Wall clock time and date at job start Mon Mar 30 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47022 * 125.65265 * 0.02951 * 8 6 5 10 10 C 1.54323 * 107.27004 * 181.02245 * 9 8 6 11 11 C 1.55150 * 102.94734 * 22.18774 * 10 9 8 12 12 H 1.09000 * 111.00390 * 82.56908 * 11 10 9 13 13 O 1.42897 * 111.00862 * 206.38471 * 11 10 9 14 14 C 1.42895 * 114.00300 * 210.00156 * 13 11 10 15 15 C 1.50699 * 109.47359 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99857 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00407 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00087 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00492 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46593 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47201 * 119.99531 * 19 17 15 22 22 H 1.48498 * 109.47174 * 240.00270 * 19 17 15 23 23 C 1.47424 * 125.64487 * 179.71369 * 8 6 5 24 24 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 25 25 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 30 30 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 32 32 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.87664 * 300.43712 * 9 8 6 34 34 H 1.08998 * 109.88287 * 61.44854 * 9 8 6 35 35 H 1.09002 * 110.71764 * 140.55630 * 10 9 8 36 36 H 1.09005 * 110.71931 * 263.64799 * 10 9 8 37 37 H 1.09002 * 109.47119 * 300.00233 * 14 13 11 38 38 H 1.08996 * 109.46990 * 60.00089 * 14 13 11 39 39 H 0.96997 * 119.99834 * 180.02562 * 18 17 15 40 40 H 1.08994 * 110.37083 * 274.75249 * 23 8 6 41 41 H 1.08999 * 110.36621 * 37.07340 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9153 -2.1415 3.4980 10 6 3.1511 -3.2952 4.4955 11 6 2.8923 -4.5587 3.6330 12 1 3.7766 -4.8242 3.0537 13 8 2.4671 -5.6549 4.4450 14 6 2.8430 -6.9359 3.9354 15 6 2.3454 -8.0123 4.8653 16 1 1.7972 -7.7449 5.7567 17 6 2.5907 -9.3384 4.5789 18 7 3.2587 -9.6641 3.4937 19 14 1.9745 -10.6727 5.7319 20 1 1.2574 -10.0485 6.8728 21 1 1.0493 -11.5729 4.9979 22 1 3.1275 -11.4572 6.2423 23 6 1.7430 -4.0731 2.7110 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 3.8680 -1.8026 3.0911 34 1 2.4103 -1.3144 3.9970 35 1 4.1770 -3.2831 4.8636 36 1 2.4449 -3.2392 5.3239 37 1 2.4033 -7.0775 2.9481 38 1 3.9289 -6.9929 3.8611 39 1 3.4309 -10.5971 3.2920 40 1 0.7852 -4.1417 3.2266 41 1 1.7224 -4.6578 1.7913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238103811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:37 Heat of formation + Delta-G solvation = -150.149263 kcal Electronic energy + Delta-G solvation = -21327.479032 eV Core-core repulsion = 18013.808340 eV Total energy + Delta-G solvation = -3313.670692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92611 -40.07396 -38.19637 -37.18335 -35.11454 -34.81756 -32.05554 -30.02797 -29.01015 -28.37388 -28.27875 -25.30744 -24.40171 -22.65931 -22.02248 -20.45324 -19.14889 -18.54466 -18.21337 -17.58484 -17.22899 -16.51264 -16.20602 -16.02175 -15.55414 -15.25132 -15.09856 -14.73413 -14.35913 -14.08507 -14.03652 -13.39530 -13.33769 -13.15405 -13.04746 -12.90121 -12.87054 -12.86611 -12.62482 -12.52169 -12.42905 -12.28049 -12.14055 -11.62313 -11.41375 -11.29112 -11.16545 -10.92486 -10.30708 -9.86014 -8.32966 -6.45400 0.93441 1.41172 1.42228 1.56899 1.65838 2.33928 2.75816 3.01426 3.14715 3.53129 3.56313 3.75429 3.79541 3.94636 3.98917 4.20820 4.28619 4.48461 4.55591 4.61101 4.64253 4.70526 4.72611 4.76089 4.83488 4.85962 4.88597 4.97495 5.03340 5.13216 5.16665 5.17378 5.28024 5.34010 5.42551 5.55532 5.93977 6.33794 6.48139 6.77959 7.17303 7.26347 8.79391 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.039136 B = 0.003313 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.273218 B = 8449.829911 C = 8766.731552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.359 6.359 6 C 0.663 3.337 7 O -0.596 6.596 8 N -0.604 5.604 9 C 0.112 3.888 10 C -0.117 4.117 11 C 0.068 3.932 12 H 0.070 0.930 13 O -0.385 6.385 14 C 0.208 3.792 15 C -0.548 4.548 16 H 0.065 0.935 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.271 1.271 23 C 0.112 3.888 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.090 0.910 37 H -0.015 1.015 38 H -0.007 1.007 39 H 0.271 0.729 40 H 0.073 0.927 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 22.837 -4.647 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.085 3.915 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.274 6.274 6 C 0.419 3.581 7 O -0.487 6.487 8 N -0.346 5.346 9 C -0.010 4.010 10 C -0.155 4.155 11 C 0.008 3.992 12 H 0.088 0.912 13 O -0.304 6.304 14 C 0.133 3.867 15 C -0.585 4.585 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.196 1.196 23 C -0.010 4.010 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.003 0.997 38 H 0.011 0.989 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.662 22.682 -4.937 23.223 hybrid contribution -0.190 -1.236 -0.207 1.268 sum -0.853 21.446 -5.144 22.071 Atomic orbital electron populations 1.22477 0.94058 1.03395 1.03804 1.22507 0.94664 0.92966 0.81329 1.21870 1.02498 0.90004 1.04520 1.22486 1.01684 1.01983 0.97685 1.86316 1.71461 1.22084 1.47510 1.17612 0.78583 0.81020 0.80884 1.90899 1.42664 1.71225 1.43935 1.47063 1.53328 1.12377 1.21860 1.22222 0.95234 0.96928 0.86585 1.22755 1.04969 0.90180 0.97597 1.23257 0.94686 0.88609 0.92652 0.91180 1.87870 1.79040 1.14811 1.48637 1.19944 0.93387 0.79710 0.93683 1.21418 1.36757 0.91146 1.09206 0.91671 1.25960 0.94879 1.01035 0.97386 1.70078 1.40850 1.19213 1.26832 0.85133 0.78304 0.77609 0.78354 1.18623 1.19967 1.19626 1.22563 0.99694 0.79388 0.99393 0.91733 0.88741 0.92631 0.91068 0.87743 0.90937 0.92687 0.88706 0.91892 0.89251 0.88837 0.87237 0.89091 0.99676 0.98921 0.92053 0.90838 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.68 8.37 71.98 0.60 -3.08 16 2 C 0.12 2.48 1.13 -10.80 -0.01 2.47 16 3 C -0.13 -1.64 8.85 71.98 0.64 -1.00 16 4 C -0.18 -3.80 8.37 71.98 0.60 -3.20 16 5 O -0.36 -9.34 9.49 -55.49 -0.53 -9.87 16 6 C 0.66 21.24 7.93 129.79 1.03 22.27 16 7 O -0.60 -22.38 12.14 19.80 0.24 -22.14 16 8 N -0.60 -18.41 3.32 -941.66 -3.13 -21.54 16 9 C 0.11 2.51 6.89 86.73 0.60 3.10 16 10 C -0.12 -2.96 6.68 31.78 0.21 -2.75 16 11 C 0.07 2.42 3.56 32.06 0.11 2.53 16 12 H 0.07 2.54 7.83 -2.39 -0.02 2.52 16 13 O -0.39 -17.98 10.14 -148.98 -1.51 -19.49 16 14 C 0.21 11.43 5.53 71.24 0.39 11.82 16 15 C -0.55 -32.13 9.43 25.60 0.24 -31.89 16 16 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 17 C 0.01 0.34 5.46 84.65 0.46 0.80 16 18 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 19 Si 0.98 44.08 29.54 68.60 2.03 46.10 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.11 3.99 6.65 86.93 0.58 4.56 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.54 5.88 -2.39 -0.01 1.52 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 1.56 5.88 -2.39 -0.01 1.54 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H -0.01 -0.40 8.12 -2.39 -0.02 -0.42 16 39 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 Total: -1.00 -70.43 335.79 3.83 -66.59 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.99 Total: 10.17 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.46 Total: 5.64 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -2.85 Total: -77.01 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -1.80 Total: -51.50 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.43 3.83 -66.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238103811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.556 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds