Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 O 1.42904 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.42898 * 114.00361 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47233 * 180.02562 * 18 17 16 20 20 H 1.09001 * 110.74929 * 57.02080 * 19 18 17 21 21 C 1.55306 * 110.84625 * 180.71383 * 19 18 17 22 22 C 1.54945 * 100.93998 * 152.32198 * 21 19 18 23 23 O 1.43641 * 105.13766 * 323.55293 * 22 21 19 24 24 C 1.43232 * 109.97143 * 24.43041 * 23 22 21 25 25 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 32 32 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 33 33 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 34 34 H 1.09004 * 109.46895 * 300.00104 * 18 17 16 35 35 H 1.08996 * 109.46996 * 59.99837 * 18 17 16 36 36 H 1.09001 * 111.12687 * 270.23992 * 21 19 18 37 37 H 1.09007 * 111.12479 * 34.40264 * 21 19 18 38 38 H 1.09003 * 110.30851 * 204.63745 * 22 21 19 39 39 H 1.08996 * 110.39110 * 82.51969 * 22 21 19 40 40 H 1.09000 * 109.83332 * 238.77302 * 24 23 22 41 41 H 1.09007 * 109.90903 * 117.84086 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 8 -1.2892 3.8570 2.5302 18 6 -1.7665 4.5196 3.7028 19 6 -3.1872 5.0314 3.4568 20 1 -3.8480 4.2135 3.1694 21 6 -3.7314 5.7740 4.7075 22 6 -4.7315 6.7596 4.0523 23 8 -4.1152 7.1525 2.8157 24 6 -3.1927 6.1443 2.3868 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 0.0673 2.6131 3.4684 33 1 0.7277 4.1530 2.8678 34 1 -1.7724 3.8198 4.5386 35 1 -1.1127 5.3596 3.9370 36 1 -4.2422 5.0863 5.3815 37 1 -2.9346 6.3087 5.2246 38 1 -4.8812 7.6285 4.6932 39 1 -5.6828 6.2636 3.8602 40 1 -2.1945 6.5721 2.2931 41 1 -3.5105 5.7340 1.4283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183816484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = -139.152143 kcal Electronic energy + Delta-G solvation = -21060.777659 eV Core-core repulsion = 17747.583838 eV Total energy + Delta-G solvation = -3313.193821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77161 -39.07757 -37.34856 -34.96845 -33.08977 -32.39639 -31.04315 -29.86708 -28.07504 -26.54032 -25.28841 -22.97661 -22.55313 -20.97192 -20.37738 -19.33482 -17.37517 -17.15993 -16.57400 -16.18392 -15.93442 -15.44442 -15.15190 -14.88825 -14.42705 -14.29998 -13.58741 -13.47348 -13.17599 -12.68883 -12.56195 -12.13243 -11.87442 -11.74932 -11.52895 -11.44891 -11.25969 -11.09229 -10.98273 -10.93432 -10.84044 -10.31054 -10.18577 -9.71662 -9.66534 -9.61403 -9.05603 -8.92241 -8.50772 -7.83203 -6.13320 -4.22897 3.20974 3.22881 3.31182 3.33536 3.37665 3.69612 4.17251 4.26180 4.39663 4.60253 4.75143 4.93007 4.99331 5.07693 5.17121 5.18196 5.27152 5.34724 5.40421 5.43821 5.51520 5.55217 5.61954 5.85486 5.96169 6.40170 6.46927 6.66971 6.80179 7.01911 7.05403 7.22423 7.37180 7.44495 7.61916 7.73434 7.89827 8.17476 8.64877 8.77541 9.13164 9.44597 10.92064 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037977 B = 0.003209 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.106291 B = 8722.802899 C = 8926.607158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.500 3.500 15 O -0.528 6.528 16 C 0.042 3.958 17 O -0.359 6.359 18 C 0.070 3.930 19 C -0.120 4.120 20 H 0.095 0.905 21 C -0.150 4.150 22 C 0.052 3.948 23 O -0.388 6.388 24 C 0.059 3.941 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 7.806 15.176 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.404 6.404 16 C -0.038 4.038 17 O -0.277 6.277 18 C -0.007 4.007 19 C -0.139 4.139 20 H 0.114 0.886 21 C -0.187 4.187 22 C -0.025 4.025 23 O -0.308 6.308 24 C -0.017 4.017 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.738 7.848 14.003 19.313 hybrid contribution 1.563 -0.315 0.686 1.736 sum -9.175 7.532 14.690 18.886 Atomic orbital electron populations 1.21844 0.98293 0.98047 1.01310 1.21942 0.92642 0.99788 1.02279 1.18800 0.94205 0.89148 0.80823 0.93252 1.21262 0.90661 1.38999 1.06320 0.92024 1.24895 0.98630 0.94816 0.95388 1.69905 1.35051 1.37611 1.09313 0.86397 0.84836 0.77760 0.78117 1.19761 1.20886 1.20875 1.46414 1.14275 1.56379 1.18752 1.19960 0.83142 0.79926 0.88594 1.90699 1.51082 1.58610 1.40042 1.22348 0.85261 0.98369 0.97794 1.88029 1.29456 1.74601 1.35657 1.22453 0.93861 0.96025 0.88371 1.22703 0.96656 0.98902 0.95590 0.88633 1.23271 0.99559 0.98536 0.97361 1.23333 0.95688 0.97958 0.85486 1.88406 1.58688 1.44189 1.39479 1.23172 0.93639 0.87404 0.97508 0.94295 0.93117 0.95844 0.88262 0.95039 0.92586 0.78011 0.91015 0.90907 0.92847 0.92926 0.89582 0.90074 0.89774 0.92122 0.90872 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.52 37.16 0.32 -2.80 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.63 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -14.35 5.02 -54.93 -0.28 -14.62 16 14 C 0.50 9.90 6.48 -10.99 -0.07 9.83 16 15 O -0.53 -12.73 13.64 -14.35 -0.20 -12.93 16 16 C 0.04 0.61 6.42 36.01 0.23 0.84 16 17 O -0.36 -5.46 9.72 -55.14 -0.54 -5.99 16 18 C 0.07 0.74 5.25 37.16 0.20 0.93 16 19 C -0.12 -1.20 3.29 -88.67 -0.29 -1.49 16 20 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 21 C -0.15 -1.10 6.62 -24.48 -0.16 -1.26 16 22 C 0.05 0.44 7.78 38.18 0.30 0.73 16 23 O -0.39 -4.73 11.36 -35.23 -0.40 -5.13 16 24 C 0.06 0.70 7.26 37.88 0.27 0.98 16 25 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 26 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.49 8.07 -51.93 -0.42 0.07 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.89 7.76 -51.93 -0.40 0.48 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -31.71 332.10 -7.46 -39.17 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.76 Total: 4.49 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 0.09 Total: -1.42 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.35 Total: -38.61 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -1.13 Total: -24.05 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.71 -7.46 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183816484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.979 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds