Wall clock time and date at job start Mon Mar 30 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 N 1.46503 * 109.46767 * 180.02562 * 3 2 1 5 5 C 1.37095 * 120.00000 * 264.74861 * 4 3 2 6 6 H 1.08003 * 120.00129 * 146.16678 * 5 4 3 7 7 C 1.38949 * 120.00042 * 326.17447 * 5 4 3 8 8 N 1.31410 * 119.99752 * 337.66913 * 7 5 4 9 9 Si 1.86799 * 120.00209 * 157.67331 * 7 5 4 10 10 H 1.48497 * 109.47209 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47025 * 119.99779 * 9 7 5 12 12 H 1.48506 * 109.46930 * 239.99439 * 9 7 5 13 13 C 1.34774 * 119.99915 * 84.74625 * 4 3 2 14 14 O 1.21296 * 120.00135 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00307 * 0.02562 * 13 4 3 16 16 O 1.42897 * 109.47064 * 179.97438 * 15 13 4 17 17 C 1.42900 * 113.99924 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47336 * 179.97438 * 17 16 15 19 19 H 1.08998 * 111.02141 * 302.23006 * 18 17 16 20 20 C 1.55567 * 111.22748 * 177.92618 * 18 17 16 21 21 C 1.54381 * 102.27500 * 207.98691 * 20 18 17 22 22 O 1.43237 * 107.59345 * 21.35598 * 21 20 18 23 23 C 1.43651 * 109.96755 * 1.70950 * 22 21 20 24 24 H 1.08997 * 109.46896 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46942 * 300.00024 * 1 2 3 26 26 H 1.08999 * 109.46677 * 60.00083 * 1 2 3 27 27 H 1.08996 * 109.46942 * 239.99976 * 2 1 3 28 28 H 1.08999 * 109.46677 * 119.99917 * 2 1 3 29 29 H 1.08996 * 109.47321 * 60.00208 * 3 2 1 30 30 H 1.08998 * 109.46854 * 299.99624 * 3 2 1 31 31 H 0.97003 * 120.00224 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47461 * 59.99435 * 15 13 4 33 33 H 1.09004 * 109.46649 * 299.99375 * 15 13 4 34 34 H 1.09003 * 109.47414 * 59.99432 * 17 16 15 35 35 H 1.09005 * 109.47118 * 299.99600 * 17 16 15 36 36 H 1.09000 * 110.84015 * 89.78357 * 20 18 17 37 37 H 1.09004 * 110.83518 * 326.17787 * 20 18 17 38 38 H 1.08999 * 109.82748 * 261.84188 * 21 20 18 39 39 H 1.09006 * 109.82822 * 140.87214 * 21 20 18 40 40 H 1.09006 * 110.30420 * 94.49068 * 23 22 21 41 41 H 1.08994 * 110.30959 * 216.55698 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1911 1.5509 1.1814 6 1 5.1340 1.0396 1.3075 7 6 3.6732 2.3187 2.2173 8 7 2.8019 3.2680 1.9594 9 14 4.2155 2.0014 3.9765 10 1 5.1959 0.8863 3.9987 11 1 4.8464 3.2271 4.5287 12 1 3.0346 1.6382 4.8006 13 6 4.1785 1.3358 -1.1632 14 8 5.3914 1.3352 -1.1637 15 6 3.4245 1.2170 -2.4626 16 8 4.3526 1.1182 -3.5446 17 6 3.7376 1.0003 -4.8290 18 6 4.8201 0.9026 -5.9058 19 1 5.4795 1.7700 -5.8771 20 6 4.1945 0.7203 -7.3185 21 6 5.3003 -0.0516 -8.0700 22 8 6.1299 -0.6844 -7.0887 23 6 5.6242 -0.4150 -5.7714 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 2.4406 3.8043 2.6825 32 1 2.7980 2.0982 -2.6010 33 1 2.7975 0.3257 -2.4387 34 1 3.1170 1.8765 -5.0166 35 1 3.1177 0.1040 -4.8542 36 1 4.0082 1.6863 -7.7877 37 1 3.2789 0.1312 -7.2640 38 1 5.8949 0.6409 -8.6658 39 1 4.8509 -0.8057 -8.7162 40 1 4.9720 -1.2246 -5.4437 41 1 6.4477 -0.2857 -5.0692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117625370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:02 Heat of formation + Delta-G solvation = -151.123101 kcal Electronic energy + Delta-G solvation = -21374.908984 eV Core-core repulsion = 18061.196064 eV Total energy + Delta-G solvation = -3313.712921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74148 -40.33473 -38.43834 -37.05667 -34.58590 -33.88108 -33.03991 -30.68099 -29.36091 -27.39387 -26.49234 -25.72133 -23.16525 -22.49787 -21.80550 -20.91144 -18.87324 -18.29068 -17.80078 -17.24943 -16.96796 -16.87359 -16.58074 -15.94933 -15.81173 -15.38992 -15.26090 -14.88090 -14.44998 -14.17597 -14.05078 -13.50427 -13.33269 -13.23773 -13.03633 -12.74345 -12.63843 -12.54656 -12.29993 -12.25676 -12.07336 -11.98947 -11.84324 -11.69172 -11.53241 -10.93600 -10.61519 -10.50649 -10.33689 -9.48724 -8.36823 -6.06295 1.34838 1.41212 1.54803 1.97161 2.15996 2.45472 2.93091 2.97882 3.29735 3.51812 3.79764 3.89019 4.02068 4.05271 4.22122 4.23913 4.30166 4.31133 4.37296 4.40938 4.51714 4.61180 4.64001 4.75994 4.79636 4.87911 4.89692 4.99323 5.02623 5.15758 5.22897 5.31309 5.40703 5.47158 5.60503 6.00900 6.06629 6.24138 6.54880 7.16620 7.42509 8.03294 8.65508 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027188 B = 0.003973 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.610137 B = 7046.381941 C = 7635.785997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.098 3.902 4 N -0.449 5.449 5 C -0.344 4.344 6 H 0.061 0.939 7 C 0.007 3.993 8 N -0.884 5.884 9 Si 0.980 3.020 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.260 1.260 13 C 0.437 3.563 14 O -0.623 6.623 15 C 0.068 3.932 16 O -0.396 6.396 17 C 0.065 3.935 18 C -0.121 4.121 19 H 0.082 0.918 20 C -0.135 4.135 21 C 0.042 3.958 22 O -0.412 6.412 23 C 0.058 3.942 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.275 0.725 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 -4.826 -14.331 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C -0.025 4.025 4 N -0.169 5.169 5 C -0.472 4.472 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.522 5.522 9 Si 0.803 3.197 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.185 1.185 13 C 0.226 3.774 14 O -0.509 6.509 15 C -0.011 4.011 16 O -0.315 6.315 17 C -0.011 4.011 18 C -0.140 4.140 19 H 0.100 0.900 20 C -0.172 4.172 21 C -0.034 4.034 22 O -0.333 6.333 23 C -0.018 4.018 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.786 -4.796 -14.250 16.931 hybrid contribution 0.263 0.265 1.117 1.178 sum -7.523 -4.531 -13.132 15.798 Atomic orbital electron populations 1.21631 0.93028 1.02470 1.02328 1.21902 0.97593 0.96425 1.01300 1.21857 0.79499 0.97029 1.04080 1.43759 1.06291 1.62722 1.04100 1.19417 1.07080 1.30059 0.90654 0.92105 1.26031 0.97067 0.92797 1.03682 1.69977 1.31137 1.16836 1.34233 0.85098 0.78706 0.78248 0.77612 1.19830 1.20343 1.18458 1.21061 0.88073 0.82035 0.86210 1.90492 1.16544 1.56299 1.87596 1.22154 0.91132 1.02913 0.84920 1.87990 1.33645 1.94956 1.14903 1.22650 0.94995 1.02110 0.81322 1.22857 0.97473 0.98653 0.95024 0.89992 1.23157 0.99043 1.02930 0.92086 1.23355 0.91898 0.96787 0.91342 1.88373 1.53674 1.75230 1.15977 1.23349 0.98027 0.96180 0.84288 0.91162 0.93183 0.91239 0.92190 0.93671 0.88845 0.91498 0.91483 0.89555 0.88899 0.90866 0.91027 0.87595 0.88496 0.90437 0.89692 0.91568 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.99 0.71 -2.68 16 2 C -0.13 -4.48 6.17 30.60 0.19 -4.29 16 3 C 0.10 4.09 4.72 86.38 0.41 4.50 16 4 N -0.45 -23.29 2.56 -635.54 -1.63 -24.92 16 5 C -0.34 -19.89 8.98 84.04 0.75 -19.13 16 6 H 0.06 3.82 7.70 -2.91 -0.02 3.80 16 7 C 0.01 0.38 4.92 84.93 0.42 0.79 16 8 N -0.88 -46.97 11.33 21.66 0.25 -46.73 16 9 Si 0.98 42.32 29.61 68.60 2.03 44.35 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 13 C 0.44 22.65 7.67 87.66 0.67 23.32 16 14 O -0.62 -38.73 16.32 15.96 0.26 -38.47 16 15 C 0.07 2.54 5.02 71.24 0.36 2.89 16 16 O -0.40 -14.79 9.73 -129.94 -1.26 -16.05 16 17 C 0.07 1.59 5.40 71.98 0.39 1.98 16 18 C -0.12 -2.80 3.39 -9.24 -0.03 -2.83 16 19 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 20 C -0.13 -2.00 6.51 31.95 0.21 -1.79 16 21 C 0.04 0.74 7.79 72.45 0.56 1.30 16 22 O -0.41 -11.01 11.36 -148.98 -1.69 -12.70 16 23 C 0.06 1.57 7.12 72.65 0.52 2.08 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.86 6.60 -2.39 -0.02 1.84 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 4.36 5.34 -2.39 -0.01 4.35 16 30 H 0.07 2.44 6.66 -2.39 -0.02 2.42 16 31 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 32 H 0.09 2.82 7.41 -2.39 -0.02 2.81 16 33 H 0.09 2.86 6.54 -2.39 -0.02 2.84 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.42 8.10 -2.38 -0.02 1.41 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.12 8.04 -2.39 -0.02 1.10 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.07 1.68 8.00 -2.38 -0.02 1.67 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -74.64 333.94 4.11 -70.53 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.00 Total: 17.84 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.16 Total: 6.15 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -1.38 Total: -71.64 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -2.70 Total: -67.23 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -74.64 4.11 -70.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117625370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.598 kcal (2) G-P(sol) polarization free energy of solvation -74.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds