Wall clock time and date at job start Mon Mar 30 2020 01:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47317 * 2 1 4 4 C 1.53002 * 109.46923 * 300.00297 * 3 2 1 5 5 O 1.42904 * 109.46706 * 305.31052 * 4 3 2 6 6 C 1.42902 * 113.99886 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.46866 * 60.00064 * 3 2 1 8 8 C 1.46900 * 111.00216 * 56.76169 * 7 3 2 9 9 C 1.53004 * 109.47054 * 173.68968 * 8 7 3 10 10 C 1.50697 * 115.55152 * 39.81222 * 9 8 7 11 11 H 1.08001 * 119.99873 * 268.54151 * 10 9 8 12 12 C 1.37875 * 120.00040 * 88.53725 * 10 9 8 13 13 N 1.31517 * 120.00043 * 178.38890 * 12 10 9 14 14 Si 1.86798 * 120.00076 * 358.38723 * 12 10 9 15 15 H 1.48508 * 109.46995 * 86.98179 * 14 12 10 16 16 H 1.48502 * 109.47115 * 206.97883 * 14 12 10 17 17 H 1.48499 * 109.47407 * 326.98317 * 14 12 10 18 18 C 1.53000 * 117.49567 * 254.10247 * 9 8 7 19 19 C 1.53001 * 60.00112 * 252.51148 * 18 9 8 20 20 C 1.50703 * 109.47053 * 180.02562 * 3 2 1 21 21 O 1.20820 * 120.00358 * 24.99789 * 20 3 2 22 22 O 1.34228 * 119.99284 * 205.00032 * 20 3 2 23 23 H 1.09005 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47569 * 59.99914 * 1 2 3 25 25 H 1.09003 * 109.47406 * 299.99806 * 1 2 3 26 26 H 1.09003 * 109.47820 * 120.00062 * 2 1 3 27 27 H 1.09003 * 109.47406 * 240.00194 * 2 1 3 28 28 H 1.08999 * 109.47268 * 65.30938 * 4 3 2 29 29 H 1.08994 * 109.47037 * 185.31570 * 4 3 2 30 30 H 1.09001 * 109.47424 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.46998 * 300.00091 * 6 5 4 32 32 H 1.08998 * 109.47505 * 59.99293 * 6 5 4 33 33 H 1.00906 * 111.00223 * 292.80666 * 7 3 2 34 34 H 1.09001 * 109.46905 * 293.69000 * 8 7 3 35 35 H 1.08994 * 109.47052 * 53.69050 * 8 7 3 36 36 H 0.96999 * 120.00375 * 180.02562 * 13 12 10 37 37 H 1.08994 * 117.49976 * 0.02562 * 18 9 8 38 38 H 1.09000 * 117.49494 * 145.02368 * 18 9 8 39 39 H 1.09000 * 117.50156 * 252.51634 * 19 18 9 40 40 H 1.09003 * 117.51614 * 107.47916 * 19 18 9 41 41 H 0.96709 * 116.99641 * 180.02562 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2492 5 8 1.9017 1.4219 -2.4127 6 6 1.4717 2.0128 -3.6407 7 7 1.5503 2.1350 1.1994 8 6 1.9570 1.4256 2.4198 9 6 1.5674 2.2545 3.6454 10 6 0.2284 2.9415 3.5665 11 1 0.1599 3.9482 3.1814 12 6 -0.9091 2.2848 3.9858 13 7 -2.0732 2.8956 3.9466 14 14 -0.7969 0.5276 4.6096 15 1 -0.4892 0.5368 6.0624 16 1 -2.0923 -0.1620 4.3823 17 1 0.2800 -0.1888 3.8801 18 6 2.6887 2.9755 4.3961 19 6 2.0209 1.7460 5.0153 20 6 3.5470 1.4425 -0.0006 21 8 4.1509 0.4942 -0.4432 22 8 4.2183 2.4960 0.4906 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 0.4441 2.2469 -1.2029 29 1 1.9689 3.1602 -1.2981 30 1 1.7923 1.3896 -4.4756 31 1 0.3847 2.0931 -3.6442 32 1 1.9097 3.0060 -3.7390 33 1 0.5486 2.2518 1.1659 34 1 1.4567 0.4581 2.4614 35 1 3.0366 1.2762 2.4105 36 1 -2.8734 2.4338 4.2420 37 1 3.7039 2.8596 4.0167 38 1 2.4581 3.9471 4.8330 39 1 1.3509 1.9088 5.8596 40 1 2.5965 0.8208 5.0435 41 1 5.1840 2.4503 0.4684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328500093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:03 Heat of formation + Delta-G solvation = -104.432296 kcal Electronic energy + Delta-G solvation = -22823.063529 eV Core-core repulsion = 19511.375274 eV Total energy + Delta-G solvation = -3311.688255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50147 -38.19963 -37.33941 -35.97032 -35.58341 -32.10133 -31.21458 -29.33625 -26.67282 -25.60718 -25.00843 -23.99496 -22.68986 -21.55345 -19.17223 -18.95968 -17.71580 -16.80078 -16.41402 -16.18115 -15.78344 -15.44741 -15.05582 -14.66019 -14.57656 -14.09775 -13.79345 -13.11874 -13.03774 -12.71650 -12.49521 -12.16105 -12.02270 -11.89438 -11.58433 -11.51568 -11.16898 -11.11200 -10.95029 -10.67414 -10.53885 -10.37683 -10.16243 -10.04712 -9.63841 -9.56163 -8.99994 -8.65595 -8.47670 -7.75194 -6.12656 -4.14176 2.48417 3.25824 3.28407 3.36194 3.39403 3.55529 4.39281 4.63898 4.82818 4.93926 5.12484 5.17445 5.27257 5.29322 5.38193 5.46289 5.54884 5.58783 5.61642 5.76717 5.83134 5.94934 6.07525 6.17290 6.22516 6.29213 6.32291 6.45526 6.54139 6.59416 6.75223 6.78690 6.97327 7.08678 7.18043 7.56825 7.76181 7.98848 8.25237 8.54706 8.95406 9.51006 10.98623 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.007216 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.986371 B = 3879.497158 C = 4471.152853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.128 3.872 4 C 0.073 3.927 5 O -0.386 6.386 6 C 0.033 3.967 7 N -0.644 5.644 8 C 0.094 3.906 9 C 0.010 3.990 10 C -0.476 4.476 11 H 0.083 0.917 12 C 0.076 3.924 13 N -0.897 5.897 14 Si 0.873 3.127 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.260 1.260 18 C -0.171 4.171 19 C -0.210 4.210 20 C 0.501 3.499 21 O -0.519 6.519 22 O -0.493 6.493 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.368 0.632 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -2.747 -10.174 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.179 4.179 3 C 0.034 3.966 4 C -0.004 4.004 5 O -0.304 6.304 6 C -0.064 4.064 7 N -0.282 5.282 8 C -0.035 4.035 9 C 0.009 3.991 10 C -0.514 4.514 11 H 0.101 0.899 12 C -0.126 4.126 13 N -0.535 5.535 14 Si 0.701 3.299 15 H -0.204 1.204 16 H -0.223 1.223 17 H -0.185 1.185 18 C -0.208 4.208 19 C -0.248 4.248 20 C 0.343 3.657 21 O -0.407 6.407 22 O -0.302 6.302 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.193 0.807 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.186 -2.721 -10.229 12.794 hybrid contribution -0.116 -1.529 0.431 1.593 sum 7.070 -4.250 -9.798 12.808 Atomic orbital electron populations 1.21852 0.94583 1.02334 1.02588 1.22016 0.96790 0.95349 1.03712 1.20672 0.87404 0.95016 0.93461 1.22414 1.00089 0.94455 0.83482 1.87912 1.79044 1.49634 1.13779 1.22732 0.98921 0.98311 0.86419 1.60473 1.21284 1.48410 0.98042 1.21691 0.97257 0.94821 0.89688 1.19288 0.95483 0.97416 0.86914 1.20266 0.87155 1.01821 1.42175 0.89942 1.24980 0.95249 0.97431 0.94929 1.69892 0.98673 1.37291 1.47604 0.86997 0.76894 0.85873 0.80089 1.20419 1.22343 1.18494 1.22778 0.96376 0.95792 1.05867 1.23005 1.04924 0.97099 0.99726 1.23211 0.91111 0.79037 0.72351 1.90663 1.70211 1.35962 1.43859 1.84747 1.25186 1.44365 1.75881 0.92253 0.92250 0.91594 0.91418 0.89818 0.90979 0.91491 0.89710 0.93874 0.94065 0.80718 0.95007 0.93527 0.92646 0.91076 0.89725 0.89469 0.91340 0.74638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.23 37.15 0.34 -2.02 16 2 C -0.14 -2.26 3.84 -26.73 -0.10 -2.36 16 3 C 0.13 2.11 0.52 -132.75 -0.07 2.04 16 4 C 0.07 1.05 4.52 37.16 0.17 1.22 16 5 O -0.39 -5.48 9.57 -35.23 -0.34 -5.82 16 6 C 0.03 0.34 11.01 101.05 1.11 1.45 16 7 N -0.64 -12.01 5.44 -101.14 -0.55 -12.56 16 8 C 0.09 1.90 4.77 -3.82 -0.02 1.88 16 9 C 0.01 0.23 1.24 -155.66 -0.19 0.03 16 10 C -0.48 -12.34 8.10 -34.44 -0.28 -12.62 16 11 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 12 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -25.76 13.96 55.43 0.77 -24.98 16 14 Si 0.87 20.84 24.98 -169.99 -4.25 16.59 16 15 H -0.28 -6.66 7.03 56.52 0.40 -6.26 16 16 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.26 -5.92 5.52 56.52 0.31 -5.60 16 18 C -0.17 -3.48 9.88 -26.73 -0.26 -3.75 16 19 C -0.21 -4.44 7.61 -26.73 -0.20 -4.64 16 20 C 0.50 8.50 5.61 36.01 0.20 8.71 16 21 O -0.52 -9.72 16.85 -18.75 -0.32 -10.04 16 22 O -0.49 -7.37 12.81 -39.25 -0.50 -7.87 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 25 H 0.07 1.13 6.85 -51.93 -0.36 0.78 16 26 H 0.07 1.17 6.50 -51.93 -0.34 0.83 16 27 H 0.08 1.37 7.28 -51.93 -0.38 1.00 16 28 H 0.07 0.97 6.71 -51.93 -0.35 0.62 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.37 7.26 6.19 -39.29 -0.24 7.02 16 34 H 0.03 0.67 4.90 -51.93 -0.25 0.41 16 35 H 0.05 0.91 6.58 -51.93 -0.34 0.57 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 38 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.09 1.94 7.06 -51.93 -0.37 1.58 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.40 4.00 9.10 45.56 0.41 4.42 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -30.48 324.25 -5.28 -35.76 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.58 Total: 12.16 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.60 Total: -8.13 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.22 Total: -37.54 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.16 Total: -23.73 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.25 Total: 16.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.48 -5.28 -35.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328500093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.677 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds