Wall clock time and date at job start Mon Mar 30 2020 01:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.53001 * 109.47174 * 119.99969 * 2 1 3 5 5 N 1.46501 * 109.46926 * 65.00316 * 4 2 1 6 6 C 1.46500 * 120.00063 * 264.58398 * 5 4 2 7 7 C 1.50704 * 109.47055 * 271.77291 * 6 5 4 8 8 H 1.07997 * 119.99879 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99626 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00429 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99690 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46717 * 90.00606 * 11 9 7 13 13 H 1.48500 * 109.47225 * 210.00205 * 11 9 7 14 14 H 1.48501 * 109.47406 * 330.00555 * 11 9 7 15 15 C 1.34778 * 120.00378 * 84.58723 * 5 4 2 16 16 O 1.21283 * 119.99606 * 4.22036 * 15 5 4 17 17 C 1.50700 * 120.00149 * 184.22718 * 15 5 4 18 18 H 1.08998 * 109.52027 * 309.60805 * 17 15 5 19 19 C 1.53139 * 109.52409 * 69.74483 * 17 15 5 20 20 O 1.43212 * 109.07438 * 175.21978 * 19 17 15 21 21 C 1.43070 * 113.62762 * 302.08165 * 20 19 17 22 22 C 1.53145 * 109.15200 * 57.95536 * 21 20 19 23 23 O 1.43072 * 109.14905 * 304.68796 * 22 21 20 24 24 H 1.09002 * 109.46882 * 299.99481 * 1 2 3 25 25 H 1.08997 * 109.47526 * 60.00053 * 1 2 3 26 26 H 1.09006 * 109.47104 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46960 * 239.99968 * 2 1 3 28 28 H 1.09006 * 109.46910 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46965 * 300.00290 * 3 2 1 30 30 H 1.09001 * 109.47318 * 60.00187 * 3 2 1 31 31 H 1.08994 * 109.47450 * 305.00069 * 4 2 1 32 32 H 1.08998 * 109.46908 * 184.99630 * 4 2 1 33 33 H 1.09010 * 109.46866 * 31.77179 * 6 5 4 34 34 H 1.08993 * 109.47339 * 151.77105 * 6 5 4 35 35 H 0.96995 * 119.99799 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.52532 * 295.17910 * 19 17 15 37 37 H 1.08999 * 109.53069 * 55.37538 * 19 17 15 38 38 H 1.09003 * 109.52668 * 298.05063 * 21 20 19 39 39 H 1.09005 * 109.52761 * 177.85858 * 21 20 19 40 40 H 1.08999 * 109.52668 * 184.78552 * 22 21 20 41 41 H 1.08999 * 109.52335 * 64.59139 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1905 6 6 0.4330 -2.5863 1.8639 7 6 0.7538 -2.9549 3.2895 8 1 1.7649 -2.8611 3.6570 9 6 -0.2438 -3.4117 4.1245 10 7 -1.4750 -3.5264 3.6768 11 14 0.1540 -3.8692 5.8914 12 1 -0.0077 -2.6756 6.7601 13 1 -0.7691 -4.9404 6.3452 14 1 1.5548 -4.3553 5.9737 15 6 2.4179 -3.0144 0.5171 16 8 3.4663 -2.6549 0.0246 17 6 1.9709 -4.4466 0.3758 18 1 1.6992 -4.8416 1.3547 19 6 0.7592 -4.5149 -0.5581 20 8 0.4117 -5.8872 -0.7744 21 6 1.4759 -6.6681 -1.3265 22 6 2.6872 -6.5983 -0.3921 23 8 3.0352 -5.2275 -0.1763 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6765 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2951 33 1 -0.3070 -1.7859 1.8532 34 1 0.0336 -3.4573 1.3445 35 1 -2.1766 -3.8481 4.2642 36 1 -0.0818 -3.9920 -0.1026 37 1 1.0069 -4.0475 -1.5112 38 1 1.7477 -6.2731 -2.3054 39 1 1.1530 -7.7043 -1.4276 40 1 3.5289 -7.1205 -0.8471 41 1 2.4395 -7.0657 0.5609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054701389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:21 Heat of formation + Delta-G solvation = -148.597713 kcal Electronic energy + Delta-G solvation = -22644.652413 eV Core-core repulsion = 19331.049001 eV Total energy + Delta-G solvation = -3313.603412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66515 -40.10880 -37.72257 -36.93530 -35.79635 -34.27076 -32.65809 -29.62792 -29.28536 -27.98760 -27.09846 -25.89987 -24.70118 -22.69749 -21.48827 -20.19665 -18.77868 -18.34394 -17.90481 -17.70221 -17.12593 -16.53076 -16.45440 -16.41278 -15.89367 -15.76586 -14.94743 -14.63284 -14.41180 -14.27233 -14.13972 -13.74228 -13.66407 -13.11720 -13.03442 -12.97028 -12.73133 -12.62061 -12.51649 -12.14307 -12.12550 -11.88813 -11.83691 -11.60125 -11.56722 -11.48413 -10.76132 -10.54382 -10.26214 -9.49504 -8.21847 -6.35822 1.39276 1.41437 1.48379 1.54108 1.87939 2.38783 2.65185 2.91583 3.08247 3.46067 3.58959 3.85408 3.96580 3.99103 4.03896 4.13840 4.19411 4.27113 4.41953 4.50318 4.60141 4.67928 4.75282 4.77635 4.81075 4.90874 4.93987 5.03071 5.06954 5.18701 5.25812 5.40777 5.46838 5.61986 5.77131 5.88505 5.94471 6.04546 6.47004 6.75899 7.18606 7.36474 8.83115 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.010684 B = 0.009354 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.202026 B = 2992.595950 C = 4700.461434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.586 5.586 6 C 0.238 3.762 7 C -0.555 4.555 8 H 0.048 0.952 9 C 0.027 3.973 10 N -0.911 5.911 11 Si 0.951 3.049 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.276 1.276 15 C 0.521 3.479 16 O -0.577 6.577 17 C 0.047 3.953 18 H 0.085 0.915 19 C 0.048 3.952 20 O -0.387 6.387 21 C 0.017 3.983 22 C 0.014 3.986 23 O -0.380 6.380 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.269 0.731 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -0.188 -8.280 8.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.193 4.193 4 C -0.001 4.001 5 N -0.317 5.317 6 C 0.118 3.882 7 C -0.594 4.594 8 H 0.066 0.934 9 C -0.174 4.174 10 N -0.550 5.550 11 Si 0.777 3.223 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.201 1.201 15 C 0.308 3.692 16 O -0.458 6.458 17 C -0.015 4.015 18 H 0.103 0.897 19 C -0.029 4.029 20 O -0.306 6.306 21 C -0.059 4.059 22 C -0.062 4.062 23 O -0.299 6.299 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.864 -0.048 -8.467 8.938 hybrid contribution 0.093 -0.412 1.266 1.334 sum 2.957 -0.460 -7.201 7.798 Atomic orbital electron populations 1.21836 0.94409 1.01406 1.02172 1.21424 0.96698 0.97318 0.96987 1.21703 1.00908 0.93792 1.02874 1.21565 0.99721 0.79804 0.98978 1.48118 1.25805 1.08116 1.49636 1.19528 0.81509 0.96090 0.91097 1.21680 0.94974 1.45362 0.97367 0.93418 1.25557 0.94702 0.95005 1.02136 1.69977 1.01169 1.46235 1.37614 0.85659 0.77962 0.78263 0.80435 1.19797 1.20408 1.20085 1.20062 0.83700 0.86994 0.78397 1.90582 1.24386 1.80131 1.50716 1.22402 0.89276 0.90876 0.98897 0.89722 1.23172 0.97003 0.84408 0.98341 1.88141 1.37856 1.20263 1.84328 1.23561 0.87607 0.98447 0.96295 1.23638 1.00344 0.81841 1.00353 1.88116 1.35906 1.21930 1.83985 0.92506 0.91234 0.94037 0.92823 0.92714 0.91035 0.91710 0.90020 0.92005 0.94253 0.94091 0.92190 0.86842 0.91464 0.91180 0.84425 0.84425 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.33 71.98 0.60 -3.55 16 2 C -0.10 -3.22 3.09 -10.79 -0.03 -3.25 16 3 C -0.14 -3.23 9.19 71.98 0.66 -2.57 16 4 C 0.12 4.50 4.83 86.38 0.42 4.92 16 5 N -0.59 -24.81 2.19 -826.15 -1.81 -26.62 16 6 C 0.24 11.02 3.83 85.63 0.33 11.35 16 7 C -0.56 -28.82 9.27 25.60 0.24 -28.58 16 8 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 9 C 0.03 1.42 5.46 84.65 0.46 1.88 16 10 N -0.91 -49.03 13.29 21.45 0.28 -48.75 16 11 Si 0.95 41.76 29.54 68.60 2.03 43.79 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 15 C 0.52 23.07 6.99 87.66 0.61 23.68 16 16 O -0.58 -28.01 16.17 15.78 0.26 -27.75 16 17 C 0.05 1.90 2.41 29.89 0.07 1.97 16 18 H 0.09 3.79 7.50 -2.39 -0.02 3.77 16 19 C 0.05 1.72 6.02 72.03 0.43 2.16 16 20 O -0.39 -12.97 10.85 -136.00 -1.48 -14.45 16 21 C 0.02 0.42 7.05 72.03 0.51 0.93 16 22 C 0.01 0.39 7.05 72.03 0.51 0.90 16 23 O -0.38 -14.60 10.04 -122.96 -1.24 -15.83 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.38 6.28 -2.38 -0.01 1.36 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 2.98 8.03 -2.39 -0.02 2.96 16 32 H 0.06 2.37 7.53 -2.39 -0.02 2.35 16 33 H 0.04 1.87 6.53 -2.38 -0.02 1.86 16 34 H 0.04 1.95 4.10 -2.39 -0.01 1.94 16 35 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.11 4.29 5.58 -2.38 -0.01 4.28 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.14 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -63.37 328.17 3.86 -59.51 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 1.01 Total: 20.27 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 4.81 Total: 9.84 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -1.53 Total: -75.37 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -2.46 Total: -58.04 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -63.37 3.86 -59.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054701389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.083 kcal (2) G-P(sol) polarization free energy of solvation -63.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds