 * 3 2 1 30 30 H 1.09001 * 109.47318 * 60.00187 * 3 2 1 31 31 H 1.08994 * 109.47450 * 305.00069 * 4 2 1 32 32 H 1.08998 * 109.46908 * 184.99630 * 4 2 1 33 33 H 1.09010 * 109.46866 * 31.77179 * 6 5 4 34 34 H 1.08993 * 109.47339 * 151.77105 * 6 5 4 35 35 H 0.96995 * 119.99799 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.52532 * 295.17910 * 19 17 15 37 37 H 1.08999 * 109.53069 * 55.37538 * 19 17 15 38 38 H 1.09003 * 109.52668 * 298.05063 * 21 20 19 39 39 H 1.09005 * 109.52761 * 177.85858 * 21 20 19 40 40 H 1.08999 * 109.52668 * 184.78552 * 22 21 20 41 41 H 1.08999 * 109.52335 * 64.59139 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1905 6 6 0.4330 -2.5863 1.8639 7 6 0.7538 -2.9549 3.2895 8 1 1.7649 -2.8611 3.6570 9 6 -0.2438 -3.4117 4.1245 10 7 -1.4750 -3.5264 3.6768 11 14 0.1540 -3.8692 5.8914 12 1 -0.0077 -2.6756 6.7601 13 1 -0.7691 -4.9404 6.3452 14 1 1.5548 -4.3553 5.9737 15 6 2.4179 -3.0144 0.5171 16 8 3.4663 -2.6549 0.0246 17 6 1.9709 -4.4466 0.3758 18 1 1.6992 -4.8416 1.3547 19 6 0.7592 -4.5149 -0.5581 20 8 0.4117 -5.8872 -0.7744 21 6 1.4759 -6.6681 -1.3265 22 6 2.6872 -6.5983 -0.3921 23 8 3.0352 -5.2275 -0.1763 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6765 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2951 33 1 -0.3070 -1.7859 1.8532 34 1 0.0336 -3.4573 1.3445 35 1 -2.1766 -3.8481 4.2642 36 1 -0.0818 -3.9920 -0.1026 37 1 1.0069 -4.0475 -1.5112 38 1 1.7477 -6.2731 -2.3054 39 1 1.1530 -7.7043 -1.4276 40 1 3.5289 -7.1205 -0.8471 41 1 2.4395 -7.0657 0.5609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054701389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:22 Heat of formation + Delta-G solvation = -130.942637 kcal Electronic energy + Delta-G solvation = -22643.886831 eV Core-core repulsion = 19331.049001 eV Total energy + Delta-G solvation = -3312.837830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13829 -38.61283 -36.20594 -35.50977 -34.16080 -32.38928 -31.31136 -28.18860 -27.55583 -26.79906 -25.62026 -24.41509 -22.92750 -21.37064 -20.13379 -18.62340 -16.89320 -16.82317 -16.32984 -16.17680 -15.78460 -15.06779 -15.04364 -14.61540 -14.50070 -14.27734 -13.53857 -13.20937 -12.96149 -12.77675 -12.51123 -12.33738 -12.08271 -11.88864 -11.51368 -11.37508 -11.27866 -11.07876 -10.94364 -10.68411 -10.56952 -10.53892 -10.29546 -10.22541 -10.08972 -9.71453 -9.07920 -8.85516 -8.57261 -7.75801 -6.22372 -4.29965 3.19151 3.20801 3.28507 3.33205 3.40842 3.93067 4.26330 4.40888 4.81376 5.06379 5.11813 5.17252 5.23867 5.26913 5.29994 5.38321 5.44673 5.46422 5.68829 5.79139 5.87566 5.95740 5.99143 6.00717 6.09563 6.15479 6.25878 6.33889 6.40430 6.56348 6.70954 6.77863 7.03458 7.15219 7.24343 7.51423 7.72204 7.99941 8.24127 8.73606 8.93312 9.38172 10.83998 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.010684 B = 0.009354 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.202026 B = 2992.595950 C = 4700.461434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.127 3.873 5 N -0.589 5.589 6 C 0.223 3.777 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.527 3.473 16 O -0.551 6.551 17 C 0.040 3.960 18 H 0.108 0.892 19 C 0.036 3.964 20 O -0.371 6.371 21 C 0.021 3.979 22 C 0.024 3.976 23 O -0.357 6.357 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.266 0.734 36 H 0.125 0.875 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 -0.014 -7.814 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.004 3.996 5 N -0.321 5.321 6 C 0.103 3.897 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.313 3.687 16 O -0.430 6.430 17 C -0.021 4.021 18 H 0.125 0.875 19 C -0.041 4.041 20 O -0.290 6.290 21 C -0.056 4.056 22 C -0.054 4.054 23 O -0.275 6.275 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.908 0.122 -8.001 8.514 hybrid contribution 0.037 -0.405 1.149 1.218 sum 2.945 -0.283 -6.852 7.464 Atomic orbital electron populations 1.21884 0.94964 1.02408 1.01006 1.21502 0.96347 0.95958 0.99364 1.21742 1.00842 0.95852 1.01450 1.21368 1.00101 0.80755 0.97348 1.48112 1.26550 1.07087 1.50337 1.19812 0.81096 0.96501 0.92244 1.21498 0.95585 1.45173 0.95910 0.92029 1.24928 0.94805 0.95074 0.98857 1.69906 1.00569 1.45653 1.36436 0.86521 0.78445 0.78333 0.84369 1.20467 1.20996 1.19765 1.19715 0.84071 0.86160 0.78774 1.90613 1.23421 1.79494 1.49488 1.22591 0.88209 0.91918 0.99345 0.87454 1.23396 0.98540 0.83516 0.98604 1.88169 1.36192 1.20673 1.83941 1.23254 0.88857 0.97085 0.96412 1.23263 0.98333 0.84073 0.99709 1.88151 1.35656 1.19647 1.84092 0.92551 0.93576 0.91954 0.91350 0.92799 0.92962 0.92644 0.90019 0.91215 0.93679 0.93781 0.92416 0.85718 0.92400 0.92387 0.87967 0.87882 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.33 37.16 0.31 -1.89 16 2 C -0.11 -1.75 3.09 -90.62 -0.28 -2.03 16 3 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 4 C 0.13 2.33 4.83 -4.04 -0.02 2.31 16 5 N -0.59 -12.19 2.19 -175.06 -0.38 -12.58 16 6 C 0.22 5.05 3.83 -5.19 -0.02 5.03 16 7 C -0.54 -13.88 9.27 -34.44 -0.32 -14.20 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -23.85 13.29 55.43 0.74 -23.11 16 11 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.53 11.40 6.99 -10.98 -0.08 11.32 16 16 O -0.55 -13.15 16.17 -14.12 -0.23 -13.38 16 17 C 0.04 0.81 2.41 -27.81 -0.07 0.74 16 18 H 0.11 2.32 7.50 -51.93 -0.39 1.93 16 19 C 0.04 0.65 6.02 37.23 0.22 0.87 16 20 O -0.37 -6.41 10.85 -48.80 -0.53 -6.93 16 21 C 0.02 0.28 7.05 37.23 0.26 0.55 16 22 C 0.02 0.34 7.05 37.23 0.26 0.60 16 23 O -0.36 -6.90 10.04 -62.44 -0.63 -7.53 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 32 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 33 H 0.05 1.05 6.53 -51.92 -0.34 0.71 16 34 H 0.04 1.02 4.10 -51.93 -0.21 0.81 16 35 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.13 2.30 5.58 -51.93 -0.29 2.01 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -29.72 328.17 -7.15 -36.87 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.56 Total: 2.85 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 0.52 Total: 3.47 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.35 Total: -35.69 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.39 Total: -27.84 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.72 -7.15 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054701389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.073 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds