Wall clock time and date at job start Mon Mar 30 2020 02:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46874 * 2 1 4 4 O 1.42897 * 109.47413 * 120.00185 * 2 1 3 5 5 C 1.42901 * 113.99910 * 89.99695 * 4 2 1 6 6 C 1.53001 * 109.46905 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46927 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47160 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99855 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00197 * 180.02562 * 8 7 6 11 11 C 1.47581 * 134.49354 * 180.02562 * 10 8 7 12 12 C 1.53945 * 86.11895 * 155.35947 * 11 10 8 13 13 O 1.42904 * 113.73986 * 269.15696 * 12 11 10 14 14 C 1.50694 * 113.74220 * 137.95139 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47582 * 134.48982 * 359.97438 * 10 8 7 23 23 H 1.09004 * 109.47124 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46780 * 299.99615 * 1 2 3 25 25 H 1.09001 * 109.47036 * 59.99821 * 1 2 3 26 26 H 1.08995 * 109.47117 * 240.00629 * 2 1 3 27 27 H 1.09003 * 109.46862 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47323 * 300.00315 * 3 2 1 29 29 H 1.09001 * 109.47103 * 60.00582 * 3 2 1 30 30 H 1.09008 * 109.46663 * 60.00555 * 5 4 2 31 31 H 1.09001 * 109.47394 * 300.00224 * 5 4 2 32 32 H 1.09008 * 109.46834 * 60.00871 * 6 5 4 33 33 H 1.09001 * 109.47451 * 300.00401 * 6 5 4 34 34 H 1.08994 * 109.46740 * 60.00432 * 7 6 5 35 35 H 1.09001 * 109.47279 * 300.00380 * 7 6 5 36 36 H 1.09001 * 113.77016 * 41.05438 * 11 10 8 37 37 H 1.09005 * 113.86980 * 269.67513 * 11 10 8 38 38 H 0.96699 * 113.99284 * 178.07513 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09002 * 113.76615 * 90.34214 * 22 10 8 41 41 H 1.08991 * 113.77327 * 318.94082 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 2.7092 -2.6925 2.2940 7 6 2.9172 -4.1962 2.1030 8 6 3.4181 -4.8014 3.3891 9 8 3.5911 -4.0992 4.3627 10 7 3.6737 -6.1229 3.4573 11 6 4.1581 -7.0293 4.5165 12 6 3.4411 -8.1492 3.7408 13 8 2.0887 -8.3591 4.1522 14 6 4.2331 -9.4281 3.6509 15 1 5.2089 -9.4924 4.1093 16 6 3.7120 -10.5162 2.9834 17 7 2.5235 -10.4382 2.4256 18 14 4.6941 -12.1013 2.8714 19 1 5.5418 -12.0732 1.6524 20 1 5.5577 -12.2344 4.0720 21 1 3.7633 -13.2562 2.8005 22 6 3.5806 -7.2450 2.5032 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.9321 -2.2466 0.1985 31 1 1.2538 -2.5434 0.7124 32 1 1.9776 -2.5241 3.0843 33 1 3.6556 -2.2272 2.5698 34 1 3.6489 -4.3643 1.3129 35 1 1.9711 -4.6618 1.8271 36 1 3.7272 -6.8288 5.4974 37 1 5.2425 -7.1376 4.5424 38 1 1.6256 -9.0417 3.6476 39 1 2.1571 -11.2036 1.9557 40 1 4.4952 -7.4157 1.9353 41 1 2.6888 -7.2166 1.8772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332028564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:53 Heat of formation + Delta-G solvation = -136.218900 kcal Electronic energy + Delta-G solvation = -20774.343429 eV Core-core repulsion = 17461.276803 eV Total energy + Delta-G solvation = -3313.066626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20325 -39.53402 -39.03031 -35.81056 -35.15924 -34.12151 -33.04981 -30.60674 -28.27341 -27.96567 -26.98474 -26.42887 -22.88373 -22.23595 -21.54197 -19.89520 -19.23722 -18.08916 -17.66166 -17.24770 -17.12470 -16.53032 -16.27322 -15.89100 -15.73753 -15.30738 -14.67004 -14.43876 -14.26205 -13.80406 -13.76055 -13.61809 -13.39098 -13.25401 -12.99711 -12.84560 -12.79760 -12.71112 -12.41796 -12.25824 -12.20793 -12.13803 -11.86142 -11.55866 -11.38303 -10.93849 -10.62669 -10.49484 -10.23136 -9.56029 -8.26007 -6.42537 1.47007 1.50990 1.59535 1.65039 1.93049 2.41350 2.71630 2.96948 3.48646 3.79751 3.93348 3.96647 4.10635 4.13758 4.20561 4.28416 4.32925 4.45003 4.49679 4.50614 4.58162 4.62815 4.75139 4.82830 4.86681 4.91251 4.93156 4.95321 5.00870 5.07940 5.23421 5.26419 5.30069 5.34139 5.73924 5.94285 6.35404 6.62634 6.87696 7.15593 7.31170 7.48527 8.79890 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035305 B = 0.003078 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.898615 B = 9093.953177 C = 9422.842843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 C -0.148 4.148 4 O -0.409 6.409 5 C 0.068 3.932 6 C -0.094 4.094 7 C -0.119 4.119 8 C 0.519 3.481 9 O -0.602 6.602 10 N -0.635 5.635 11 C 0.108 3.892 12 C 0.217 3.783 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.071 0.929 16 C 0.033 3.967 17 N -0.916 5.916 18 Si 0.968 3.032 19 H -0.270 1.270 20 H -0.273 1.273 21 H -0.284 1.284 22 C 0.093 3.907 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.388 0.612 39 H 0.276 0.724 40 H 0.095 0.905 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 13.415 -10.353 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 C -0.206 4.206 4 O -0.329 6.329 5 C -0.008 4.008 6 C -0.132 4.132 7 C -0.158 4.158 8 C 0.311 3.689 9 O -0.485 6.485 10 N -0.369 5.369 11 C -0.015 4.015 12 C 0.176 3.824 13 O -0.400 6.400 14 C -0.593 4.593 15 H 0.089 0.911 16 C -0.167 4.167 17 N -0.556 5.556 18 Si 0.794 3.206 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.209 1.209 22 C -0.030 4.030 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.243 0.757 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.300 14.442 -9.384 17.272 hybrid contribution 0.113 -1.493 -0.309 1.528 sum -1.187 12.950 -9.692 16.219 Atomic orbital electron populations 1.22300 0.95446 1.02387 1.03010 1.22332 0.94249 0.94311 0.87813 1.21883 1.01584 0.93989 1.03102 1.87905 1.86947 1.20713 1.37344 1.22497 1.00334 0.81182 0.96790 1.21096 1.01974 0.92633 0.97498 1.21438 1.04256 0.95705 0.94429 1.21046 0.77045 0.79804 0.91046 1.90620 1.56713 1.60694 1.40423 1.50236 1.63896 1.05771 1.16961 1.23449 0.99425 0.86092 0.92525 1.20131 0.81220 0.91467 0.89591 1.86050 1.26407 1.63091 1.64473 1.21727 1.04024 0.97675 1.35919 0.91126 1.25731 0.95930 1.01749 0.93322 1.69375 1.17469 1.32790 1.35982 0.85394 0.78328 0.78264 0.78658 1.19552 1.19763 1.20940 1.24116 1.01479 0.81871 0.95494 0.92773 0.92723 0.89742 0.90954 0.92388 0.89132 0.92638 0.91412 0.92122 0.92661 0.91971 0.86471 0.87580 0.92721 0.88104 0.75658 0.91405 0.88663 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.53 71.98 0.69 -1.98 16 2 C 0.07 1.21 3.34 30.60 0.10 1.31 16 3 C -0.15 -2.17 9.56 71.98 0.69 -1.48 16 4 O -0.41 -9.93 9.99 -148.98 -1.49 -11.42 16 5 C 0.07 1.48 5.75 71.98 0.41 1.89 16 6 C -0.09 -2.61 4.87 30.60 0.15 -2.46 16 7 C -0.12 -3.36 5.45 29.85 0.16 -3.19 16 8 C 0.52 20.60 8.06 87.66 0.71 21.31 16 9 O -0.60 -28.20 16.71 -3.04 -0.05 -28.25 16 10 N -0.64 -26.25 3.61 -840.31 -3.03 -29.28 16 11 C 0.11 4.72 8.23 86.48 0.71 5.44 16 12 C 0.22 10.24 1.44 -10.89 -0.02 10.22 16 13 O -0.59 -30.28 13.48 -148.98 -2.01 -32.29 16 14 C -0.56 -27.21 8.62 25.60 0.22 -26.99 16 15 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 16 C 0.03 1.60 5.40 84.66 0.46 2.06 16 17 N -0.92 -44.94 11.09 21.45 0.24 -44.70 16 18 Si 0.97 38.59 29.54 68.60 2.03 40.62 16 19 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 22 C 0.09 3.76 8.00 86.47 0.69 4.45 16 23 H 0.05 0.86 7.87 -2.38 -0.02 0.84 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.04 7.79 -2.39 -0.02 1.02 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 31 H 0.06 1.17 7.87 -2.39 -0.02 1.15 16 32 H 0.05 1.76 8.10 -2.38 -0.02 1.74 16 33 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 34 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.10 4.03 8.09 -2.38 -0.02 4.01 16 38 H 0.39 20.12 6.46 -74.06 -0.48 19.64 16 39 H 0.28 12.83 8.31 -92.71 -0.77 12.06 16 40 H 0.10 3.59 8.09 -2.39 -0.02 3.57 16 41 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -60.71 343.83 1.18 -59.53 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.52 Total: 35.18 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 4.97 Total: 10.59 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -2.79 Total: -73.97 kcal Atomic # 8 Polarization: -68.40 SS G_CDS: -3.55 Total: -71.95 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -60.71 1.18 -59.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332028564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.686 kcal (2) G-P(sol) polarization free energy of solvation -60.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds