Wall clock time and date at job start Mon Mar 30 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47022 * 125.65265 * 0.02951 * 8 6 5 10 10 C 1.54323 * 107.27004 * 181.02245 * 9 8 6 11 11 C 1.55150 * 102.94734 * 22.18774 * 10 9 8 12 12 H 1.09000 * 111.00390 * 82.56908 * 11 10 9 13 13 O 1.42897 * 111.00862 * 206.38471 * 11 10 9 14 14 C 1.42895 * 114.00300 * 210.00156 * 13 11 10 15 15 C 1.50699 * 109.47359 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99857 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00407 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00087 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00492 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46593 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47201 * 119.99531 * 19 17 15 22 22 H 1.48498 * 109.47174 * 240.00270 * 19 17 15 23 23 C 1.47424 * 125.64487 * 179.71369 * 8 6 5 24 24 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 25 25 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 30 30 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 32 32 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.87664 * 300.43712 * 9 8 6 34 34 H 1.08998 * 109.88287 * 61.44854 * 9 8 6 35 35 H 1.09002 * 110.71764 * 140.55630 * 10 9 8 36 36 H 1.09005 * 110.71931 * 263.64799 * 10 9 8 37 37 H 1.09002 * 109.47119 * 300.00233 * 14 13 11 38 38 H 1.08996 * 109.46990 * 60.00089 * 14 13 11 39 39 H 0.96997 * 119.99834 * 180.02562 * 18 17 15 40 40 H 1.08994 * 110.37083 * 274.75249 * 23 8 6 41 41 H 1.08999 * 110.36621 * 37.07340 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9153 -2.1415 3.4980 10 6 3.1511 -3.2952 4.4955 11 6 2.8923 -4.5587 3.6330 12 1 3.7766 -4.8242 3.0537 13 8 2.4671 -5.6549 4.4450 14 6 2.8430 -6.9359 3.9354 15 6 2.3454 -8.0123 4.8653 16 1 1.7972 -7.7449 5.7567 17 6 2.5907 -9.3384 4.5789 18 7 3.2587 -9.6641 3.4937 19 14 1.9745 -10.6727 5.7319 20 1 1.2574 -10.0485 6.8728 21 1 1.0493 -11.5729 4.9979 22 1 3.1275 -11.4572 6.2423 23 6 1.7430 -4.0731 2.7110 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 3.8680 -1.8026 3.0911 34 1 2.4103 -1.3144 3.9970 35 1 4.1770 -3.2831 4.8636 36 1 2.4449 -3.2392 5.3239 37 1 2.4033 -7.0775 2.9481 38 1 3.9289 -6.9929 3.8611 39 1 3.4309 -10.5971 3.2920 40 1 0.7852 -4.1417 3.2266 41 1 1.7224 -4.6578 1.7913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238103811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:37 Heat of formation + Delta-G solvation = -129.794762 kcal Electronic energy + Delta-G solvation = -21326.596394 eV Core-core repulsion = 18013.808340 eV Total energy + Delta-G solvation = -3312.788054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77569 -38.77545 -36.82230 -35.70790 -34.08827 -32.74901 -30.75075 -28.59442 -27.58277 -27.51424 -27.03785 -23.95882 -22.40691 -21.59689 -20.66027 -19.37511 -17.91368 -16.84830 -16.54097 -16.41173 -15.83710 -15.07532 -14.77408 -14.56293 -14.30131 -13.85331 -13.79577 -13.46579 -13.03283 -12.82956 -12.67858 -12.45830 -12.23203 -12.04802 -12.02255 -11.71687 -11.60810 -11.48865 -11.38343 -11.14290 -10.83573 -10.80320 -10.46211 -10.37712 -10.05770 -9.99835 -9.17556 -8.99346 -8.63775 -8.25693 -6.15438 -4.17843 2.08401 2.88960 3.27325 3.34039 3.39983 3.84949 4.30028 4.55771 4.59715 4.64664 4.73967 4.77155 4.87920 5.19575 5.21588 5.27447 5.36009 5.38098 5.44676 5.50674 5.58347 5.66925 5.70612 5.74306 5.79372 5.95943 6.05226 6.14020 6.16150 6.19107 6.25900 6.29880 6.45837 7.02138 7.34016 7.54049 7.74242 8.07379 8.37648 8.44813 8.94310 9.47278 10.95952 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.039136 B = 0.003313 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.273218 B = 8449.829911 C = 8766.731552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.666 3.334 7 O -0.568 6.568 8 N -0.601 5.601 9 C 0.109 3.891 10 C -0.131 4.131 11 C 0.080 3.920 12 H 0.073 0.927 13 O -0.375 6.375 14 C 0.192 3.808 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.105 3.895 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.264 0.736 40 H 0.080 0.920 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 21.081 -5.435 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.421 3.579 7 O -0.457 6.457 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.169 4.169 11 C 0.019 3.981 12 H 0.091 0.909 13 O -0.293 6.293 14 C 0.118 3.882 15 C -0.555 4.555 16 H 0.086 0.914 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.736 3.264 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.017 4.017 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.900 20.876 -5.729 21.667 hybrid contribution -0.121 -0.792 0.132 0.812 sum -1.021 20.084 -5.597 20.875 Atomic orbital electron populations 1.22517 0.94065 1.05196 1.02288 1.22046 0.94373 0.91455 0.82317 1.21845 1.02205 0.92605 1.02975 1.22520 1.01551 1.03670 0.96367 1.86299 1.71642 1.23649 1.46211 1.17473 0.78891 0.80290 0.81206 1.90902 1.41469 1.70419 1.42916 1.47054 1.52942 1.13199 1.21090 1.22031 0.94560 0.97101 0.87696 1.22760 1.03447 0.92713 0.97972 1.22982 0.94838 0.88542 0.91719 0.90895 1.87929 1.78646 1.15063 1.47706 1.20362 0.94816 0.77983 0.95040 1.21065 1.35913 0.89814 1.08721 0.91374 1.24953 0.95158 0.98614 0.95737 1.69971 1.40179 1.18231 1.25200 0.86271 0.78538 0.81064 0.80573 1.19439 1.20797 1.20822 1.22862 1.00117 0.78072 1.00640 0.92247 0.91252 0.89272 0.91513 0.90244 0.91537 0.89262 0.91247 0.92193 0.91220 0.91153 0.89526 0.89408 0.97344 0.97346 0.92612 0.90139 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 2 C 0.13 1.48 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 4 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 5 O -0.36 -4.94 9.49 -40.32 -0.38 -5.32 16 6 C 0.67 10.62 7.93 54.05 0.43 11.05 16 7 O -0.57 -10.24 12.14 -19.28 -0.23 -10.47 16 8 N -0.60 -9.22 3.32 -176.16 -0.59 -9.81 16 9 C 0.11 1.34 6.89 -3.06 -0.02 1.32 16 10 C -0.13 -1.76 6.68 -24.90 -0.17 -1.93 16 11 C 0.08 1.40 3.56 -24.46 -0.09 1.32 16 12 H 0.07 1.28 7.83 -51.93 -0.41 0.88 16 13 O -0.38 -8.53 10.14 -35.23 -0.36 -8.89 16 14 C 0.19 5.08 5.53 36.01 0.20 5.28 16 15 C -0.52 -14.86 9.43 -34.44 -0.32 -15.19 16 16 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 19 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.10 1.79 6.65 -2.41 -0.02 1.77 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -31.69 335.79 -6.92 -38.61 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.90 Total: -2.36 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 0.76 Total: 2.40 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.15 Total: -35.55 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.97 Total: -24.68 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.69 -6.92 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238103811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.186 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds