Wall clock time and date at job start Mon Mar 30 2020 00:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 117.00228 * 2 1 4 4 O 1.20826 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00059 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47167 * 179.97438 * 5 3 2 7 7 C 1.36937 * 119.99934 * 89.99949 * 6 5 3 8 8 H 1.07999 * 119.99701 * 31.07203 * 7 6 5 9 9 C 1.38813 * 119.99869 * 211.07446 * 7 6 5 10 10 N 1.31617 * 120.00064 * 40.68834 * 9 7 6 11 11 Si 1.86801 * 119.99815 * 220.67976 * 9 7 6 12 12 H 1.48497 * 109.46950 * 180.02562 * 11 9 7 13 13 H 1.48499 * 109.46939 * 60.00322 * 11 9 7 14 14 H 1.48502 * 109.47241 * 300.00155 * 11 9 7 15 15 C 1.46507 * 120.00027 * 270.00573 * 6 5 3 16 16 C 1.53004 * 109.46816 * 268.33482 * 15 6 5 17 17 H 1.09000 * 110.55036 * 59.29995 * 16 15 6 18 18 C 1.54985 * 110.61802 * 182.18018 * 16 15 6 19 19 C 1.54813 * 102.09557 * 155.52568 * 18 16 15 20 20 C 1.54102 * 104.18383 * 339.12071 * 19 18 16 21 21 C 1.52998 * 109.88170 * 117.39438 * 20 19 18 22 22 C 1.53007 * 109.87446 * 238.39684 * 20 19 18 23 23 O 1.43889 * 107.37796 * 358.09831 * 20 19 18 24 24 H 1.09002 * 109.46742 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46829 * 299.99754 * 1 2 3 26 26 H 1.09001 * 109.46829 * 59.99895 * 1 2 3 27 27 H 1.09005 * 109.47113 * 60.00334 * 5 3 2 28 28 H 1.08996 * 109.47037 * 300.00401 * 5 3 2 29 29 H 0.97002 * 119.99962 * 5.53864 * 10 9 7 30 30 H 1.09000 * 109.47263 * 28.33336 * 15 6 5 31 31 H 1.08996 * 109.46816 * 148.33921 * 15 6 5 32 32 H 1.09002 * 110.90931 * 273.72176 * 18 16 15 33 33 H 1.09006 * 110.90999 * 37.28953 * 18 16 15 34 34 H 1.09001 * 110.48619 * 97.79441 * 19 18 16 35 35 H 1.09000 * 110.48644 * 220.31308 * 19 18 16 36 36 H 1.09002 * 109.47114 * 59.99533 * 21 20 19 37 37 H 1.08994 * 109.47171 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.46602 * 300.00074 * 21 20 19 39 39 H 1.09000 * 109.47081 * 60.00000 * 22 20 19 40 40 H 1.09000 * 109.46842 * 179.97438 * 22 20 19 41 41 H 1.08997 * 109.46916 * 299.99932 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1755 3.3370 1.1854 8 1 4.5178 2.7942 2.0541 9 6 3.9317 4.7009 1.2707 10 7 2.8827 5.2208 0.6692 11 14 5.0922 5.7984 2.2392 12 1 4.6133 7.2026 2.1765 13 1 6.4555 5.7134 1.6565 14 1 5.1302 5.3515 3.6549 15 6 4.1900 3.3813 -1.2693 16 6 5.6555 3.2515 -1.6894 17 1 5.9290 2.2027 -1.8045 18 6 5.9178 4.0313 -3.0028 19 6 7.4357 4.3215 -2.9101 20 6 7.7546 4.1881 -1.4084 21 6 8.7447 3.0430 -1.1864 22 6 8.3478 5.4975 -0.8842 23 8 6.5185 3.8998 -0.7305 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.9565 0.7805 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 2.2367 4.6423 0.2346 30 1 3.5519 2.9422 -2.0362 31 1 3.9390 4.4350 -1.1473 32 1 5.6922 3.4148 -3.8730 33 1 5.3447 4.9582 -3.0261 34 1 8.0001 3.5886 -3.4866 35 1 7.6532 5.3306 -3.2602 36 1 9.6653 3.2476 -1.7329 37 1 8.9658 2.9549 -0.1228 38 1 8.3085 2.1109 -1.5457 39 1 7.6304 6.3052 -1.0293 40 1 8.5704 5.3960 0.1780 41 1 9.2649 5.7241 -1.4280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187124309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:21 Heat of formation + Delta-G solvation = -132.443561 kcal Electronic energy + Delta-G solvation = -22617.830551 eV Core-core repulsion = 19304.927636 eV Total energy + Delta-G solvation = -3312.902915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19324 -40.60157 -37.89547 -36.85151 -34.02113 -33.36128 -32.78551 -30.07176 -28.71167 -28.18841 -27.42892 -25.25551 -23.39477 -22.06370 -21.44303 -20.73433 -19.30923 -18.44347 -17.44583 -17.40961 -17.15510 -16.20752 -16.02434 -15.72378 -15.48626 -15.34888 -14.56675 -14.46520 -14.29896 -14.22016 -13.71975 -13.52765 -13.13162 -12.94071 -12.90270 -12.76213 -12.56440 -12.48354 -12.33151 -12.17718 -11.94276 -11.77251 -11.67247 -11.59401 -11.46104 -11.35194 -11.31168 -10.27906 -10.21595 -8.93226 -8.23321 -5.29250 1.47249 1.55923 1.66800 1.85429 1.99584 2.69111 3.08032 3.18366 3.57180 3.77077 3.95296 4.04605 4.16990 4.28363 4.29536 4.34409 4.34978 4.39791 4.50339 4.54810 4.63470 4.66454 4.69167 4.79710 4.85763 4.87259 4.95426 5.00554 5.08255 5.18911 5.22186 5.37123 5.45421 5.50751 5.55590 5.96197 6.44334 6.52332 7.01105 7.13383 7.81422 8.19789 8.98890 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.007251 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.621088 B = 3860.527053 C = 4814.127398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.416 3.584 4 O -0.535 6.535 5 C 0.146 3.854 6 N -0.563 5.563 7 C -0.358 4.358 8 H 0.039 0.961 9 C -0.032 4.032 10 N -0.912 5.912 11 Si 1.081 2.919 12 H -0.301 1.301 13 H -0.268 1.268 14 H -0.285 1.285 15 C 0.152 3.848 16 C 0.072 3.928 17 H 0.065 0.935 18 C -0.148 4.148 19 C -0.132 4.132 20 C 0.070 3.930 21 C -0.150 4.150 22 C -0.140 4.140 23 O -0.363 6.363 24 H 0.134 0.866 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.264 0.736 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.539 -7.889 -8.571 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C 0.257 3.743 4 O -0.423 6.423 5 C 0.016 3.984 6 N -0.281 5.281 7 C -0.487 4.487 8 H 0.057 0.943 9 C -0.234 4.234 10 N -0.550 5.550 11 Si 0.908 3.092 12 H -0.228 1.228 13 H -0.194 1.194 14 H -0.211 1.211 15 C 0.026 3.974 16 C 0.013 3.987 17 H 0.083 0.917 18 C -0.186 4.186 19 C -0.169 4.169 20 C 0.030 3.970 21 C -0.207 4.207 22 C -0.197 4.197 23 O -0.283 6.283 24 H 0.152 0.848 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.589 -5.967 -7.920 13.119 hybrid contribution -1.312 -1.284 -0.168 1.844 sum 7.277 -7.251 -8.088 13.075 Atomic orbital electron populations 1.23350 0.76939 1.04962 1.01241 1.86600 1.23712 1.34419 1.84381 1.27248 0.95332 0.80812 0.70920 1.90625 1.67744 1.37999 1.45947 1.21327 0.83771 0.88950 1.04307 1.44070 1.73234 1.08145 1.02683 1.19519 1.44023 0.93913 0.91205 0.94327 1.26539 0.97496 0.98191 1.01200 1.70809 1.07758 1.40266 1.36128 0.83406 0.76646 0.74087 0.75049 1.22817 1.19407 1.21135 1.20936 0.92788 0.97693 0.85977 1.23626 0.91686 0.95783 0.87616 0.91686 1.23134 0.96939 1.00585 0.97981 1.22955 0.95289 1.03595 0.95108 1.22458 0.86594 0.95541 0.92363 1.22148 0.99043 0.97660 1.01856 1.21906 1.00922 0.95635 1.01241 1.89260 1.25057 1.78778 1.35169 0.84765 0.93835 0.92999 0.86774 0.88570 0.92627 0.93196 0.94188 0.88425 0.92557 0.88534 0.89934 0.89592 0.93512 0.92570 0.93902 0.93661 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.56 113.37 1.20 2.03 16 2 O -0.37 -13.31 10.57 -51.41 -0.54 -13.85 16 3 C 0.42 18.03 8.03 71.23 0.57 18.60 16 4 O -0.54 -28.30 15.60 21.96 0.34 -27.95 16 5 C 0.15 5.93 6.25 85.63 0.54 6.47 16 6 N -0.56 -27.81 1.82 -706.33 -1.28 -29.09 16 7 C -0.36 -20.36 8.71 84.03 0.73 -19.63 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 9 C -0.03 -1.90 4.46 84.86 0.38 -1.52 16 10 N -0.91 -58.33 12.28 21.65 0.27 -58.07 16 11 Si 1.08 54.48 30.06 68.60 2.06 56.54 16 12 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 13 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 15 C 0.15 6.99 4.98 86.38 0.43 7.42 16 16 C 0.07 2.71 3.53 31.27 0.11 2.82 16 17 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 18 C -0.15 -4.39 6.59 31.89 0.21 -4.18 16 19 C -0.13 -3.28 6.27 31.59 0.20 -3.09 16 20 C 0.07 2.16 1.20 -10.42 -0.01 2.15 16 21 C -0.15 -3.82 8.60 71.98 0.62 -3.20 16 22 C -0.14 -4.15 8.68 71.98 0.62 -3.52 16 23 O -0.36 -15.31 10.00 -148.98 -1.49 -16.80 16 24 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.04 1.35 8.13 -2.39 -0.02 1.33 16 26 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.11 3.71 8.07 -2.38 -0.02 3.69 16 28 H 0.10 3.73 8.04 -2.39 -0.02 3.72 16 29 H 0.26 17.63 7.63 -92.71 -0.71 16.92 16 30 H 0.05 2.13 8.06 -2.39 -0.02 2.11 16 31 H 0.04 2.21 5.82 -2.39 -0.01 2.19 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 1.87 8.06 -2.38 -0.02 1.86 16 34 H 0.10 1.86 7.70 -2.39 -0.02 1.84 16 35 H 0.08 1.87 7.70 -2.39 -0.02 1.85 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -75.32 338.13 6.00 -69.33 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.05 Total: 15.55 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.59 Total: 4.35 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -1.02 Total: -87.16 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -1.69 Total: -58.60 kcal Atomic # 14 Polarization: 54.48 SS G_CDS: 2.06 Total: 56.54 kcal Total: -75.32 6.00 -69.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187124309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.117 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds