Wall clock time and date at job start Mon Mar 30 2020 01:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46852 * 2 1 4 4 C 1.52997 * 109.46599 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.42898 * 114.00376 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47233 * 329.99853 * 6 5 4 8 8 C 1.52998 * 109.47086 * 89.99740 * 6 5 4 9 9 C 1.50692 * 109.47492 * 209.99864 * 6 5 4 10 10 O 1.21281 * 120.00417 * 353.42934 * 9 6 5 11 11 N 1.34785 * 120.00242 * 173.43154 * 9 6 5 12 12 C 1.47061 * 136.05606 * 354.96930 * 11 9 6 13 13 C 1.53492 * 88.05105 * 207.05938 * 12 11 9 14 14 O 1.42904 * 114.20443 * 87.55022 * 13 12 11 15 15 C 1.50697 * 114.20799 * 220.37325 * 13 12 11 16 16 H 1.07997 * 119.99917 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99877 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00048 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00132 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47384 * 89.99801 * 19 17 15 21 21 H 1.48503 * 109.47191 * 210.00498 * 19 17 15 22 22 H 1.48508 * 109.46990 * 330.00295 * 19 17 15 23 23 C 1.47062 * 136.05844 * 174.92584 * 11 9 6 24 24 H 1.08996 * 109.47278 * 300.00208 * 1 2 3 25 25 H 1.09001 * 109.46867 * 59.99858 * 1 2 3 26 26 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47030 * 239.99929 * 2 1 3 28 28 H 1.09001 * 109.46867 * 120.00141 * 2 1 3 29 29 H 1.08992 * 109.47057 * 60.00232 * 3 2 1 30 30 H 1.09000 * 109.46600 * 299.99620 * 3 2 1 31 31 H 1.08996 * 109.47627 * 59.99734 * 4 3 2 32 32 H 1.09007 * 109.47240 * 299.99409 * 4 3 2 33 33 H 1.09005 * 109.47535 * 305.11430 * 8 6 5 34 34 H 1.09000 * 109.47385 * 65.12083 * 8 6 5 35 35 H 1.09011 * 109.47214 * 185.11914 * 8 6 5 36 36 H 1.09003 * 113.47288 * 321.87002 * 12 11 9 37 37 H 1.08999 * 113.46645 * 92.24954 * 12 11 9 38 38 H 0.96699 * 113.99921 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99936 * 180.02562 * 18 17 15 40 40 H 1.08999 * 113.46672 * 267.68998 * 23 11 9 41 41 H 1.09008 * 113.46991 * 38.07271 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.4708 2.9026 0.0000 7 1 5.9034 2.0439 0.5135 8 6 5.9792 2.9435 -1.4425 9 6 5.8745 4.1685 0.7109 10 8 5.0277 4.9605 1.0670 11 7 7.1765 4.4208 0.9510 12 6 8.4457 3.7006 0.7692 13 6 9.0146 4.5140 1.9399 14 8 8.7816 3.9334 3.2247 15 6 10.4355 4.9745 1.7397 16 1 10.9608 4.7249 0.8297 17 6 11.0644 5.7154 2.7177 18 7 10.4244 6.0198 3.8256 19 14 12.8254 6.2869 2.4693 20 1 12.8257 7.6175 1.8100 21 1 13.5039 6.3868 3.7865 22 1 13.5466 5.3105 1.6138 23 6 7.9533 5.5378 1.5095 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9562 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9285 0.8892 33 1 5.6108 2.0712 -1.9825 34 1 5.6200 3.8504 -1.9288 35 1 7.0693 2.9379 -1.4438 36 1 8.3728 2.6331 0.9773 37 1 8.9321 3.9119 -0.1831 38 1 9.1409 4.4485 3.9601 39 1 10.8667 6.5414 4.5135 40 1 8.3090 6.2392 0.7549 41 1 7.4611 6.0331 2.3465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332051755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:06 Heat of formation + Delta-G solvation = -109.267619 kcal Electronic energy + Delta-G solvation = -21198.302244 eV Core-core repulsion = 17886.404313 eV Total energy + Delta-G solvation = -3311.897931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78308 -38.36323 -36.92706 -35.09146 -34.03972 -32.20270 -31.63156 -29.08763 -28.36626 -25.60658 -25.12788 -24.01707 -22.86979 -21.32020 -20.10888 -18.37302 -17.42625 -16.86741 -16.37792 -16.06079 -15.33421 -15.10545 -14.88467 -14.35620 -14.20559 -14.01310 -13.39760 -13.25219 -12.95589 -12.71694 -12.52113 -12.30378 -12.11109 -11.96552 -11.74969 -11.56620 -11.37589 -11.27183 -11.08484 -10.98325 -10.84137 -10.79588 -10.48879 -10.28107 -9.80556 -9.56144 -8.98300 -8.75948 -8.39954 -7.83815 -6.40583 -4.51748 3.10068 3.14149 3.19032 3.22560 3.25450 3.99229 4.17340 4.73102 4.77508 4.82266 4.89256 4.91334 5.05252 5.11320 5.21486 5.30319 5.43421 5.48797 5.57699 5.63249 5.64959 5.71573 5.75313 5.90851 5.93159 6.06161 6.11171 6.13832 6.23295 6.24161 6.43590 6.67510 6.81502 7.08958 7.23307 7.62012 7.78024 8.48286 8.52916 8.79837 9.19570 9.47308 10.66144 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.045079 B = 0.003343 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.984992 B = 8372.730652 C = 8473.868642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.058 3.942 5 O -0.359 6.359 6 C 0.077 3.923 7 H 0.081 0.919 8 C -0.165 4.165 9 C 0.536 3.464 10 O -0.541 6.541 11 N -0.635 5.635 12 C 0.099 3.901 13 C 0.241 3.759 14 O -0.572 6.572 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.910 3.090 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.080 3.920 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.395 0.605 39 H 0.275 0.725 40 H 0.079 0.921 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.066 -10.002 -8.175 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.018 4.018 5 O -0.277 6.277 6 C 0.016 3.984 7 H 0.099 0.901 8 C -0.223 4.223 9 C 0.324 3.676 10 O -0.419 6.419 11 N -0.370 5.370 12 C -0.024 4.024 13 C 0.199 3.801 14 O -0.386 6.386 15 C -0.573 4.573 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.737 3.263 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.042 4.042 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.252 0.748 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.155 -9.820 -8.186 16.327 hybrid contribution 1.328 0.574 0.190 1.460 sum -8.827 -9.246 -7.996 15.078 Atomic orbital electron populations 1.21753 0.95477 1.01569 1.02083 1.21447 0.96190 0.96136 1.02163 1.21533 0.93413 0.97049 1.03616 1.22618 0.95242 0.83971 1.00007 1.88017 1.18957 1.25763 1.94965 1.21799 0.82811 0.97211 0.96564 0.90112 1.22167 1.01949 1.03144 0.95017 1.19700 0.80925 0.87502 0.79442 1.90657 1.49292 1.49379 1.52538 1.49673 1.03487 1.22328 1.61488 1.23416 0.81220 0.97654 1.00073 1.19543 0.91305 0.87474 0.81783 1.86006 1.82183 1.53455 1.16940 1.21401 0.97339 1.34235 1.04351 0.90885 1.25102 0.98990 0.94418 0.94638 1.69271 1.37814 1.38835 1.07690 0.86302 0.83060 0.79137 0.77834 1.20274 1.20880 1.19518 1.24198 0.90658 0.92314 0.97024 0.92550 0.92642 0.92708 0.91916 0.91801 0.90907 0.91112 0.93412 0.93307 0.91626 0.91423 0.90754 0.91645 0.89500 0.74803 0.91501 0.90262 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.28 5.58 -26.73 -0.15 -1.42 16 4 C 0.06 0.72 5.75 37.16 0.21 0.93 16 5 O -0.36 -6.06 9.53 -55.05 -0.52 -6.58 16 6 C 0.08 1.28 2.96 -27.89 -0.08 1.20 16 7 H 0.08 1.21 7.79 -51.93 -0.40 0.81 16 8 C -0.16 -2.20 9.49 37.16 0.35 -1.84 16 9 C 0.54 11.50 7.41 -10.99 -0.08 11.42 16 10 O -0.54 -13.75 17.29 -14.27 -0.25 -14.00 16 11 N -0.63 -13.55 3.67 -185.05 -0.68 -14.23 16 12 C 0.10 1.95 7.03 -8.52 -0.06 1.89 16 13 C 0.24 5.72 1.58 -91.20 -0.14 5.58 16 14 O -0.57 -14.74 13.54 -35.23 -0.48 -15.22 16 15 C -0.54 -13.15 8.69 -34.44 -0.30 -13.45 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 18 N -0.90 -23.01 11.01 55.43 0.61 -22.40 16 19 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C 0.08 1.87 8.04 -8.46 -0.07 1.80 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.50 7.78 -51.93 -0.40 0.09 16 32 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.06 0.71 7.78 -51.93 -0.40 0.31 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.93 7.32 -51.92 -0.38 0.55 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 38 H 0.40 10.44 6.33 45.56 0.29 10.73 16 39 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 41 H 0.06 1.62 8.14 -51.92 -0.42 1.20 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -29.75 342.52 -7.72 -37.47 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.34 Total: 9.73 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.21 Total: 5.84 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.07 Total: -36.63 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -1.25 Total: -35.80 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.75 -7.72 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332051755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.800 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds