Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46932 * 2 1 4 4 H 1.08997 * 109.47322 * 54.49936 * 3 2 1 5 5 C 1.53002 * 109.47024 * 294.49496 * 3 2 1 6 6 C 1.53005 * 109.47085 * 174.49730 * 3 2 1 7 7 H 1.09000 * 109.46977 * 305.36730 * 6 3 2 8 8 O 1.42900 * 109.47329 * 65.36792 * 6 3 2 9 9 C 1.42898 * 113.99979 * 260.25777 * 8 6 3 10 10 C 1.50704 * 109.46853 * 185.36897 * 6 3 2 11 11 O 1.21282 * 119.99598 * 245.26932 * 10 6 3 12 12 N 1.34770 * 120.00068 * 64.99991 * 10 6 3 13 13 C 1.47068 * 136.06164 * 359.62976 * 12 10 6 14 14 C 1.53239 * 88.08481 * 207.20239 * 13 12 10 15 15 O 1.42902 * 114.19586 * 87.72782 * 14 13 12 16 16 C 1.50701 * 114.32474 * 220.46744 * 14 13 12 17 17 H 1.07996 * 119.99977 * 93.75944 * 16 14 13 18 18 C 1.37876 * 119.99715 * 273.75998 * 16 14 13 19 19 N 1.31517 * 120.00220 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99770 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47124 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47001 * 119.99873 * 20 18 16 23 23 H 1.48500 * 109.46967 * 239.99692 * 20 18 16 24 24 C 1.47068 * 136.05737 * 179.97438 * 12 10 6 25 25 H 1.09007 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47189 * 300.00016 * 1 2 3 27 27 H 1.09000 * 109.47334 * 60.00238 * 1 2 3 28 28 H 1.09000 * 109.47189 * 239.99984 * 2 1 3 29 29 H 1.09000 * 109.47334 * 119.99762 * 2 1 3 30 30 H 1.08996 * 109.47182 * 60.00535 * 5 3 2 31 31 H 1.09007 * 109.46792 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47413 * 299.99605 * 5 3 2 33 33 H 1.09003 * 109.46962 * 56.32376 * 9 8 6 34 34 H 1.08999 * 109.47359 * 176.31378 * 9 8 6 35 35 H 1.09000 * 109.47462 * 296.32176 * 9 8 6 36 36 H 1.09011 * 113.46375 * 321.93597 * 13 12 10 37 37 H 1.08996 * 113.46774 * 92.36838 * 13 12 10 38 38 H 0.96687 * 114.00397 * 86.30047 * 15 14 13 39 39 H 0.97006 * 119.99891 * 179.97438 * 19 18 16 40 40 H 1.08996 * 113.46987 * 267.62684 * 24 12 10 41 41 H 1.08998 * 113.46673 * 38.00856 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 6 1.6460 2.1227 -1.3127 6 6 3.5637 1.4448 0.1383 7 1 3.8489 0.8776 1.0244 8 8 4.1480 0.8451 -1.0197 9 6 4.5370 -0.5175 -0.8350 10 6 4.0539 2.8637 0.2709 11 8 4.7508 3.3479 -0.5957 12 7 3.7134 3.5963 1.3496 13 6 2.9084 3.3849 2.5621 14 6 2.6460 4.8945 2.5889 15 8 1.5127 5.3057 1.8217 16 6 2.6881 5.5075 3.9650 17 1 3.6048 5.9427 4.3344 18 6 1.5561 5.5126 4.7522 19 7 0.4397 4.9829 4.3020 20 14 1.6080 6.2731 6.4576 21 1 2.9715 6.7971 6.7246 22 1 0.6263 7.3846 6.5340 23 1 1.2676 5.2415 7.4701 24 6 3.9785 4.9610 1.8294 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5605 2.1212 -1.4112 31 1 2.0097 3.1503 -1.3128 32 1 2.0876 1.5813 -2.1493 33 1 3.6757 -1.1000 -0.5079 34 1 4.9108 -0.9194 -1.7767 35 1 5.3209 -0.5725 -0.0797 36 1 2.0098 2.7926 2.3887 37 1 3.4900 3.0301 3.4129 38 1 0.6753 5.2625 2.3030 39 1 -0.3566 4.9862 4.8561 40 1 4.8478 5.0301 2.4833 41 1 3.9891 5.7063 1.0341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332060398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = -120.099557 kcal Electronic energy + Delta-G solvation = -22521.439812 eV Core-core repulsion = 19209.072173 eV Total energy + Delta-G solvation = -3312.367639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61396 -39.98290 -38.42496 -36.40927 -35.83417 -34.10876 -31.87035 -30.28948 -28.59722 -27.45327 -26.97274 -26.61644 -24.57448 -21.95953 -21.19202 -20.01449 -19.30734 -18.04043 -17.77111 -17.27609 -16.97641 -16.54904 -16.29643 -15.87457 -15.54689 -15.03888 -14.82963 -14.66007 -14.42888 -14.10200 -13.92727 -13.69434 -13.40573 -13.13239 -12.92012 -12.81922 -12.78557 -12.58847 -12.35784 -12.22631 -12.14248 -12.10096 -11.67941 -11.44436 -11.29842 -11.02152 -10.68915 -10.39903 -10.18214 -9.59880 -8.26632 -6.43346 1.46579 1.51111 1.54840 1.61806 1.72856 2.41239 2.87966 2.97384 3.39210 3.65520 3.74976 3.78642 4.00324 4.13812 4.16685 4.44340 4.45953 4.50576 4.52693 4.59458 4.62935 4.66145 4.73827 4.78481 4.83201 4.89199 4.90402 5.02689 5.11081 5.16051 5.19508 5.24552 5.40961 5.48172 5.74164 5.91926 6.08682 6.62523 6.83404 7.12265 7.30701 7.51282 8.79689 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023083 B = 0.005608 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.731816 B = 4991.740312 C = 5563.907008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.074 0.926 5 C -0.131 4.131 6 C 0.095 3.905 7 H 0.103 0.897 8 O -0.380 6.380 9 C 0.015 3.985 10 C 0.526 3.474 11 O -0.588 6.588 12 N -0.634 5.634 13 C 0.084 3.916 14 C 0.222 3.778 15 O -0.585 6.585 16 C -0.551 4.551 17 H 0.073 0.927 18 C 0.035 3.965 19 N -0.915 5.915 20 Si 0.969 3.031 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.275 1.275 24 C 0.105 3.895 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.015 0.985 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.389 0.611 39 H 0.277 0.723 40 H 0.104 0.896 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -12.469 -2.536 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.092 0.908 5 C -0.189 4.189 6 C 0.033 3.967 7 H 0.120 0.880 8 O -0.298 6.298 9 C -0.081 4.081 10 C 0.317 3.683 11 O -0.469 6.469 12 N -0.368 5.368 13 C -0.038 4.038 14 C 0.181 3.819 15 O -0.398 6.398 16 C -0.589 4.589 17 H 0.092 0.908 18 C -0.166 4.166 19 N -0.556 5.556 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.201 1.201 24 C -0.018 4.018 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.145 -12.216 -3.771 12.836 hybrid contribution -0.372 0.545 1.335 1.489 sum 0.773 -11.672 -2.437 11.948 Atomic orbital electron populations 1.21800 0.94801 1.02465 1.01815 1.21609 0.96922 0.93340 1.02922 1.21637 0.91818 0.99373 0.99415 0.90805 1.21632 1.01480 0.98436 0.97315 1.21862 0.94344 0.89696 0.90749 0.87957 1.87986 1.80579 1.27638 1.33626 1.23261 0.99973 0.81116 1.03711 1.20787 0.79222 0.88345 0.79986 1.90610 1.41059 1.73587 1.41640 1.49707 1.50998 1.16036 1.20103 1.24072 0.93568 1.02002 0.84179 1.19725 0.83370 0.89993 0.88839 1.86045 1.19977 1.89309 1.44450 1.21668 0.98205 1.40052 0.99001 0.90837 1.25725 0.94607 0.94019 1.02222 1.69325 1.01886 1.45060 1.39354 0.85329 0.78295 0.78079 0.78850 1.19216 1.20907 1.20091 1.23379 0.99495 0.82735 0.96163 0.90864 0.93393 0.92645 0.90451 0.90686 0.91097 0.96556 0.91725 0.91360 0.87853 0.93530 0.91176 0.88595 0.75481 0.91320 0.87822 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.68 71.98 0.70 -2.38 16 2 C -0.11 -2.38 4.19 30.59 0.13 -2.25 16 3 C -0.10 -3.09 2.17 -10.79 -0.02 -3.11 16 4 H 0.07 2.50 5.63 -2.39 -0.01 2.49 16 5 C -0.13 -4.26 8.57 71.98 0.62 -3.64 16 6 C 0.09 3.08 2.21 29.85 0.07 3.14 16 7 H 0.10 2.81 7.71 -2.39 -0.02 2.79 16 8 O -0.38 -12.02 8.80 -130.00 -1.14 -13.16 16 9 C 0.01 0.31 10.39 113.37 1.18 1.48 16 10 C 0.53 22.41 6.42 87.66 0.56 22.97 16 11 O -0.59 -29.61 17.28 15.95 0.28 -29.33 16 12 N -0.63 -26.98 3.65 -859.29 -3.14 -30.12 16 13 C 0.08 3.46 7.47 83.09 0.62 4.08 16 14 C 0.22 10.50 1.57 -11.29 -0.02 10.48 16 15 O -0.58 -30.26 13.54 -148.98 -2.02 -32.28 16 16 C -0.55 -26.81 8.69 25.60 0.22 -26.58 16 17 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 18 C 0.03 1.66 5.40 84.65 0.46 2.12 16 19 N -0.92 -44.73 11.01 21.45 0.24 -44.49 16 20 Si 0.97 38.28 29.54 68.60 2.03 40.31 16 21 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 24 C 0.10 4.65 8.04 83.18 0.67 5.32 16 25 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.14 6.58 -2.39 -0.02 1.13 16 28 H 0.08 1.51 6.63 -2.39 -0.02 1.50 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 2.02 6.58 -2.39 -0.02 2.00 16 31 H 0.02 0.62 7.39 -2.38 -0.02 0.60 16 32 H 0.06 2.00 7.55 -2.39 -0.02 1.98 16 33 H 0.07 1.09 5.86 -2.39 -0.01 1.07 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 2.83 6.11 -2.38 -0.01 2.82 16 37 H 0.10 3.64 8.10 -2.39 -0.02 3.62 16 38 H 0.39 20.29 6.32 -74.07 -0.47 19.83 16 39 H 0.28 12.75 8.31 -92.70 -0.77 11.98 16 40 H 0.10 4.13 8.10 -2.39 -0.02 4.11 16 41 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -61.68 327.48 1.98 -59.71 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.56 Total: 37.73 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.18 Total: 11.63 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -2.90 Total: -74.61 kcal Atomic # 8 Polarization: -71.89 SS G_CDS: -2.88 Total: -74.77 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -61.68 1.98 -59.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332060398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.394 kcal (2) G-P(sol) polarization free energy of solvation -61.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds