Wall clock time and date at job start Mon Mar 30 2020 01:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46852 * 2 1 4 4 C 1.52997 * 109.46599 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.42898 * 114.00376 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47233 * 329.99853 * 6 5 4 8 8 C 1.52998 * 109.47086 * 89.99740 * 6 5 4 9 9 C 1.50692 * 109.47492 * 209.99864 * 6 5 4 10 10 O 1.21281 * 120.00417 * 353.42934 * 9 6 5 11 11 N 1.34785 * 120.00242 * 173.43154 * 9 6 5 12 12 C 1.47061 * 136.05606 * 354.96930 * 11 9 6 13 13 C 1.53492 * 88.05105 * 207.05938 * 12 11 9 14 14 O 1.42904 * 114.20443 * 87.55022 * 13 12 11 15 15 C 1.50697 * 114.20799 * 220.37325 * 13 12 11 16 16 H 1.07997 * 119.99917 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99877 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00048 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00132 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47384 * 89.99801 * 19 17 15 21 21 H 1.48503 * 109.47191 * 210.00498 * 19 17 15 22 22 H 1.48508 * 109.46990 * 330.00295 * 19 17 15 23 23 C 1.47062 * 136.05844 * 174.92584 * 11 9 6 24 24 H 1.08996 * 109.47278 * 300.00208 * 1 2 3 25 25 H 1.09001 * 109.46867 * 59.99858 * 1 2 3 26 26 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47030 * 239.99929 * 2 1 3 28 28 H 1.09001 * 109.46867 * 120.00141 * 2 1 3 29 29 H 1.08992 * 109.47057 * 60.00232 * 3 2 1 30 30 H 1.09000 * 109.46600 * 299.99620 * 3 2 1 31 31 H 1.08996 * 109.47627 * 59.99734 * 4 3 2 32 32 H 1.09007 * 109.47240 * 299.99409 * 4 3 2 33 33 H 1.09005 * 109.47535 * 305.11430 * 8 6 5 34 34 H 1.09000 * 109.47385 * 65.12083 * 8 6 5 35 35 H 1.09011 * 109.47214 * 185.11914 * 8 6 5 36 36 H 1.09003 * 113.47288 * 321.87002 * 12 11 9 37 37 H 1.08999 * 113.46645 * 92.24954 * 12 11 9 38 38 H 0.96699 * 113.99921 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99936 * 180.02562 * 18 17 15 40 40 H 1.08999 * 113.46672 * 267.68998 * 23 11 9 41 41 H 1.09008 * 113.46991 * 38.07271 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.4708 2.9026 0.0000 7 1 5.9034 2.0439 0.5135 8 6 5.9792 2.9435 -1.4425 9 6 5.8745 4.1685 0.7109 10 8 5.0277 4.9605 1.0670 11 7 7.1765 4.4208 0.9510 12 6 8.4457 3.7006 0.7692 13 6 9.0146 4.5140 1.9399 14 8 8.7816 3.9334 3.2247 15 6 10.4355 4.9745 1.7397 16 1 10.9608 4.7249 0.8297 17 6 11.0644 5.7154 2.7177 18 7 10.4244 6.0198 3.8256 19 14 12.8254 6.2869 2.4693 20 1 12.8257 7.6175 1.8100 21 1 13.5039 6.3868 3.7865 22 1 13.5466 5.3105 1.6138 23 6 7.9533 5.5378 1.5095 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9562 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9285 0.8892 33 1 5.6108 2.0712 -1.9825 34 1 5.6200 3.8504 -1.9288 35 1 7.0693 2.9379 -1.4438 36 1 8.3728 2.6331 0.9773 37 1 8.9321 3.9119 -0.1831 38 1 9.1409 4.4485 3.9601 39 1 10.8667 6.5414 4.5135 40 1 8.3090 6.2392 0.7549 41 1 7.4611 6.0331 2.3465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332051755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:05 Heat of formation + Delta-G solvation = -129.231660 kcal Electronic energy + Delta-G solvation = -21199.167950 eV Core-core repulsion = 17886.404313 eV Total energy + Delta-G solvation = -3312.763637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44108 -39.78889 -38.47933 -35.95197 -35.90831 -34.12577 -32.85485 -30.30116 -29.69611 -27.36271 -26.84130 -25.15063 -23.93935 -22.14932 -21.77710 -20.04591 -19.24428 -18.22855 -17.83975 -17.18243 -16.99445 -16.70211 -16.35730 -15.95624 -15.49503 -15.06662 -14.81966 -14.54772 -14.31551 -14.24976 -13.79222 -13.59809 -13.43501 -13.22849 -13.16796 -12.83916 -12.76717 -12.61533 -12.31718 -12.22722 -12.17629 -11.96442 -11.84967 -11.54707 -11.43047 -10.93850 -10.72280 -10.47070 -10.25996 -9.61266 -8.27139 -6.45173 1.48008 1.50232 1.53542 1.60215 1.67871 2.40145 2.74648 2.95594 3.39494 3.73131 3.84944 3.92657 4.01143 4.09753 4.16013 4.20627 4.39662 4.41637 4.48742 4.60443 4.63866 4.69440 4.70247 4.76825 4.89223 4.90868 4.93328 4.94374 5.04027 5.13086 5.23114 5.23609 5.34112 5.44088 5.73351 5.88577 6.12188 6.63069 6.83975 7.10737 7.29227 7.44588 8.79109 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.045079 B = 0.003343 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.984992 B = 8372.730652 C = 8473.868642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.117 4.117 4 C 0.052 3.948 5 O -0.390 6.390 6 C 0.085 3.915 7 H 0.101 0.899 8 C -0.157 4.157 9 C 0.524 3.476 10 O -0.594 6.594 11 N -0.634 5.634 12 C 0.116 3.884 13 C 0.217 3.783 14 O -0.585 6.585 15 C -0.546 4.546 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.925 5.925 19 Si 0.974 3.026 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.260 1.260 23 C 0.077 3.923 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.388 0.612 39 H 0.275 0.725 40 H 0.088 0.912 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 -12.014 -10.250 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.024 4.024 5 O -0.310 6.310 6 C 0.024 3.976 7 H 0.118 0.882 8 C -0.215 4.215 9 C 0.315 3.685 10 O -0.475 6.475 11 N -0.368 5.368 12 C -0.006 4.006 13 C 0.176 3.824 14 O -0.398 6.398 15 C -0.584 4.584 16 H 0.105 0.895 17 C -0.176 4.176 18 N -0.566 5.566 19 Si 0.799 3.201 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.184 1.184 23 C -0.047 4.047 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.243 0.757 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.299 -11.871 -10.289 18.255 hybrid contribution 1.003 1.214 0.876 1.802 sum -8.297 -10.657 -9.413 16.462 Atomic orbital electron populations 1.21767 0.94972 1.02366 1.01880 1.21427 0.96602 0.94348 1.03003 1.21558 0.92704 0.98636 1.02595 1.22903 0.95908 0.82164 1.01454 1.87992 1.19085 1.28672 1.95201 1.21808 0.83222 0.94510 0.98035 0.88161 1.22158 1.02635 1.04049 0.92616 1.20816 0.80146 0.88831 0.78740 1.90621 1.50588 1.51578 1.54723 1.49726 1.04255 1.21776 1.61059 1.23441 0.79514 0.98115 0.99500 1.19896 0.91433 0.89007 0.82103 1.85990 1.82320 1.53740 1.17760 1.21727 0.97776 1.34070 1.04833 0.89544 1.25909 1.02678 0.94608 0.94430 1.69371 1.39259 1.39487 1.08458 0.85295 0.78572 0.78685 0.77515 1.20179 1.21266 1.18413 1.24126 0.91099 0.92990 0.96436 0.93198 0.92492 0.91390 0.90456 0.91514 0.92825 0.91325 0.90657 0.92964 0.88394 0.92695 0.89517 0.89588 0.86295 0.75664 0.91552 0.89373 0.95266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.69 5.93 30.60 0.18 -1.51 16 3 C -0.12 -2.39 5.58 30.59 0.17 -2.22 16 4 C 0.05 1.16 5.75 71.98 0.41 1.58 16 5 O -0.39 -12.77 9.53 -130.03 -1.24 -14.01 16 6 C 0.09 2.65 2.96 29.84 0.09 2.74 16 7 H 0.10 2.71 7.79 -2.39 -0.02 2.69 16 8 C -0.16 -3.67 9.49 71.98 0.68 -2.99 16 9 C 0.52 22.44 7.41 87.65 0.65 23.09 16 10 O -0.59 -31.14 17.29 15.92 0.28 -30.87 16 11 N -0.63 -26.74 3.67 -858.17 -3.15 -29.89 16 12 C 0.12 4.28 7.03 83.17 0.58 4.86 16 13 C 0.22 10.22 1.58 -11.17 -0.02 10.21 16 14 O -0.59 -30.55 13.54 -148.98 -2.02 -32.57 16 15 C -0.55 -26.25 8.69 25.60 0.22 -26.03 16 16 H 0.09 3.83 7.81 -2.91 -0.02 3.81 16 17 C 0.02 1.15 5.40 84.66 0.46 1.61 16 18 N -0.92 -48.22 11.01 21.45 0.24 -47.98 16 19 Si 0.97 38.87 29.54 68.60 2.03 40.90 16 20 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.29 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 C 0.08 3.64 8.04 83.21 0.67 4.31 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.28 7.78 -2.39 -0.02 1.27 16 32 H 0.05 1.13 8.08 -2.38 -0.02 1.11 16 33 H 0.10 1.67 7.78 -2.38 -0.02 1.65 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.81 7.32 -2.38 -0.02 1.79 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.12 3.66 8.10 -2.39 -0.02 3.64 16 38 H 0.39 21.13 6.33 -74.06 -0.47 20.66 16 39 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 40 H 0.09 3.94 8.10 -2.39 -0.02 3.92 16 41 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -65.98 342.52 1.48 -64.50 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.53 Total: 35.59 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 4.82 Total: 14.33 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -2.92 Total: -77.88 kcal Atomic # 8 Polarization: -74.46 SS G_CDS: -2.98 Total: -77.44 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -65.98 1.48 -64.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332051755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.732 kcal (2) G-P(sol) polarization free energy of solvation -65.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds