Wall clock time and date at job start Mon Mar 30 2020 01:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47317 * 2 1 4 4 C 1.53002 * 109.46923 * 300.00297 * 3 2 1 5 5 O 1.42904 * 109.46706 * 305.31052 * 4 3 2 6 6 C 1.42902 * 113.99886 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.46866 * 60.00064 * 3 2 1 8 8 C 1.46900 * 111.00216 * 56.76169 * 7 3 2 9 9 C 1.53004 * 109.47054 * 173.68968 * 8 7 3 10 10 C 1.50697 * 115.55152 * 39.81222 * 9 8 7 11 11 H 1.08001 * 119.99873 * 268.54151 * 10 9 8 12 12 C 1.37875 * 120.00040 * 88.53725 * 10 9 8 13 13 N 1.31517 * 120.00043 * 178.38890 * 12 10 9 14 14 Si 1.86798 * 120.00076 * 358.38723 * 12 10 9 15 15 H 1.48508 * 109.46995 * 86.98179 * 14 12 10 16 16 H 1.48502 * 109.47115 * 206.97883 * 14 12 10 17 17 H 1.48499 * 109.47407 * 326.98317 * 14 12 10 18 18 C 1.53000 * 117.49567 * 254.10247 * 9 8 7 19 19 C 1.53001 * 60.00112 * 252.51148 * 18 9 8 20 20 C 1.50703 * 109.47053 * 180.02562 * 3 2 1 21 21 O 1.20820 * 120.00358 * 24.99789 * 20 3 2 22 22 O 1.34228 * 119.99284 * 205.00032 * 20 3 2 23 23 H 1.09005 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47569 * 59.99914 * 1 2 3 25 25 H 1.09003 * 109.47406 * 299.99806 * 1 2 3 26 26 H 1.09003 * 109.47820 * 120.00062 * 2 1 3 27 27 H 1.09003 * 109.47406 * 240.00194 * 2 1 3 28 28 H 1.08999 * 109.47268 * 65.30938 * 4 3 2 29 29 H 1.08994 * 109.47037 * 185.31570 * 4 3 2 30 30 H 1.09001 * 109.47424 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.46998 * 300.00091 * 6 5 4 32 32 H 1.08998 * 109.47505 * 59.99293 * 6 5 4 33 33 H 1.00906 * 111.00223 * 292.80666 * 7 3 2 34 34 H 1.09001 * 109.46905 * 293.69000 * 8 7 3 35 35 H 1.08994 * 109.47052 * 53.69050 * 8 7 3 36 36 H 0.96999 * 120.00375 * 180.02562 * 13 12 10 37 37 H 1.08994 * 117.49976 * 0.02562 * 18 9 8 38 38 H 1.09000 * 117.49494 * 145.02368 * 18 9 8 39 39 H 1.09000 * 117.50156 * 252.51634 * 19 18 9 40 40 H 1.09003 * 117.51614 * 107.47916 * 19 18 9 41 41 H 0.96709 * 116.99641 * 180.02562 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2492 5 8 1.9017 1.4219 -2.4127 6 6 1.4717 2.0128 -3.6407 7 7 1.5503 2.1350 1.1994 8 6 1.9570 1.4256 2.4198 9 6 1.5674 2.2545 3.6454 10 6 0.2284 2.9415 3.5665 11 1 0.1599 3.9482 3.1814 12 6 -0.9091 2.2848 3.9858 13 7 -2.0732 2.8956 3.9466 14 14 -0.7969 0.5276 4.6096 15 1 -0.4892 0.5368 6.0624 16 1 -2.0923 -0.1620 4.3823 17 1 0.2800 -0.1888 3.8801 18 6 2.6887 2.9755 4.3961 19 6 2.0209 1.7460 5.0153 20 6 3.5470 1.4425 -0.0006 21 8 4.1509 0.4942 -0.4432 22 8 4.2183 2.4960 0.4906 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 0.4441 2.2469 -1.2029 29 1 1.9689 3.1602 -1.2981 30 1 1.7923 1.3896 -4.4756 31 1 0.3847 2.0931 -3.6442 32 1 1.9097 3.0060 -3.7390 33 1 0.5486 2.2518 1.1659 34 1 1.4567 0.4581 2.4614 35 1 3.0366 1.2762 2.4105 36 1 -2.8734 2.4338 4.2420 37 1 3.7039 2.8596 4.0167 38 1 2.4581 3.9471 4.8330 39 1 1.3509 1.9088 5.8596 40 1 2.5965 0.8208 5.0435 41 1 5.1840 2.4503 0.4684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328500093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:03 Heat of formation + Delta-G solvation = -126.829746 kcal Electronic energy + Delta-G solvation = -22824.034755 eV Core-core repulsion = 19511.375274 eV Total energy + Delta-G solvation = -3312.659482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79694 -39.46512 -38.78719 -37.25578 -36.93809 -34.15739 -32.59269 -30.55654 -27.95442 -27.27099 -26.29252 -25.40963 -23.94453 -23.22638 -20.84139 -20.38169 -19.00527 -18.30469 -17.78606 -17.45447 -17.14131 -16.83279 -16.57400 -16.10377 -15.86187 -15.37643 -15.26549 -14.72560 -14.44818 -14.38412 -13.93670 -13.62506 -13.33708 -13.13091 -12.99102 -12.83073 -12.62168 -12.44584 -12.42958 -12.09688 -11.98310 -11.93945 -11.82467 -11.47094 -11.36148 -10.85893 -10.66551 -10.60531 -10.23538 -9.26022 -8.21228 -6.24938 1.17998 1.35973 1.41482 1.49899 2.10202 2.40283 2.43493 3.12726 3.20882 3.45350 3.70735 3.74695 4.14795 4.20119 4.25587 4.33248 4.39916 4.43723 4.47263 4.54628 4.57228 4.59131 4.69780 4.72117 4.85441 4.86025 4.89563 4.99521 5.07429 5.13781 5.29737 5.30303 5.53063 5.58789 5.80288 6.07615 6.10848 6.39621 6.51295 6.84819 7.08259 7.42794 8.93432 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.007216 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.986371 B = 3879.497158 C = 4471.152853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.124 3.876 4 C 0.078 3.922 5 O -0.404 6.404 6 C 0.025 3.975 7 N -0.648 5.648 8 C 0.105 3.895 9 C -0.013 4.013 10 C -0.463 4.463 11 H 0.042 0.958 12 C 0.032 3.968 13 N -0.943 5.943 14 Si 0.923 3.077 15 H -0.277 1.277 16 H -0.301 1.301 17 H -0.240 1.240 18 C -0.157 4.157 19 C -0.206 4.206 20 C 0.504 3.496 21 O -0.540 6.540 22 O -0.494 6.494 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.360 0.640 34 H 0.025 0.975 35 H 0.057 0.943 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 -3.765 -10.831 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C 0.031 3.969 4 C 0.001 3.999 5 O -0.323 6.323 6 C -0.071 4.071 7 N -0.284 5.284 8 C -0.024 4.024 9 C -0.014 4.014 10 C -0.501 4.501 11 H 0.060 0.940 12 C -0.166 4.166 13 N -0.583 5.583 14 Si 0.749 3.251 15 H -0.203 1.203 16 H -0.229 1.229 17 H -0.163 1.163 18 C -0.194 4.194 19 C -0.244 4.244 20 C 0.346 3.654 21 O -0.429 6.429 22 O -0.306 6.306 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.183 0.817 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 8.679 -3.726 -10.893 14.418 hybrid contribution -0.509 -1.089 0.575 1.332 sum 8.170 -4.814 -10.318 14.014 Atomic orbital electron populations 1.21813 0.93906 1.03052 1.02101 1.21941 0.97286 0.94983 1.03014 1.20762 0.87503 0.95247 0.93398 1.22319 1.00373 0.94147 0.83108 1.87882 1.79497 1.50252 1.14638 1.22972 0.99833 0.99040 0.85214 1.60403 1.20636 1.48810 0.98544 1.21515 0.97686 0.93960 0.89203 1.19283 0.94473 0.99001 0.88683 1.20274 0.89141 1.00186 1.40532 0.93954 1.25579 0.94825 1.00772 0.95428 1.70018 0.99480 1.39004 1.49769 0.86180 0.77160 0.82024 0.79688 1.20250 1.22896 1.16329 1.22807 0.96986 0.95196 1.04454 1.23022 1.04765 0.98517 0.98060 1.23193 0.91219 0.78980 0.71972 1.90656 1.70609 1.36758 1.44919 1.84694 1.27187 1.43461 1.75211 0.90968 0.90886 0.93844 0.92561 0.89895 0.90297 0.91321 0.88153 0.92731 0.93164 0.81665 0.95729 0.92424 0.92812 0.88403 0.90581 0.90933 0.88855 0.72144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 9.23 71.98 0.66 -3.73 16 2 C -0.13 -4.13 3.84 30.59 0.12 -4.01 16 3 C 0.12 3.92 0.52 2.79 0.00 3.92 16 4 C 0.08 2.13 4.52 71.98 0.33 2.46 16 5 O -0.40 -10.75 9.57 -148.98 -1.43 -12.17 16 6 C 0.03 0.46 11.01 113.37 1.25 1.71 16 7 N -0.65 -23.50 5.44 -473.89 -2.58 -26.08 16 8 C 0.11 4.05 4.77 86.30 0.41 4.47 16 9 C -0.01 -0.57 1.24 -52.93 -0.07 -0.64 16 10 C -0.46 -24.26 8.10 25.60 0.21 -24.05 16 11 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 12 C 0.03 1.72 5.47 84.65 0.46 2.18 16 13 N -0.94 -55.45 13.96 21.45 0.30 -55.16 16 14 Si 0.92 42.61 24.98 68.60 1.71 44.32 16 15 H -0.28 -12.64 7.03 99.48 0.70 -11.94 16 16 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 17 H -0.24 -10.19 5.52 99.48 0.55 -9.65 16 18 C -0.16 -6.06 9.88 30.59 0.30 -5.76 16 19 C -0.21 -8.21 7.61 30.60 0.23 -7.98 16 20 C 0.50 16.14 5.61 71.24 0.40 16.54 16 21 O -0.54 -19.25 16.85 21.98 0.37 -18.88 16 22 O -0.49 -13.59 12.81 -51.40 -0.66 -14.25 16 23 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.07 1.88 6.55 -2.39 -0.02 1.87 16 25 H 0.04 1.46 6.85 -2.39 -0.02 1.44 16 26 H 0.06 1.86 6.50 -2.39 -0.02 1.84 16 27 H 0.08 2.60 7.28 -2.39 -0.02 2.58 16 28 H 0.08 2.03 6.71 -2.39 -0.02 2.01 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.36 14.19 6.19 -89.69 -0.56 13.63 16 34 H 0.02 0.98 4.90 -2.39 -0.01 0.97 16 35 H 0.06 2.08 6.58 -2.39 -0.02 2.07 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.10 3.26 8.08 -2.39 -0.02 3.24 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.07 3.11 7.06 -2.39 -0.02 3.09 16 40 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.42 7.29 9.10 -74.05 -0.67 6.62 16 Total: -1.00 -64.86 324.25 1.68 -63.18 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.35 Total: 33.93 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.31 Total: -14.89 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -2.28 Total: -81.23 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.71 Total: -45.30 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.71 Total: 44.32 kcal Total: -64.86 1.68 -63.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328500093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.654 kcal (2) G-P(sol) polarization free energy of solvation -64.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds