Wall clock time and date at job start Mon Mar 30 2020 01:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46822 * 2 1 4 4 H 1.09000 * 109.47585 * 304.99831 * 3 2 1 5 5 C 1.50702 * 109.46836 * 184.99818 * 3 2 1 6 6 H 1.07998 * 120.00002 * 240.00013 * 5 3 2 7 7 C 1.37880 * 119.99814 * 60.00396 * 5 3 2 8 8 N 1.31513 * 119.99885 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99891 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47092 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46890 * 119.99936 * 9 7 5 12 12 H 1.48491 * 109.46919 * 239.99925 * 9 7 5 13 13 N 1.46900 * 109.47123 * 65.00149 * 3 2 1 14 14 C 1.47015 * 111.00069 * 56.36014 * 13 3 2 15 15 C 1.53097 * 109.26158 * 182.38988 * 14 13 3 16 16 O 1.43013 * 109.25870 * 303.15664 * 15 14 13 17 17 C 1.43017 * 113.74055 * 58.66803 * 16 15 14 18 18 H 1.08996 * 109.50559 * 61.26309 * 17 16 15 19 19 C 1.53002 * 109.50633 * 181.39728 * 17 16 15 20 20 C 1.50701 * 109.46673 * 294.77810 * 19 17 16 21 21 O 1.20818 * 120.00202 * 0.02562 * 20 19 17 22 22 O 1.34231 * 119.99533 * 180.02562 * 20 19 17 23 23 C 1.45207 * 116.99798 * 180.02562 * 22 20 19 24 24 C 1.47016 * 111.00239 * 179.97438 * 13 3 2 25 25 H 1.08995 * 109.47093 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47258 * 299.99780 * 1 2 3 27 27 H 1.09005 * 109.47071 * 59.99712 * 1 2 3 28 28 H 1.09001 * 109.46898 * 240.00542 * 2 1 3 29 29 H 1.08992 * 109.47210 * 119.99979 * 2 1 3 30 30 H 0.96997 * 119.99578 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.50762 * 302.33252 * 14 13 3 32 32 H 1.09010 * 109.50807 * 62.45600 * 14 13 3 33 33 H 1.08991 * 109.51223 * 183.21641 * 15 14 13 34 34 H 1.09003 * 109.53977 * 63.10856 * 15 14 13 35 35 H 1.08997 * 109.47282 * 54.77880 * 19 17 16 36 36 H 1.08998 * 109.46990 * 174.78286 * 19 17 16 37 37 H 1.09003 * 109.46974 * 300.00026 * 23 22 20 38 38 H 1.08999 * 109.47127 * 59.99690 * 23 22 20 39 39 H 1.08998 * 109.47123 * 180.02562 * 23 22 20 40 40 H 1.09004 * 109.50347 * 297.54426 * 24 13 3 41 41 H 1.08999 * 109.50027 * 57.67027 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8813 -1.3818 10 1 6.5987 1.5463 -0.1942 11 1 6.4970 -0.5174 -1.4630 12 1 6.3989 1.6168 -2.6101 13 7 1.6513 2.0993 1.2552 14 6 2.1484 1.3495 2.4180 15 6 1.6716 2.0340 3.7018 16 8 2.1152 3.3936 3.7042 17 6 1.6489 4.1534 2.5859 18 1 0.5595 4.1873 2.5978 19 6 2.2062 5.5760 2.6666 20 6 1.6386 6.2697 3.8781 21 8 0.8679 5.6861 4.6028 22 8 1.9894 7.5361 4.1520 23 6 1.4043 8.1409 5.3354 24 6 2.1260 3.4902 1.2911 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8292 -0.0608 -2.9499 31 1 1.7645 0.3299 2.3849 32 1 3.2382 1.3295 2.3994 33 1 2.0850 1.5147 4.5663 34 1 0.5829 2.0063 3.7469 35 1 3.2926 5.5367 2.7461 36 1 1.9273 6.1270 1.7685 37 1 0.3186 8.1521 5.2387 38 1 1.6847 7.5624 6.2156 39 1 1.7699 9.1624 5.4399 40 1 3.2153 3.5041 1.2547 41 1 1.7256 4.0335 0.4352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228486845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:51 Heat of formation + Delta-G solvation = -129.152767 kcal Electronic energy + Delta-G solvation = -22112.131765 eV Core-core repulsion = 18799.371550 eV Total energy + Delta-G solvation = -3312.760215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44437 -39.03420 -36.53858 -35.89981 -32.81570 -32.54095 -31.14349 -29.01077 -27.73561 -26.67768 -24.87671 -22.98427 -22.65995 -20.89367 -19.99751 -18.97537 -17.48211 -16.71154 -16.64075 -16.28265 -15.70967 -15.59433 -14.62149 -14.33189 -14.23965 -13.63757 -13.44520 -13.27754 -13.17682 -12.76225 -12.26014 -12.05050 -12.02267 -11.71837 -11.43381 -11.23745 -10.94608 -10.88650 -10.82518 -10.73259 -10.62858 -10.38602 -10.33387 -9.76077 -9.72601 -9.54204 -9.21967 -8.86409 -8.40190 -7.21668 -6.03036 -4.16646 2.32425 2.72140 3.23079 3.32272 3.35630 4.09294 4.36364 4.79125 4.82016 5.00398 5.07088 5.20827 5.23876 5.32898 5.41428 5.57401 5.60207 5.76715 5.85873 5.94733 6.07367 6.16484 6.33357 6.40317 6.42200 6.50785 6.63192 6.66637 6.78445 7.03517 7.14659 7.24616 7.56284 7.63271 7.71075 7.83792 7.89033 8.08664 8.23565 8.38834 8.92709 9.51227 10.96138 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.005046 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.330043 B = 5547.766452 C = 6268.337620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.213 3.787 4 H 0.041 0.959 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.021 3.979 15 C 0.068 3.932 16 O -0.382 6.382 17 C 0.105 3.895 18 H 0.068 0.932 19 C -0.106 4.106 20 C 0.462 3.538 21 O -0.494 6.494 22 O -0.366 6.366 23 C 0.036 3.964 24 C 0.034 3.966 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.034 0.966 30 H 0.261 0.739 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 9.834 9.574 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.107 3.893 4 H 0.059 0.941 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.255 5.255 14 C -0.108 4.108 15 C -0.009 4.009 16 O -0.301 6.301 17 C 0.046 3.954 18 H 0.086 0.914 19 C -0.144 4.144 20 C 0.305 3.695 21 O -0.380 6.380 22 O -0.283 6.283 23 C -0.058 4.058 24 C -0.095 4.095 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.128 9.657 9.801 14.366 hybrid contribution 1.754 -0.188 -0.280 1.786 sum -2.374 9.469 9.521 13.636 Atomic orbital electron populations 1.21721 0.98764 0.98520 1.00641 1.21663 0.92323 0.99143 1.02165 1.19315 0.93223 0.91134 0.85584 0.94122 1.21755 0.92771 1.38221 1.05527 0.92469 1.24900 0.97838 0.94949 0.95652 1.69879 1.34733 1.38255 1.09417 0.86627 0.86165 0.77767 0.77995 1.19915 1.21005 1.20983 1.62715 1.57948 1.00729 1.04140 1.22652 0.99245 0.98371 0.90539 1.22653 0.98670 0.81777 0.97768 1.87891 1.74632 1.22615 1.44928 1.21923 0.98236 0.88064 0.87129 0.91437 1.21463 1.03735 0.94608 0.94586 1.23776 0.79134 0.79644 0.86993 1.90676 1.33020 1.65234 1.49087 1.86516 1.66993 1.29149 1.45653 1.23199 0.98805 0.97929 0.85819 1.22502 0.99713 0.91766 0.95534 0.95507 0.93465 0.94093 0.88809 0.94708 0.92910 0.90096 0.93529 0.89659 0.93215 0.86872 0.86238 0.92091 0.92031 0.88405 0.92977 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.80 37.16 0.36 -2.40 16 2 C -0.11 -2.63 4.94 -26.73 -0.13 -2.76 16 3 C 0.21 5.07 1.82 -68.86 -0.13 4.95 16 4 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 5 C -0.54 -14.06 7.10 -34.44 -0.24 -14.31 16 6 H 0.06 1.51 5.79 -52.49 -0.30 1.20 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.24 11.29 55.43 0.63 -23.62 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.53 -10.89 4.21 -227.71 -0.96 -11.85 16 14 C 0.02 0.40 4.95 -3.71 -0.02 0.38 16 15 C 0.07 1.16 7.01 37.21 0.26 1.42 16 16 O -0.38 -6.92 9.72 -49.41 -0.48 -7.40 16 17 C 0.10 1.72 2.35 -26.68 -0.06 1.66 16 18 H 0.07 1.16 7.95 -51.93 -0.41 0.74 16 19 C -0.11 -1.39 5.53 -27.88 -0.15 -1.55 16 20 C 0.46 6.60 7.84 36.01 0.28 6.88 16 21 O -0.49 -8.50 15.18 -23.98 -0.36 -8.86 16 22 O -0.37 -4.51 10.57 -39.26 -0.41 -4.93 16 23 C 0.04 0.34 10.56 101.05 1.07 1.40 16 24 C 0.03 0.63 4.59 -3.71 -0.02 0.61 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.09 2.42 5.95 -51.93 -0.31 2.12 16 29 H 0.03 0.78 6.02 -51.93 -0.31 0.47 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.08 1.54 6.00 -51.93 -0.31 1.23 16 32 H 0.05 0.99 6.78 -51.92 -0.35 0.64 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 1.06 6.55 -51.93 -0.34 0.72 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -29.72 324.26 -7.13 -36.85 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.53 Total: 1.22 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 1.13 Total: -1.98 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.33 Total: -35.46 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.26 Total: -21.19 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.72 -7.13 -36.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228486845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.304 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds