Wall clock time and date at job start Mon Mar 30 2020 01:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47019 * 2 1 4 4 C 1.52997 * 109.46961 * 64.99903 * 3 2 1 5 5 O 1.42898 * 109.47354 * 60.00360 * 4 3 2 6 6 C 1.42900 * 114.00041 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.46741 * 305.00090 * 3 2 1 8 8 C 1.46904 * 110.99787 * 299.99802 * 7 3 2 9 9 C 1.53003 * 109.46734 * 185.04492 * 8 7 3 10 10 C 1.50701 * 115.54699 * 301.12308 * 9 8 7 11 11 H 1.08004 * 119.99868 * 95.22828 * 10 9 8 12 12 C 1.37872 * 120.00391 * 275.22428 * 10 9 8 13 13 N 1.31508 * 120.00050 * 5.67176 * 12 10 9 14 14 Si 1.86806 * 120.00047 * 185.66484 * 12 10 9 15 15 H 1.48498 * 109.46785 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.46941 * 300.00164 * 14 12 10 17 17 H 1.48494 * 109.47260 * 60.00066 * 14 12 10 18 18 C 1.52992 * 117.50129 * 86.79837 * 9 8 7 19 19 C 1.52998 * 117.49655 * 155.46035 * 9 8 7 20 20 C 1.50697 * 109.46913 * 184.99879 * 3 2 1 21 21 O 1.20823 * 120.00092 * 334.99860 * 20 3 2 22 22 O 1.34234 * 119.99494 * 154.99572 * 20 3 2 23 23 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47168 * 299.99986 * 1 2 3 25 25 H 1.08998 * 109.46753 * 60.00070 * 1 2 3 26 26 H 1.09003 * 109.47168 * 240.00014 * 2 1 3 27 27 H 1.08996 * 109.47483 * 119.99821 * 2 1 3 28 28 H 1.09002 * 109.46665 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.47502 * 299.99956 * 4 3 2 30 30 H 1.08999 * 109.46998 * 299.99467 * 6 5 4 31 31 H 1.08995 * 109.47402 * 59.99461 * 6 5 4 32 32 H 1.08998 * 109.46865 * 179.97438 * 6 5 4 33 33 H 1.00901 * 110.99574 * 176.05117 * 7 3 2 34 34 H 1.09001 * 109.46959 * 65.04423 * 8 7 3 35 35 H 1.09003 * 109.47070 * 305.04052 * 8 7 3 36 36 H 0.97003 * 120.00229 * 355.10399 * 13 12 10 37 37 H 1.09005 * 117.50192 * 215.00363 * 18 9 8 38 38 H 1.09001 * 117.49974 * 0.02562 * 18 9 8 39 39 H 1.08994 * 117.50053 * 359.97206 * 19 9 8 40 40 H 1.09008 * 117.49720 * 144.97185 * 19 9 8 41 41 H 0.96705 * 116.99627 * 180.02562 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1266 1.3073 5 8 2.2051 1.4200 2.4110 6 6 1.8859 1.9795 3.6865 7 7 1.4542 2.1690 -1.1346 8 6 1.8225 1.5391 -2.4096 9 6 1.3016 2.3914 -3.5686 10 6 -0.1890 2.6121 -3.5943 11 1 -0.6102 3.5053 -3.1571 12 6 -1.0149 1.6739 -4.1760 13 7 -0.5160 0.5365 -4.6083 14 14 -2.8427 2.0182 -4.3499 15 1 -3.5046 0.8600 -5.0023 16 1 -3.4358 2.2341 -3.0056 17 1 -3.0407 3.2338 -5.1793 18 6 2.1933 3.5319 -4.0633 19 6 2.0211 2.2706 -4.9134 20 6 3.5419 1.4444 -0.1238 21 8 4.1792 0.4843 0.2396 22 8 4.1716 2.5126 -0.6379 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.9982 3.1544 1.3071 29 1 0.5489 2.1253 1.3969 30 1 2.2541 3.0043 3.7362 31 1 0.8048 1.9748 3.8252 32 1 2.3552 1.3861 4.4712 33 1 1.7246 3.1410 -1.1200 34 1 1.3818 0.5437 -2.4638 35 1 2.9077 1.4602 -2.4758 36 1 0.4420 0.3863 -4.5832 37 1 1.7019 4.4421 -4.4074 38 1 3.1513 3.6749 -3.5635 39 1 2.8659 1.5844 -4.9723 40 1 1.4163 2.3505 -5.8168 41 1 5.1358 2.4671 -0.6976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328500092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:01 Heat of formation + Delta-G solvation = -135.635145 kcal Electronic energy + Delta-G solvation = -22746.194453 eV Core-core repulsion = 19433.153141 eV Total energy + Delta-G solvation = -3313.041312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91791 -39.40178 -38.84278 -37.28773 -37.01051 -33.83811 -32.81289 -30.48758 -27.66466 -26.86796 -26.11345 -25.48244 -23.98305 -23.02702 -21.24525 -20.45020 -19.10244 -18.70317 -18.24665 -17.37892 -17.20446 -16.84432 -16.35515 -15.69265 -15.54543 -15.39503 -15.06387 -14.74163 -14.58423 -14.23691 -14.00138 -13.40881 -13.39157 -13.06890 -12.76815 -12.71529 -12.55960 -12.52297 -12.42298 -12.18670 -12.02997 -11.90544 -11.78369 -11.53186 -11.30447 -10.66551 -10.39223 -10.33631 -10.16931 -9.43287 -8.36360 -6.07167 1.08241 1.61779 1.68123 1.86043 1.90962 2.43004 2.68788 3.24708 3.39152 3.47886 3.56422 3.72391 4.14685 4.20485 4.31074 4.36593 4.43425 4.44826 4.50233 4.53909 4.54623 4.58383 4.63199 4.81009 4.84214 4.86627 4.90040 5.07627 5.11143 5.20205 5.43014 5.47099 5.52578 5.59467 5.98390 6.10224 6.29217 6.41721 6.47006 6.86800 6.88227 7.70858 9.03627 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.006701 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.054348 B = 4177.757507 C = 4923.037108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C 0.135 3.865 4 C 0.080 3.920 5 O -0.409 6.409 6 C 0.026 3.974 7 N -0.631 5.631 8 C 0.121 3.879 9 C 0.003 3.997 10 C -0.547 4.547 11 H 0.045 0.955 12 C -0.018 4.018 13 N -0.939 5.939 14 Si 1.103 2.897 15 H -0.294 1.294 16 H -0.273 1.273 17 H -0.278 1.278 18 C -0.171 4.171 19 C -0.188 4.188 20 C 0.458 3.542 21 O -0.540 6.540 22 O -0.512 6.512 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.352 0.648 34 H 0.045 0.955 35 H 0.005 0.995 36 H 0.262 0.738 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 5.206 13.007 14.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 C 0.041 3.959 4 C 0.003 3.997 5 O -0.328 6.328 6 C -0.070 4.070 7 N -0.264 5.264 8 C -0.008 4.008 9 C 0.003 3.997 10 C -0.585 4.585 11 H 0.063 0.937 12 C -0.217 4.217 13 N -0.576 5.576 14 Si 0.928 3.072 15 H -0.220 1.220 16 H -0.198 1.198 17 H -0.204 1.204 18 C -0.208 4.208 19 C -0.226 4.226 20 C 0.299 3.701 21 O -0.428 6.428 22 O -0.325 6.325 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.172 0.828 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.030 3.825 12.675 13.582 hybrid contribution 3.155 0.791 -0.017 3.253 sum 6.185 4.616 12.659 14.826 Atomic orbital electron populations 1.21591 0.93215 1.01445 1.02753 1.21315 0.97784 0.92015 1.01635 1.21148 0.82588 0.98142 0.94049 1.22364 0.99704 0.94424 0.83233 1.87891 1.74706 1.54924 1.15293 1.22972 1.01225 0.99219 0.83561 1.60241 1.60117 1.06171 0.99878 1.21322 0.93503 0.97463 0.88467 1.19173 0.93496 0.96655 0.90411 1.21294 0.90130 1.07677 1.39418 0.93668 1.26739 1.09017 0.92491 0.93501 1.70839 1.15087 1.24031 1.47632 0.83091 0.71566 0.75406 0.77162 1.21992 1.19837 1.20400 1.22903 1.00741 0.92528 1.04634 1.22674 1.02204 1.01333 0.96386 1.25153 0.93587 0.79450 0.71899 1.90637 1.68981 1.36475 1.46720 1.84541 1.29189 1.42915 1.75857 0.92686 0.91249 0.92813 0.94173 0.90278 0.91143 0.89307 0.92913 0.92483 0.88433 0.82774 0.93661 0.97671 0.92778 0.90141 0.89005 0.90841 0.92044 0.71730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.42 71.98 0.68 -3.80 16 2 C -0.09 -3.11 3.81 30.60 0.12 -3.00 16 3 C 0.13 4.34 0.46 2.78 0.00 4.34 16 4 C 0.08 2.09 4.81 71.98 0.35 2.44 16 5 O -0.41 -10.89 9.56 -148.98 -1.42 -12.32 16 6 C 0.03 0.46 11.01 113.37 1.25 1.71 16 7 N -0.63 -22.63 4.83 -473.86 -2.29 -24.92 16 8 C 0.12 5.12 4.57 86.30 0.39 5.51 16 9 C 0.00 0.16 1.06 -52.93 -0.06 0.10 16 10 C -0.55 -28.48 8.61 25.60 0.22 -28.26 16 11 H 0.05 2.37 7.82 -2.91 -0.02 2.35 16 12 C -0.02 -0.99 5.39 84.65 0.46 -0.53 16 13 N -0.94 -54.80 13.57 21.44 0.29 -54.51 16 14 Si 1.10 49.23 29.91 68.60 2.05 51.28 16 15 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 18 C -0.17 -6.82 9.94 30.62 0.30 -6.51 16 19 C -0.19 -8.43 8.66 30.62 0.27 -8.17 16 20 C 0.46 15.09 5.47 71.23 0.39 15.48 16 21 O -0.54 -20.58 16.95 21.97 0.37 -20.21 16 22 O -0.51 -13.57 12.28 -51.46 -0.63 -14.20 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 1.99 6.57 -2.39 -0.02 1.98 16 25 H 0.05 2.20 7.17 -2.39 -0.02 2.19 16 26 H 0.04 1.56 6.80 -2.39 -0.02 1.55 16 27 H 0.08 2.70 7.43 -2.39 -0.02 2.68 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 2.20 6.57 -2.38 -0.02 2.18 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.35 11.88 8.31 -89.69 -0.75 11.13 16 34 H 0.04 2.19 6.23 -2.39 -0.01 2.18 16 35 H 0.01 0.22 6.49 -2.39 -0.02 0.20 16 36 H 0.26 15.39 6.19 -92.71 -0.57 14.81 16 37 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 38 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 41 H 0.42 7.47 9.10 -74.05 -0.67 6.79 16 Total: -1.00 -65.75 333.58 2.55 -63.20 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.18 Total: 32.37 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 4.36 Total: -20.69 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.00 Total: -79.43 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -1.68 Total: -46.73 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.28 kcal Total: -65.75 2.55 -63.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328500092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.434 kcal (2) G-P(sol) polarization free energy of solvation -65.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds