Wall clock time and date at job start Mon Mar 30 2020 00:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 117.00228 * 2 1 4 4 O 1.20826 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00059 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47167 * 179.97438 * 5 3 2 7 7 C 1.36937 * 119.99934 * 89.99949 * 6 5 3 8 8 H 1.07999 * 119.99701 * 31.07203 * 7 6 5 9 9 C 1.38813 * 119.99869 * 211.07446 * 7 6 5 10 10 N 1.31617 * 120.00064 * 40.68834 * 9 7 6 11 11 Si 1.86801 * 119.99815 * 220.67976 * 9 7 6 12 12 H 1.48497 * 109.46950 * 180.02562 * 11 9 7 13 13 H 1.48499 * 109.46939 * 60.00322 * 11 9 7 14 14 H 1.48502 * 109.47241 * 300.00155 * 11 9 7 15 15 C 1.46507 * 120.00027 * 270.00573 * 6 5 3 16 16 C 1.53004 * 109.46816 * 268.33482 * 15 6 5 17 17 H 1.09000 * 110.55036 * 59.29995 * 16 15 6 18 18 C 1.54985 * 110.61802 * 182.18018 * 16 15 6 19 19 C 1.54813 * 102.09557 * 155.52568 * 18 16 15 20 20 C 1.54102 * 104.18383 * 339.12071 * 19 18 16 21 21 C 1.52998 * 109.88170 * 117.39438 * 20 19 18 22 22 C 1.53007 * 109.87446 * 238.39684 * 20 19 18 23 23 O 1.43889 * 107.37796 * 358.09831 * 20 19 18 24 24 H 1.09002 * 109.46742 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46829 * 299.99754 * 1 2 3 26 26 H 1.09001 * 109.46829 * 59.99895 * 1 2 3 27 27 H 1.09005 * 109.47113 * 60.00334 * 5 3 2 28 28 H 1.08996 * 109.47037 * 300.00401 * 5 3 2 29 29 H 0.97002 * 119.99962 * 5.53864 * 10 9 7 30 30 H 1.09000 * 109.47263 * 28.33336 * 15 6 5 31 31 H 1.08996 * 109.46816 * 148.33921 * 15 6 5 32 32 H 1.09002 * 110.90931 * 273.72176 * 18 16 15 33 33 H 1.09006 * 110.90999 * 37.28953 * 18 16 15 34 34 H 1.09001 * 110.48619 * 97.79441 * 19 18 16 35 35 H 1.09000 * 110.48644 * 220.31308 * 19 18 16 36 36 H 1.09002 * 109.47114 * 59.99533 * 21 20 19 37 37 H 1.08994 * 109.47171 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.46602 * 300.00074 * 21 20 19 39 39 H 1.09000 * 109.47081 * 60.00000 * 22 20 19 40 40 H 1.09000 * 109.46842 * 179.97438 * 22 20 19 41 41 H 1.08997 * 109.46916 * 299.99932 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1755 3.3370 1.1854 8 1 4.5178 2.7942 2.0541 9 6 3.9317 4.7009 1.2707 10 7 2.8827 5.2208 0.6692 11 14 5.0922 5.7984 2.2392 12 1 4.6133 7.2026 2.1765 13 1 6.4555 5.7134 1.6565 14 1 5.1302 5.3515 3.6549 15 6 4.1900 3.3813 -1.2693 16 6 5.6555 3.2515 -1.6894 17 1 5.9290 2.2027 -1.8045 18 6 5.9178 4.0313 -3.0028 19 6 7.4357 4.3215 -2.9101 20 6 7.7546 4.1881 -1.4084 21 6 8.7447 3.0430 -1.1864 22 6 8.3478 5.4975 -0.8842 23 8 6.5185 3.8998 -0.7305 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.9565 0.7805 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 2.2367 4.6423 0.2346 30 1 3.5519 2.9422 -2.0362 31 1 3.9390 4.4350 -1.1473 32 1 5.6922 3.4148 -3.8730 33 1 5.3447 4.9582 -3.0261 34 1 8.0001 3.5886 -3.4866 35 1 7.6532 5.3306 -3.2602 36 1 9.6653 3.2476 -1.7329 37 1 8.9658 2.9549 -0.1228 38 1 8.3085 2.1109 -1.5457 39 1 7.6304 6.3052 -1.0293 40 1 8.5704 5.3960 0.1780 41 1 9.2649 5.7241 -1.4280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187124309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:22 Heat of formation + Delta-G solvation = -112.073032 kcal Electronic energy + Delta-G solvation = -22616.947219 eV Core-core repulsion = 19304.927636 eV Total energy + Delta-G solvation = -3312.019583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.50546 -39.21737 -36.15912 -35.05494 -32.57496 -31.57036 -31.23518 -28.50644 -27.22992 -27.01589 -25.70568 -23.63658 -21.72555 -20.57817 -19.76138 -19.42072 -17.32011 -16.74137 -15.87851 -15.80330 -15.61143 -14.87185 -14.44883 -14.00107 -13.86110 -13.47203 -13.22976 -13.04061 -12.91282 -12.64728 -12.33360 -11.86211 -11.77318 -11.68151 -11.48373 -11.23993 -11.07176 -11.00130 -10.65513 -10.50479 -10.30376 -10.20762 -10.10416 -10.05054 -9.88214 -9.62408 -9.44550 -8.86144 -8.09578 -6.91910 -6.05149 -3.13038 3.22213 3.49010 3.60887 3.72637 3.87803 4.40015 4.72123 4.97901 5.07298 5.17016 5.28098 5.47112 5.51482 5.52639 5.56572 5.57719 5.70012 5.76516 5.83615 5.91000 5.96537 5.99841 6.04911 6.09352 6.12574 6.20930 6.25302 6.26099 6.43317 6.51711 6.55326 6.60940 6.66911 7.17587 7.23539 7.81731 8.13600 8.63349 8.80630 9.14061 9.89719 10.25698 11.22007 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.007251 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.621088 B = 3860.527053 C = 4814.127398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.410 3.590 4 O -0.489 6.489 5 C 0.148 3.852 6 N -0.546 5.546 7 C -0.368 4.368 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.879 5.879 11 Si 1.043 2.957 12 H -0.293 1.293 13 H -0.278 1.278 14 H -0.297 1.297 15 C 0.149 3.851 16 C 0.069 3.931 17 H 0.051 0.949 18 C -0.152 4.152 19 C -0.142 4.142 20 C 0.086 3.914 21 C -0.157 4.157 22 C -0.140 4.140 23 O -0.318 6.318 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.283 0.717 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 -6.042 -7.148 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.301 6.301 3 C 0.248 3.752 4 O -0.373 6.373 5 C 0.018 3.982 6 N -0.264 5.264 7 C -0.496 4.496 8 H 0.072 0.928 9 C -0.196 4.196 10 N -0.514 5.514 11 Si 0.872 3.128 12 H -0.219 1.219 13 H -0.205 1.205 14 H -0.224 1.224 15 C 0.022 3.978 16 C 0.009 3.991 17 H 0.069 0.931 18 C -0.191 4.191 19 C -0.180 4.180 20 C 0.045 3.955 21 C -0.214 4.214 22 C -0.197 4.197 23 O -0.236 6.236 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.783 -4.068 -6.492 10.233 hybrid contribution -0.688 -1.672 -0.595 1.903 sum 6.096 -5.740 -7.087 10.970 Atomic orbital electron populations 1.23007 0.79420 1.01966 1.01692 1.86674 1.21542 1.36661 1.85177 1.27440 0.94894 0.80766 0.72076 1.90615 1.66695 1.36328 1.43664 1.21259 0.84283 0.90703 1.01993 1.44032 1.72011 1.07204 1.03104 1.19514 1.45789 0.93726 0.90525 0.92814 1.25619 0.97044 0.96582 1.00309 1.70695 1.06641 1.40873 1.33209 0.83943 0.77698 0.75829 0.75327 1.21882 1.20458 1.22444 1.21002 0.89981 1.00372 0.86443 1.23784 0.94325 0.94593 0.86421 0.93137 1.23171 0.95670 1.01471 0.98776 1.22977 0.96638 1.01883 0.96532 1.22096 0.87773 0.94530 0.91064 1.22209 0.98392 0.98562 1.02261 1.21864 0.99821 0.96365 1.01670 1.89321 1.22877 1.78285 1.33161 0.89559 0.92796 0.92978 0.90724 0.89475 0.90592 0.93973 0.89915 0.91295 0.90605 0.91474 0.91130 0.92723 0.92053 0.92726 0.92035 0.91999 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 101.05 1.07 1.59 16 2 O -0.38 -7.17 10.57 -39.26 -0.41 -7.59 16 3 C 0.41 8.99 8.03 36.00 0.29 9.28 16 4 O -0.49 -12.68 15.60 -18.75 -0.29 -12.97 16 5 C 0.15 3.09 6.25 -5.20 -0.03 3.06 16 6 N -0.55 -13.38 1.82 -174.61 -0.32 -13.70 16 7 C -0.37 -10.24 8.71 -15.06 -0.13 -10.38 16 8 H 0.05 1.55 8.06 -52.49 -0.42 1.12 16 9 C 0.01 0.36 4.46 -17.43 -0.08 0.28 16 10 N -0.88 -26.90 12.28 55.49 0.68 -26.22 16 11 Si 1.04 26.11 30.06 -169.99 -5.11 21.00 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 15 C 0.15 3.37 4.98 -4.04 -0.02 3.35 16 16 C 0.07 1.33 3.53 -25.68 -0.09 1.24 16 17 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 18 C -0.15 -2.41 6.59 -24.73 -0.16 -2.57 16 19 C -0.14 -2.01 6.27 -25.20 -0.16 -2.17 16 20 C 0.09 1.41 1.20 -90.04 -0.11 1.30 16 21 C -0.16 -2.23 8.60 37.16 0.32 -1.91 16 22 C -0.14 -2.18 8.68 37.16 0.32 -1.86 16 23 O -0.32 -6.77 10.00 -35.23 -0.35 -7.13 16 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 27 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 28 H 0.09 1.75 8.04 -51.93 -0.42 1.33 16 29 H 0.28 8.97 7.63 -40.82 -0.31 8.66 16 30 H 0.04 0.89 8.06 -51.93 -0.42 0.47 16 31 H 0.08 2.18 5.82 -51.93 -0.30 1.88 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 34 H 0.07 0.82 7.70 -51.93 -0.40 0.42 16 35 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -32.95 338.13 -6.44 -39.39 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.95 Total: 0.89 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 1.22 Total: 1.22 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.36 Total: -39.92 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.06 Total: -27.68 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.11 Total: 21.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.95 -6.44 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187124309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.682 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds