Wall clock time and date at job start Mon Mar 30 2020 02:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46874 * 2 1 4 4 O 1.42897 * 109.47413 * 120.00185 * 2 1 3 5 5 C 1.42901 * 113.99910 * 89.99695 * 4 2 1 6 6 C 1.53001 * 109.46905 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46927 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47160 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99855 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00197 * 180.02562 * 8 7 6 11 11 C 1.47581 * 134.49354 * 180.02562 * 10 8 7 12 12 C 1.53945 * 86.11895 * 155.35947 * 11 10 8 13 13 O 1.42904 * 113.73986 * 269.15696 * 12 11 10 14 14 C 1.50694 * 113.74220 * 137.95139 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47582 * 134.48982 * 359.97438 * 10 8 7 23 23 H 1.09004 * 109.47124 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46780 * 299.99615 * 1 2 3 25 25 H 1.09001 * 109.47036 * 59.99821 * 1 2 3 26 26 H 1.08995 * 109.47117 * 240.00629 * 2 1 3 27 27 H 1.09003 * 109.46862 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47323 * 300.00315 * 3 2 1 29 29 H 1.09001 * 109.47103 * 60.00582 * 3 2 1 30 30 H 1.09008 * 109.46663 * 60.00555 * 5 4 2 31 31 H 1.09001 * 109.47394 * 300.00224 * 5 4 2 32 32 H 1.09008 * 109.46834 * 60.00871 * 6 5 4 33 33 H 1.09001 * 109.47451 * 300.00401 * 6 5 4 34 34 H 1.08994 * 109.46740 * 60.00432 * 7 6 5 35 35 H 1.09001 * 109.47279 * 300.00380 * 7 6 5 36 36 H 1.09001 * 113.77016 * 41.05438 * 11 10 8 37 37 H 1.09005 * 113.86980 * 269.67513 * 11 10 8 38 38 H 0.96699 * 113.99284 * 178.07513 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09002 * 113.76615 * 90.34214 * 22 10 8 41 41 H 1.08991 * 113.77327 * 318.94082 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 2.7092 -2.6925 2.2940 7 6 2.9172 -4.1962 2.1030 8 6 3.4181 -4.8014 3.3891 9 8 3.5911 -4.0992 4.3627 10 7 3.6737 -6.1229 3.4573 11 6 4.1581 -7.0293 4.5165 12 6 3.4411 -8.1492 3.7408 13 8 2.0887 -8.3591 4.1522 14 6 4.2331 -9.4281 3.6509 15 1 5.2089 -9.4924 4.1093 16 6 3.7120 -10.5162 2.9834 17 7 2.5235 -10.4382 2.4256 18 14 4.6941 -12.1013 2.8714 19 1 5.5418 -12.0732 1.6524 20 1 5.5577 -12.2344 4.0720 21 1 3.7633 -13.2562 2.8005 22 6 3.5806 -7.2450 2.5032 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.9321 -2.2466 0.1985 31 1 1.2538 -2.5434 0.7124 32 1 1.9776 -2.5241 3.0843 33 1 3.6556 -2.2272 2.5698 34 1 3.6489 -4.3643 1.3129 35 1 1.9711 -4.6618 1.8271 36 1 3.7272 -6.8288 5.4974 37 1 5.2425 -7.1376 4.5424 38 1 1.6256 -9.0417 3.6476 39 1 2.1571 -11.2036 1.9557 40 1 4.4952 -7.4157 1.9353 41 1 2.6888 -7.2166 1.8772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332028564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:54 Heat of formation + Delta-G solvation = -116.991239 kcal Electronic energy + Delta-G solvation = -20773.509655 eV Core-core repulsion = 17461.276803 eV Total energy + Delta-G solvation = -3312.232852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.53605 -38.56939 -37.42247 -34.12679 -33.92629 -32.21572 -32.11223 -28.96448 -27.50320 -26.64664 -25.25861 -24.88117 -21.74398 -21.41703 -19.90390 -18.23802 -17.45619 -16.94246 -16.23674 -16.08682 -15.39152 -15.10403 -14.99613 -14.68050 -14.16715 -13.99595 -13.30174 -13.08952 -13.02543 -12.58796 -12.49387 -12.31857 -12.22996 -11.90807 -11.69953 -11.58728 -11.55768 -11.27065 -11.07226 -11.01281 -10.82001 -10.75182 -10.53490 -10.29864 -9.65758 -9.62141 -9.18808 -8.78042 -8.41689 -7.82716 -6.41076 -4.51117 3.12980 3.21350 3.22840 3.25252 3.34402 3.75591 4.17296 4.63972 4.78893 4.82060 4.91650 4.96852 5.02098 5.19426 5.26838 5.34269 5.45693 5.47752 5.55577 5.59727 5.61902 5.63898 5.78001 5.93480 5.96801 5.97542 6.18515 6.21704 6.37218 6.38888 6.50998 6.63583 6.68615 7.09304 7.16490 7.61735 7.81184 8.51038 8.52312 8.78453 9.20127 9.44934 10.65535 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035305 B = 0.003078 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.898615 B = 9093.953177 C = 9422.842843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.382 6.382 5 C 0.063 3.937 6 C -0.100 4.100 7 C -0.131 4.131 8 C 0.528 3.472 9 O -0.565 6.565 10 N -0.633 5.633 11 C 0.111 3.889 12 C 0.238 3.762 13 O -0.573 6.573 14 C -0.536 4.536 15 H 0.071 0.929 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.278 1.278 20 H -0.271 1.271 21 H -0.284 1.284 22 C 0.076 3.924 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.081 0.919 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 13.329 -8.298 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.302 6.302 5 C -0.013 4.013 6 C -0.138 4.138 7 C -0.171 4.171 8 C 0.317 3.683 9 O -0.446 6.446 10 N -0.367 5.367 11 C -0.011 4.011 12 C 0.196 3.804 13 O -0.385 6.385 14 C -0.574 4.574 15 H 0.089 0.911 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.195 1.195 21 H -0.209 1.209 22 C -0.046 4.046 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.598 14.344 -7.314 16.180 hybrid contribution 0.227 -1.496 -0.997 1.812 sum -1.371 12.849 -8.311 15.363 Atomic orbital electron populations 1.22308 0.96105 1.02460 1.02453 1.22065 0.93624 0.93800 0.88363 1.21861 1.01807 0.94637 1.02382 1.87937 1.86519 1.20325 1.35391 1.22571 0.99313 0.81325 0.98135 1.21199 1.03236 0.92897 0.96489 1.21435 1.03089 0.95789 0.96744 1.20103 0.77983 0.80445 0.89731 1.90640 1.55271 1.60042 1.38601 1.50183 1.63802 1.05298 1.17397 1.23441 0.98660 0.86054 0.92970 1.19841 0.82079 0.90863 0.87580 1.86063 1.25291 1.63199 1.63977 1.21523 1.03773 0.96723 1.35388 0.91061 1.25075 0.95073 0.99264 0.93675 1.69320 1.16692 1.32046 1.35886 0.86325 0.79678 0.81747 0.78730 1.20334 1.19544 1.20906 1.24306 1.00658 0.83123 0.96554 0.92391 0.91746 0.91817 0.92350 0.92014 0.91425 0.91779 0.93376 0.93312 0.90422 0.90537 0.89304 0.89089 0.91211 0.89735 0.75221 0.91663 0.90044 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.53 37.16 0.35 -1.15 16 2 C 0.08 0.76 3.34 -26.73 -0.09 0.67 16 3 C -0.15 -1.22 9.56 37.16 0.36 -0.86 16 4 O -0.38 -4.87 9.99 -35.23 -0.35 -5.22 16 5 C 0.06 0.75 5.75 37.16 0.21 0.96 16 6 C -0.10 -1.44 4.87 -26.73 -0.13 -1.57 16 7 C -0.13 -1.97 5.45 -27.88 -0.15 -2.12 16 8 C 0.53 10.64 8.06 -10.99 -0.09 10.55 16 9 O -0.57 -13.10 16.71 5.55 0.09 -13.01 16 10 N -0.63 -13.31 3.61 -178.32 -0.64 -13.96 16 11 C 0.11 2.43 8.23 -2.97 -0.02 2.40 16 12 C 0.24 5.65 1.44 -90.86 -0.13 5.52 16 13 O -0.57 -14.64 13.48 -35.23 -0.48 -15.12 16 14 C -0.54 -13.28 8.62 -34.44 -0.30 -13.58 16 15 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 17 N -0.90 -22.40 11.09 55.43 0.61 -21.79 16 18 Si 0.91 19.22 29.54 -169.99 -5.02 14.20 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 C 0.08 1.60 8.00 -2.99 -0.02 1.58 16 23 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.50 8.09 -51.92 -0.42 0.08 16 31 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 32 H 0.08 1.23 8.10 -51.92 -0.42 0.81 16 33 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 38 H 0.39 10.07 6.46 45.56 0.29 10.36 16 39 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 40 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -28.57 343.83 -7.09 -35.66 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.38 Total: 9.97 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.11 Total: 4.07 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.03 Total: -35.75 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.73 Total: -33.35 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.57 -7.09 -35.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332028564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.329 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds