Wall clock time and date at job start Mon Mar 30 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 H 1.09007 * 109.46886 * 304.90067 * 3 2 1 5 5 C 1.50693 * 109.47409 * 184.89910 * 3 2 1 6 6 H 1.08000 * 120.00426 * 245.45555 * 5 3 2 7 7 C 1.37878 * 119.99970 * 65.44821 * 5 3 2 8 8 N 1.31516 * 120.00118 * 9.47002 * 7 5 3 9 9 Si 1.86807 * 119.99888 * 189.47513 * 7 5 3 10 10 H 1.48492 * 109.47491 * 84.99667 * 9 7 5 11 11 H 1.48507 * 109.46771 * 204.99325 * 9 7 5 12 12 H 1.48496 * 109.46986 * 324.99183 * 9 7 5 13 13 N 1.46500 * 109.47364 * 64.89683 * 3 2 1 14 14 C 1.34775 * 119.99841 * 275.00168 * 13 3 2 15 15 O 1.21279 * 120.00490 * 359.97438 * 14 13 3 16 16 C 1.50709 * 120.00057 * 179.97438 * 14 13 3 17 17 O 1.42890 * 109.47011 * 180.02562 * 16 14 13 18 18 C 1.42907 * 113.99733 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.47186 * 180.02562 * 18 17 16 20 20 H 1.09001 * 111.01939 * 302.22839 * 19 18 17 21 21 C 1.55562 * 111.22576 * 177.92460 * 19 18 17 22 22 C 1.54376 * 102.27615 * 207.98473 * 21 19 18 23 23 O 1.43240 * 107.59049 * 21.35242 * 22 21 19 24 24 C 1.43647 * 109.96937 * 1.71556 * 23 22 21 25 25 H 1.08997 * 109.47320 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47528 * 300.00462 * 1 2 3 27 27 H 1.09004 * 109.46803 * 60.00100 * 1 2 3 28 28 H 1.09000 * 109.47039 * 239.99416 * 2 1 3 29 29 H 1.09004 * 109.46803 * 119.99900 * 2 1 3 30 30 H 0.97000 * 119.99574 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99946 * 95.00239 * 13 3 2 32 32 H 1.09005 * 109.46592 * 59.99648 * 16 14 13 33 33 H 1.08997 * 109.46672 * 300.00438 * 16 14 13 34 34 H 1.09001 * 109.47362 * 59.99849 * 18 17 16 35 35 H 1.08997 * 109.46826 * 299.99686 * 18 17 16 36 36 H 1.08995 * 110.83784 * 89.78183 * 21 19 18 37 37 H 1.09002 * 110.83600 * 326.18119 * 21 19 18 38 38 H 1.09005 * 109.82984 * 261.84269 * 22 21 19 39 39 H 1.09000 * 109.83303 * 140.87304 * 22 21 19 40 40 H 1.09002 * 110.31100 * 94.48528 * 24 23 22 41 41 H 1.08997 * 110.31074 * 216.55700 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1213 6 1 4.1493 1.8089 0.6939 7 6 4.1412 0.9800 -1.2731 8 7 3.4097 0.7113 -2.3325 9 14 5.9920 0.7325 -1.3287 10 1 6.3290 -0.6069 -0.7833 11 1 6.4620 0.8271 -2.7343 12 1 6.6562 1.7807 -0.5130 13 7 1.6504 2.0982 1.2507 14 6 0.4329 2.6652 1.3634 15 8 -0.3399 2.6330 0.4294 16 6 0.0318 3.3394 2.6503 17 8 -1.2934 3.8584 2.5231 18 6 -1.7727 4.5218 3.6946 19 6 -3.1930 5.0335 3.4460 20 1 -3.2219 5.7057 2.5884 21 6 -3.7752 5.7185 4.7155 22 6 -5.2925 5.4917 4.5443 23 8 -5.4668 4.3850 3.6517 24 6 -4.1868 3.8581 3.2679 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8314 0.3850 -3.1429 31 1 2.2686 2.1244 1.9977 32 1 0.7230 4.1548 2.8640 33 1 0.0615 2.6152 3.4643 34 1 -1.1193 5.3621 3.9294 35 1 -1.7800 3.8225 4.5307 36 1 -3.5405 6.7829 4.7238 37 1 -3.4099 5.2326 5.6203 38 1 -5.7545 6.3839 4.1216 39 1 -5.7435 5.2626 5.5099 40 1 -3.9099 3.0269 3.9164 41 1 -4.2075 3.5346 2.2272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183816453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:50 Heat of formation + Delta-G solvation = -163.056150 kcal Electronic energy + Delta-G solvation = -21063.294387 eV Core-core repulsion = 17749.064010 eV Total energy + Delta-G solvation = -3314.230377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80956 -40.37619 -38.48520 -36.78633 -34.29277 -33.92124 -32.94941 -30.65359 -29.57558 -28.13568 -26.27998 -24.87238 -23.17018 -22.25773 -21.72557 -21.11205 -18.97853 -18.17865 -17.58780 -17.42250 -17.17238 -16.77233 -16.67858 -16.03865 -15.96627 -15.47008 -15.06209 -14.59154 -14.43602 -14.18924 -13.96797 -13.47596 -13.31549 -13.27832 -12.91294 -12.77606 -12.60439 -12.55608 -12.28936 -12.18490 -12.07759 -11.84231 -11.68365 -11.61386 -11.09152 -10.63863 -10.57974 -10.50277 -10.48416 -9.63443 -8.18549 -6.31917 1.45530 1.46754 1.56140 1.85347 2.06990 2.43551 2.89494 3.13240 3.18923 3.52439 3.81143 3.94865 4.02949 4.23841 4.26018 4.30957 4.34327 4.40777 4.46369 4.52936 4.53217 4.65398 4.72488 4.80734 4.88742 4.90163 5.02959 5.05379 5.23164 5.24314 5.41813 5.53114 5.62497 5.74743 5.90953 6.02746 6.07859 6.17696 6.77586 7.02427 7.34945 7.62514 8.90276 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.043776 B = 0.003214 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.472635 B = 8708.488869 C = 9088.321870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.703 5.703 14 C 0.492 3.508 15 O -0.580 6.580 16 C 0.055 3.945 17 O -0.397 6.397 18 C 0.069 3.931 19 C -0.122 4.122 20 H 0.082 0.918 21 C -0.135 4.135 22 C 0.041 3.959 23 O -0.415 6.415 24 C 0.057 3.943 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.021 0.979 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.264 0.736 31 H 0.407 0.593 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 8.396 18.778 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.173 3.827 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.354 5.354 14 C 0.278 3.722 15 O -0.460 6.460 16 C -0.024 4.024 17 O -0.316 6.316 18 C -0.007 4.007 19 C -0.141 4.141 20 H 0.100 0.900 21 C -0.173 4.173 22 C -0.035 4.035 23 O -0.335 6.335 24 C -0.019 4.019 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.242 0.758 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.306 8.221 17.697 21.619 hybrid contribution 1.339 -0.198 -0.324 1.392 sum -7.967 8.023 17.373 20.728 Atomic orbital electron populations 1.21684 0.96868 0.99288 1.00354 1.21710 0.93870 0.99104 1.00472 1.18359 0.93757 0.88985 0.81552 0.98285 1.21555 0.91243 1.43659 1.02195 0.90613 1.25810 1.03259 0.94850 0.94590 1.70149 1.37860 1.44821 1.02817 0.85414 0.79133 0.79085 0.77041 1.19552 1.21637 1.18598 1.46124 1.15286 1.56217 1.17742 1.21037 0.82012 0.78980 0.90165 1.90686 1.52592 1.60340 1.42363 1.22262 0.85796 0.99808 0.94575 1.87993 1.29777 1.75377 1.38426 1.22622 0.93868 0.96995 0.87242 1.22865 0.93809 0.97306 1.00080 0.89977 1.23149 0.93937 1.03145 0.97036 1.23350 0.96714 0.89333 0.94103 1.88381 1.29339 1.49387 1.66370 1.23378 0.82107 0.96220 1.00241 0.93322 0.93485 0.95934 0.93144 0.92910 0.92679 0.75809 0.87699 0.87404 0.90466 0.90854 0.87682 0.88466 0.90626 0.89902 0.91490 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.04 16 2 C -0.11 -5.45 5.50 30.59 0.17 -5.28 16 3 C 0.28 14.07 2.11 44.24 0.09 14.16 16 4 H 0.00 -0.05 7.52 -2.38 -0.02 -0.07 16 5 C -0.55 -28.54 8.66 25.60 0.22 -28.31 16 6 H 0.08 3.63 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.82 5.16 84.65 0.44 1.26 16 8 N -0.92 -53.47 12.16 21.45 0.26 -53.20 16 9 Si 0.97 41.63 29.55 68.60 2.03 43.66 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 13 N -0.70 -27.78 5.02 -446.10 -2.24 -30.02 16 14 C 0.49 19.11 6.47 87.66 0.57 19.67 16 15 O -0.58 -28.83 13.64 16.01 0.22 -28.61 16 16 C 0.05 1.40 6.42 71.24 0.46 1.85 16 17 O -0.40 -11.29 9.73 -129.94 -1.26 -12.56 16 18 C 0.07 1.22 5.40 71.98 0.39 1.61 16 19 C -0.12 -2.26 3.39 -9.24 -0.03 -2.29 16 20 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 21 C -0.14 -1.57 6.51 31.94 0.21 -1.36 16 22 C 0.04 0.62 7.79 72.45 0.56 1.19 16 23 O -0.41 -10.04 11.36 -148.98 -1.69 -11.73 16 24 C 0.06 1.32 7.12 72.65 0.52 1.84 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 2.05 5.65 -2.39 -0.01 2.04 16 27 H 0.02 1.11 7.84 -2.38 -0.02 1.09 16 28 H 0.05 2.73 6.80 -2.39 -0.02 2.71 16 29 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.41 12.85 8.53 -92.71 -0.79 12.06 16 32 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.81 8.04 -2.39 -0.02 0.79 16 38 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.44 8.00 -2.39 -0.02 1.42 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -73.17 333.75 1.73 -71.44 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.22 Total: 21.73 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 4.20 Total: -0.70 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.98 Total: -83.22 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -2.74 Total: -52.90 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -73.17 1.73 -71.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183816453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.618 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds