Wall clock time and date at job start Mon Mar 30 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 N 1.46503 * 109.46767 * 180.02562 * 3 2 1 5 5 C 1.37095 * 120.00000 * 264.74861 * 4 3 2 6 6 H 1.08003 * 120.00129 * 146.16678 * 5 4 3 7 7 C 1.38949 * 120.00042 * 326.17447 * 5 4 3 8 8 N 1.31410 * 119.99752 * 337.66913 * 7 5 4 9 9 Si 1.86799 * 120.00209 * 157.67331 * 7 5 4 10 10 H 1.48497 * 109.47209 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47025 * 119.99779 * 9 7 5 12 12 H 1.48506 * 109.46930 * 239.99439 * 9 7 5 13 13 C 1.34774 * 119.99915 * 84.74625 * 4 3 2 14 14 O 1.21296 * 120.00135 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00307 * 0.02562 * 13 4 3 16 16 O 1.42897 * 109.47064 * 179.97438 * 15 13 4 17 17 C 1.42900 * 113.99924 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47336 * 179.97438 * 17 16 15 19 19 H 1.08998 * 111.02141 * 302.23006 * 18 17 16 20 20 C 1.55567 * 111.22748 * 177.92618 * 18 17 16 21 21 C 1.54381 * 102.27500 * 207.98691 * 20 18 17 22 22 O 1.43237 * 107.59345 * 21.35598 * 21 20 18 23 23 C 1.43651 * 109.96755 * 1.70950 * 22 21 20 24 24 H 1.08997 * 109.46896 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46942 * 300.00024 * 1 2 3 26 26 H 1.08999 * 109.46677 * 60.00083 * 1 2 3 27 27 H 1.08996 * 109.46942 * 239.99976 * 2 1 3 28 28 H 1.08999 * 109.46677 * 119.99917 * 2 1 3 29 29 H 1.08996 * 109.47321 * 60.00208 * 3 2 1 30 30 H 1.08998 * 109.46854 * 299.99624 * 3 2 1 31 31 H 0.97003 * 120.00224 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47461 * 59.99435 * 15 13 4 33 33 H 1.09004 * 109.46649 * 299.99375 * 15 13 4 34 34 H 1.09003 * 109.47414 * 59.99432 * 17 16 15 35 35 H 1.09005 * 109.47118 * 299.99600 * 17 16 15 36 36 H 1.09000 * 110.84015 * 89.78357 * 20 18 17 37 37 H 1.09004 * 110.83518 * 326.17787 * 20 18 17 38 38 H 1.08999 * 109.82748 * 261.84188 * 21 20 18 39 39 H 1.09006 * 109.82822 * 140.87214 * 21 20 18 40 40 H 1.09006 * 110.30420 * 94.49068 * 23 22 21 41 41 H 1.08994 * 110.30959 * 216.55698 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1911 1.5509 1.1814 6 1 5.1340 1.0396 1.3075 7 6 3.6732 2.3187 2.2173 8 7 2.8019 3.2680 1.9594 9 14 4.2155 2.0014 3.9765 10 1 5.1959 0.8863 3.9987 11 1 4.8464 3.2271 4.5287 12 1 3.0346 1.6382 4.8006 13 6 4.1785 1.3358 -1.1632 14 8 5.3914 1.3352 -1.1637 15 6 3.4245 1.2170 -2.4626 16 8 4.3526 1.1182 -3.5446 17 6 3.7376 1.0003 -4.8290 18 6 4.8201 0.9026 -5.9058 19 1 5.4795 1.7700 -5.8771 20 6 4.1945 0.7203 -7.3185 21 6 5.3003 -0.0516 -8.0700 22 8 6.1299 -0.6844 -7.0887 23 6 5.6242 -0.4150 -5.7714 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 2.4406 3.8043 2.6825 32 1 2.7980 2.0982 -2.6010 33 1 2.7975 0.3257 -2.4387 34 1 3.1170 1.8765 -5.0166 35 1 3.1177 0.1040 -4.8542 36 1 4.0082 1.6863 -7.7877 37 1 3.2789 0.1312 -7.2640 38 1 5.8949 0.6409 -8.6658 39 1 4.8509 -0.8057 -8.7162 40 1 4.9720 -1.2246 -5.4437 41 1 6.4477 -0.2857 -5.0692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117625370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:02 Heat of formation + Delta-G solvation = -130.065787 kcal Electronic energy + Delta-G solvation = -21373.995871 eV Core-core repulsion = 18061.196064 eV Total energy + Delta-G solvation = -3312.799807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.58296 -38.73792 -37.03999 -35.18772 -32.99361 -32.72081 -31.23702 -29.75426 -27.79524 -25.84132 -25.25047 -23.98862 -22.33895 -21.04528 -20.82398 -19.10728 -17.16657 -16.88683 -16.39441 -15.98344 -15.70620 -15.38156 -14.95698 -14.64000 -14.38066 -13.88574 -13.75671 -13.56575 -13.36464 -12.80360 -12.72178 -11.91274 -11.87857 -11.71457 -11.65565 -11.46428 -11.43042 -11.18996 -11.02291 -10.91264 -10.74426 -10.61609 -10.31514 -10.28677 -9.99852 -9.58833 -9.35454 -8.96297 -8.34983 -7.50913 -6.35117 -3.95882 3.14692 3.25784 3.32018 3.54777 3.85931 3.89018 4.19561 4.37656 4.65929 4.77711 4.92782 4.99493 5.11237 5.16688 5.29175 5.41840 5.45502 5.48383 5.52871 5.59989 5.63758 5.67320 5.73673 5.75092 5.85097 5.99651 6.01245 6.11217 6.17250 6.32112 6.42296 6.55329 6.86738 6.91518 7.23594 7.37965 7.58812 8.23295 8.50767 9.17944 9.38160 9.99041 10.68781 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027188 B = 0.003973 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.610137 B = 7046.381941 C = 7635.785997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.099 3.901 4 N -0.441 5.441 5 C -0.305 4.305 6 H 0.094 0.906 7 C 0.035 3.965 8 N -0.870 5.870 9 Si 0.918 3.082 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.458 3.542 14 O -0.562 6.562 15 C 0.051 3.949 16 O -0.360 6.360 17 C 0.070 3.930 18 C -0.120 4.120 19 H 0.096 0.904 20 C -0.149 4.149 21 C 0.052 3.948 22 O -0.388 6.388 23 C 0.060 3.940 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.045 0.955 31 H 0.267 0.733 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 -4.613 -13.215 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.025 4.025 4 N -0.161 5.161 5 C -0.432 4.432 6 H 0.111 0.889 7 C -0.169 4.169 8 N -0.508 5.508 9 Si 0.744 3.256 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.246 3.754 14 O -0.444 6.444 15 C -0.029 4.029 16 O -0.278 6.278 17 C -0.007 4.007 18 C -0.138 4.138 19 H 0.115 0.885 20 C -0.187 4.187 21 C -0.024 4.024 22 O -0.308 6.308 23 C -0.016 4.016 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.006 -4.589 -13.119 14.773 hybrid contribution -0.608 0.165 0.822 1.035 sum -5.614 -4.425 -12.298 14.224 Atomic orbital electron populations 1.21678 0.96261 1.00725 1.01591 1.21998 0.94947 0.99296 1.01766 1.21711 0.82002 0.94532 1.04260 1.43462 1.04587 1.63578 1.04505 1.19517 1.06919 1.28404 0.88373 0.88861 1.25329 0.97336 0.93638 1.00561 1.69927 1.31098 1.16975 1.32815 0.86009 0.78630 0.78691 0.82259 1.19117 1.20753 1.20587 1.19965 0.88224 0.83098 0.84158 1.90547 1.13819 1.53619 1.86412 1.22392 0.92054 1.00697 0.87720 1.88018 1.32165 1.94590 1.13048 1.22346 0.94450 1.00088 0.83813 1.22859 0.97669 1.00167 0.93145 0.88522 1.23168 0.99083 1.01620 0.94841 1.23073 0.91633 0.95951 0.91790 1.88404 1.52268 1.74568 1.15522 1.23424 0.98742 0.95031 0.84418 0.93399 0.92627 0.93234 0.93333 0.91507 0.86554 0.93667 0.92268 0.91653 0.91895 0.93032 0.93296 0.89729 0.90313 0.91362 0.91583 0.92056 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.14 -2.48 6.17 -26.73 -0.16 -2.64 16 3 C 0.10 2.10 4.72 -4.04 -0.02 2.08 16 4 N -0.44 -11.17 2.56 -114.81 -0.29 -11.47 16 5 C -0.30 -8.46 8.98 -14.93 -0.13 -8.59 16 6 H 0.09 2.73 7.70 -52.48 -0.40 2.33 16 7 C 0.04 0.92 4.92 -17.47 -0.09 0.83 16 8 N -0.87 -23.10 11.33 55.50 0.63 -22.47 16 9 Si 0.92 20.46 29.61 -169.99 -5.03 15.42 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.46 11.58 7.67 -10.99 -0.08 11.50 16 14 O -0.56 -16.58 16.32 -14.37 -0.23 -16.81 16 15 C 0.05 0.99 5.02 36.01 0.18 1.17 16 16 O -0.36 -6.82 9.73 -55.14 -0.54 -7.35 16 17 C 0.07 0.94 5.40 37.16 0.20 1.14 16 18 C -0.12 -1.46 3.39 -88.23 -0.30 -1.76 16 19 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 20 C -0.15 -1.34 6.51 -24.64 -0.16 -1.50 16 21 C 0.05 0.51 7.79 37.88 0.30 0.81 16 22 O -0.39 -5.27 11.36 -35.23 -0.40 -5.67 16 23 C 0.06 0.81 7.12 38.19 0.27 1.08 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.81 6.60 -51.93 -0.34 0.46 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.12 2.73 5.34 -51.93 -0.28 2.45 16 30 H 0.04 0.87 6.66 -51.93 -0.35 0.52 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.07 1.15 7.41 -51.93 -0.38 0.77 16 33 H 0.06 1.06 6.54 -51.93 -0.34 0.72 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.79 8.00 -51.93 -0.42 0.38 16 41 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -32.41 333.94 -7.18 -39.59 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.71 Total: 1.28 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 0.37 Total: 2.46 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.34 Total: -33.94 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -1.17 Total: -29.84 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.41 -7.18 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117625370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.477 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds