Wall clock time and date at job start Mon Mar 30 2020 01:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47019 * 2 1 4 4 C 1.52997 * 109.46961 * 64.99903 * 3 2 1 5 5 O 1.42898 * 109.47354 * 60.00360 * 4 3 2 6 6 C 1.42900 * 114.00041 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.46741 * 305.00090 * 3 2 1 8 8 C 1.46904 * 110.99787 * 299.99802 * 7 3 2 9 9 C 1.53003 * 109.46734 * 185.04492 * 8 7 3 10 10 C 1.50701 * 115.54699 * 301.12308 * 9 8 7 11 11 H 1.08004 * 119.99868 * 95.22828 * 10 9 8 12 12 C 1.37872 * 120.00391 * 275.22428 * 10 9 8 13 13 N 1.31508 * 120.00050 * 5.67176 * 12 10 9 14 14 Si 1.86806 * 120.00047 * 185.66484 * 12 10 9 15 15 H 1.48498 * 109.46785 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.46941 * 300.00164 * 14 12 10 17 17 H 1.48494 * 109.47260 * 60.00066 * 14 12 10 18 18 C 1.52992 * 117.50129 * 86.79837 * 9 8 7 19 19 C 1.52998 * 117.49655 * 155.46035 * 9 8 7 20 20 C 1.50697 * 109.46913 * 184.99879 * 3 2 1 21 21 O 1.20823 * 120.00092 * 334.99860 * 20 3 2 22 22 O 1.34234 * 119.99494 * 154.99572 * 20 3 2 23 23 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47168 * 299.99986 * 1 2 3 25 25 H 1.08998 * 109.46753 * 60.00070 * 1 2 3 26 26 H 1.09003 * 109.47168 * 240.00014 * 2 1 3 27 27 H 1.08996 * 109.47483 * 119.99821 * 2 1 3 28 28 H 1.09002 * 109.46665 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.47502 * 299.99956 * 4 3 2 30 30 H 1.08999 * 109.46998 * 299.99467 * 6 5 4 31 31 H 1.08995 * 109.47402 * 59.99461 * 6 5 4 32 32 H 1.08998 * 109.46865 * 179.97438 * 6 5 4 33 33 H 1.00901 * 110.99574 * 176.05117 * 7 3 2 34 34 H 1.09001 * 109.46959 * 65.04423 * 8 7 3 35 35 H 1.09003 * 109.47070 * 305.04052 * 8 7 3 36 36 H 0.97003 * 120.00229 * 355.10399 * 13 12 10 37 37 H 1.09005 * 117.50192 * 215.00363 * 18 9 8 38 38 H 1.09001 * 117.49974 * 0.02562 * 18 9 8 39 39 H 1.08994 * 117.50053 * 359.97206 * 19 9 8 40 40 H 1.09008 * 117.49720 * 144.97185 * 19 9 8 41 41 H 0.96705 * 116.99627 * 180.02562 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1266 1.3073 5 8 2.2051 1.4200 2.4110 6 6 1.8859 1.9795 3.6865 7 7 1.4542 2.1690 -1.1346 8 6 1.8225 1.5391 -2.4096 9 6 1.3016 2.3914 -3.5686 10 6 -0.1890 2.6121 -3.5943 11 1 -0.6102 3.5053 -3.1571 12 6 -1.0149 1.6739 -4.1760 13 7 -0.5160 0.5365 -4.6083 14 14 -2.8427 2.0182 -4.3499 15 1 -3.5046 0.8600 -5.0023 16 1 -3.4358 2.2341 -3.0056 17 1 -3.0407 3.2338 -5.1793 18 6 2.1933 3.5319 -4.0633 19 6 2.0211 2.2706 -4.9134 20 6 3.5419 1.4444 -0.1238 21 8 4.1792 0.4843 0.2396 22 8 4.1716 2.5126 -0.6379 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.9982 3.1544 1.3071 29 1 0.5489 2.1253 1.3969 30 1 2.2541 3.0043 3.7362 31 1 0.8048 1.9748 3.8252 32 1 2.3552 1.3861 4.4712 33 1 1.7246 3.1410 -1.1200 34 1 1.3818 0.5437 -2.4638 35 1 2.9077 1.4602 -2.4758 36 1 0.4420 0.3863 -4.5832 37 1 1.7019 4.4421 -4.4074 38 1 3.1513 3.6749 -3.5635 39 1 2.8659 1.5844 -4.9723 40 1 1.4163 2.3505 -5.8168 41 1 5.1358 2.4671 -0.6976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328500092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:01 Heat of formation + Delta-G solvation = -114.528025 kcal Electronic energy + Delta-G solvation = -22745.279180 eV Core-core repulsion = 19433.153141 eV Total energy + Delta-G solvation = -3312.126039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58443 -38.13769 -37.31754 -36.01995 -35.56033 -31.83867 -31.31354 -29.21030 -26.59852 -24.99051 -24.79566 -23.97154 -22.64076 -21.26690 -19.40583 -19.08270 -17.78879 -17.11801 -16.74965 -16.27986 -15.88551 -15.60927 -15.00164 -14.24137 -14.10022 -13.68294 -13.66253 -13.19951 -13.09974 -12.58827 -12.34369 -12.19983 -11.91471 -11.65624 -11.46577 -11.43154 -11.26888 -10.81847 -10.75459 -10.59034 -10.44410 -10.41363 -10.18734 -10.06317 -9.65665 -9.51122 -8.50116 -8.41467 -8.26209 -7.90371 -6.24776 -3.96156 2.41881 3.13181 3.48421 3.49156 3.54138 3.67851 4.57032 4.71955 4.83720 4.87692 5.16601 5.22977 5.27710 5.34694 5.42282 5.54268 5.55411 5.62402 5.82220 5.91128 5.95384 6.12595 6.22398 6.27431 6.35453 6.43856 6.55533 6.57743 6.61489 6.66329 6.87874 7.03609 7.08860 7.19591 7.26831 7.58111 7.85624 8.09247 8.35143 8.52000 8.96800 9.75851 11.14469 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.006701 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.054348 B = 4177.757507 C = 4923.037108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C 0.137 3.863 4 C 0.073 3.927 5 O -0.386 6.386 6 C 0.033 3.967 7 N -0.632 5.632 8 C 0.101 3.899 9 C 0.027 3.973 10 C -0.548 4.548 11 H 0.052 0.948 12 C 0.027 3.973 13 N -0.910 5.910 14 Si 1.064 2.936 15 H -0.285 1.285 16 H -0.288 1.288 17 H -0.291 1.291 18 C -0.199 4.199 19 C -0.180 4.180 20 C 0.455 3.545 21 O -0.512 6.512 22 O -0.518 6.518 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.346 0.654 34 H 0.076 0.924 35 H 0.001 0.999 36 H 0.272 0.728 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 3.676 11.512 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C 0.043 3.957 4 C -0.004 4.004 5 O -0.304 6.304 6 C -0.063 4.063 7 N -0.264 5.264 8 C -0.027 4.027 9 C 0.027 3.973 10 C -0.586 4.586 11 H 0.070 0.930 12 C -0.178 4.178 13 N -0.545 5.545 14 Si 0.893 3.107 15 H -0.211 1.211 16 H -0.214 1.214 17 H -0.218 1.218 18 C -0.236 4.236 19 C -0.218 4.218 20 C 0.294 3.706 21 O -0.398 6.398 22 O -0.329 6.329 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.166 0.834 34 H 0.094 0.906 35 H 0.019 0.981 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.814 2.252 11.168 11.735 hybrid contribution 3.143 1.219 0.414 3.396 sum 5.956 3.471 11.581 13.478 Atomic orbital electron populations 1.21717 0.93537 1.01225 1.03571 1.21396 0.97625 0.91361 1.02805 1.21133 0.82561 0.98686 0.93332 1.22450 0.99367 0.94189 0.84363 1.87923 1.74327 1.54087 1.14036 1.22730 1.00075 0.98345 0.85185 1.60368 1.59663 1.05917 1.00464 1.21734 0.93844 0.99289 0.87826 1.19099 0.94259 0.94519 0.89458 1.21076 0.88409 1.08499 1.40636 0.92951 1.25639 1.05699 0.92764 0.93702 1.70739 1.15686 1.22743 1.45365 0.83613 0.75181 0.75488 0.76407 1.21083 1.21450 1.21784 1.22907 1.00409 0.93645 1.06642 1.22759 1.02100 0.99548 0.97431 1.25208 0.93477 0.79487 0.72414 1.90643 1.68407 1.35408 1.45303 1.84605 1.27324 1.44284 1.76733 0.93290 0.93396 0.89341 0.91709 0.90551 0.92713 0.89940 0.94224 0.93758 0.89667 0.83444 0.90580 0.98081 0.91651 0.90201 0.91655 0.91880 0.89712 0.74093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.42 37.16 0.35 -2.08 16 2 C -0.09 -1.64 3.81 -26.72 -0.10 -1.74 16 3 C 0.14 2.29 0.46 -132.75 -0.06 2.23 16 4 C 0.07 1.05 4.81 37.16 0.18 1.23 16 5 O -0.39 -5.56 9.56 -35.23 -0.34 -5.90 16 6 C 0.03 0.34 11.01 101.05 1.11 1.45 16 7 N -0.63 -11.65 4.83 -101.13 -0.49 -12.14 16 8 C 0.10 2.14 4.57 -3.82 -0.02 2.12 16 9 C 0.03 0.64 1.06 -155.66 -0.17 0.47 16 10 C -0.55 -14.30 8.61 -34.44 -0.30 -14.59 16 11 H 0.05 1.39 7.82 -52.48 -0.41 0.98 16 12 C 0.03 0.72 5.39 -17.82 -0.10 0.63 16 13 N -0.91 -25.98 13.57 55.43 0.75 -25.23 16 14 Si 1.06 24.44 29.91 -169.99 -5.08 19.36 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.20 -4.15 9.94 -26.70 -0.27 -4.42 16 19 C -0.18 -4.07 8.66 -26.69 -0.23 -4.30 16 20 C 0.45 7.82 5.47 36.00 0.20 8.01 16 21 O -0.51 -9.98 16.95 -18.75 -0.32 -10.30 16 22 O -0.52 -7.52 12.28 -39.27 -0.48 -8.00 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 25 H 0.09 1.80 7.17 -51.93 -0.37 1.42 16 26 H 0.06 1.23 6.80 -51.93 -0.35 0.88 16 27 H 0.08 1.32 7.43 -51.93 -0.39 0.93 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.13 6.57 -51.93 -0.34 0.78 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.35 6.19 8.31 -39.29 -0.33 5.86 16 34 H 0.08 1.79 6.23 -51.93 -0.32 1.47 16 35 H 0.00 0.03 6.49 -51.93 -0.34 -0.31 16 36 H 0.27 7.75 6.19 -40.82 -0.25 7.49 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.08 2.05 8.14 -51.92 -0.42 1.63 16 41 H 0.40 4.11 9.10 45.56 0.41 4.52 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -30.62 333.58 -5.96 -36.57 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.63 Total: 11.60 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 0.60 Total: -10.99 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.26 Total: -37.37 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.14 Total: -24.20 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.62 -5.96 -36.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328500092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.955 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds