Wall clock time and date at job start Mon Mar 30 2020 01:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99719 * 2 1 4 4 C 1.52998 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46931 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47467 * 59.99707 * 5 4 3 7 7 C 1.52994 * 109.47220 * 299.99600 * 5 4 3 8 8 C 1.50700 * 109.47136 * 179.97438 * 5 4 3 9 9 O 1.21285 * 120.00096 * 6.52637 * 8 5 4 10 10 N 1.34780 * 120.00263 * 186.52667 * 8 5 4 11 11 C 1.47581 * 134.49493 * 175.04927 * 10 8 5 12 12 C 1.53946 * 86.11686 * 155.36268 * 11 10 8 13 13 O 1.42899 * 113.74011 * 269.15652 * 12 11 10 14 14 C 1.50696 * 113.74332 * 137.95523 * 12 11 10 15 15 H 1.08008 * 119.99515 * 359.97438 * 14 12 11 16 16 C 1.37868 * 120.00256 * 180.02562 * 14 12 11 17 17 N 1.31522 * 120.00175 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00184 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47158 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.46880 * 299.99543 * 18 16 14 21 21 H 1.48497 * 109.47212 * 59.99556 * 18 16 14 22 22 C 1.47577 * 134.48940 * 355.05340 * 10 8 5 23 23 H 1.08999 * 109.46836 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47580 * 300.00462 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00435 * 1 2 3 26 26 H 1.08998 * 109.47678 * 59.99691 * 3 2 1 27 27 H 1.09007 * 109.47040 * 299.99825 * 3 2 1 28 28 H 1.08995 * 109.47330 * 59.99811 * 4 3 2 29 29 H 1.08999 * 109.46954 * 299.99302 * 4 3 2 30 30 H 1.08999 * 109.47684 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47192 * 300.00145 * 6 5 4 32 32 H 1.08999 * 109.47204 * 60.00020 * 6 5 4 33 33 H 1.09004 * 109.47501 * 305.18847 * 7 5 4 34 34 H 1.09000 * 109.47714 * 65.18715 * 7 5 4 35 35 H 1.09004 * 109.47400 * 185.19347 * 7 5 4 36 36 H 1.08998 * 113.76580 * 41.06231 * 11 10 8 37 37 H 1.08996 * 113.87029 * 269.67850 * 11 10 8 38 38 H 0.96702 * 114.00041 * 178.07577 * 13 12 11 39 39 H 0.96993 * 119.99891 * 180.02562 * 17 16 14 40 40 H 1.09005 * 113.76759 * 90.34092 * 22 10 8 41 41 H 1.08996 * 113.77260 * 318.93683 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 -0.0013 6 6 3.7067 3.3421 1.2479 7 6 3.7057 3.3413 -1.2505 8 6 5.6599 2.4635 -0.0013 9 8 6.1821 1.3754 -0.1202 10 7 6.4233 3.5664 0.1309 11 6 7.8726 3.8115 0.2632 12 6 7.5829 5.2088 -0.3142 13 8 7.6816 5.2748 -1.7382 14 6 8.3309 6.3186 0.3786 15 1 8.9952 6.0916 1.1994 16 6 8.1666 7.6235 -0.0348 17 7 7.3573 7.8999 -1.0340 18 14 9.0944 8.9991 0.8235 19 1 8.7466 10.2984 0.1944 20 1 8.7193 9.0279 2.2600 21 1 10.5553 8.7642 0.6980 22 6 6.1455 5.0141 0.2014 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.6885 1.8465 0.8899 27 1 1.6885 1.8464 -0.8901 28 1 3.8567 0.6439 -0.8908 29 1 3.8574 0.6437 0.8892 30 1 4.1496 4.3381 1.2472 31 1 2.6200 3.4282 1.2483 32 1 4.0287 2.8015 2.1379 33 1 3.9454 2.7557 -2.1381 34 1 2.6295 3.5080 -1.2050 35 1 4.2203 4.3010 -1.2988 36 1 8.4849 3.1860 -0.3864 37 1 8.2250 3.8266 1.2945 38 1 7.4717 6.1436 -2.1073 39 1 7.2420 8.8179 -1.3250 40 1 5.9888 5.3825 1.2153 41 1 5.3790 5.3490 -0.4974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332072550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:25 Heat of formation + Delta-G solvation = -126.466414 kcal Electronic energy + Delta-G solvation = -21986.733210 eV Core-core repulsion = 18674.089483 eV Total energy + Delta-G solvation = -3312.643726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60635 -39.65941 -38.72776 -36.77959 -35.80850 -34.11456 -31.18015 -29.78068 -28.37536 -27.29684 -27.20846 -26.84663 -25.27233 -22.56624 -20.85884 -19.67962 -19.08755 -17.83399 -17.64046 -17.08739 -17.00467 -16.47422 -16.34265 -15.88892 -15.70883 -15.37118 -14.76557 -14.63259 -14.37781 -14.12900 -13.87712 -13.47229 -13.45532 -13.38998 -13.09336 -12.75821 -12.66214 -12.57168 -12.35014 -12.26443 -12.17221 -12.01197 -11.86562 -11.77121 -11.30816 -10.81399 -10.59211 -10.54274 -10.16400 -9.53766 -8.25057 -6.41796 1.48808 1.51426 1.58030 1.63668 1.92935 2.41843 2.82550 2.97580 3.35195 3.73510 3.79755 3.84564 4.13434 4.20368 4.21073 4.26418 4.42410 4.49632 4.54741 4.57662 4.58721 4.66848 4.70151 4.81311 4.82888 4.84669 4.88291 4.91477 4.95819 5.03673 5.12362 5.26378 5.30793 5.36312 5.74324 5.94956 6.26376 6.62862 6.88022 7.15443 7.31843 7.49387 8.80532 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035720 B = 0.004191 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.688266 B = 6679.335564 C = 6933.486902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.065 3.935 4 C -0.087 4.087 5 C -0.064 4.064 6 C -0.143 4.143 7 C -0.142 4.142 8 C 0.528 3.472 9 O -0.602 6.602 10 N -0.628 5.628 11 C 0.105 3.895 12 C 0.219 3.781 13 O -0.588 6.588 14 C -0.558 4.558 15 H 0.070 0.930 16 C 0.036 3.964 17 N -0.914 5.914 18 Si 0.967 3.033 19 H -0.282 1.282 20 H -0.267 1.267 21 H -0.278 1.278 22 C 0.096 3.904 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.388 0.612 39 H 0.276 0.724 40 H 0.093 0.907 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 -4.232 3.579 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.011 4.011 4 C -0.125 4.125 5 C -0.068 4.068 6 C -0.200 4.200 7 C -0.199 4.199 8 C 0.320 3.680 9 O -0.484 6.484 10 N -0.360 5.360 11 C -0.017 4.017 12 C 0.178 3.822 13 O -0.400 6.400 14 C -0.596 4.596 15 H 0.088 0.912 16 C -0.165 4.165 17 N -0.555 5.555 18 Si 0.792 3.208 19 H -0.207 1.207 20 H -0.192 1.192 21 H -0.203 1.203 22 C -0.027 4.027 23 H 0.113 0.887 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.243 0.757 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.254 -5.590 3.447 14.791 hybrid contribution 0.573 1.303 0.082 1.426 sum -12.681 -4.287 3.529 13.843 Atomic orbital electron populations 1.22940 0.79254 1.03799 1.01104 1.87840 1.21726 1.28925 1.95666 1.22666 0.91903 0.84521 1.01965 1.21174 0.94360 0.94294 1.02640 1.20595 0.88779 0.97609 0.99768 1.22013 1.03488 1.00008 0.94519 1.21974 1.03386 0.99750 0.94824 1.20942 0.90193 0.81919 0.74990 1.90603 1.76150 1.28044 1.53646 1.50100 1.08861 1.07175 1.69894 1.23479 0.81924 0.95606 1.00693 1.20120 0.91341 0.90987 0.79760 1.86055 1.92600 1.39843 1.21506 1.21702 1.28090 0.91828 1.17940 0.91154 1.25701 0.94852 1.00775 0.95198 1.69367 1.37044 1.21528 1.27552 0.85469 0.78698 0.77662 0.78956 1.20745 1.19157 1.20340 1.24163 1.01244 0.75930 1.01317 0.88730 0.92801 0.93000 0.90990 0.91478 0.92679 0.92249 0.91712 0.88389 0.92429 0.93115 0.88172 0.92408 0.92846 0.88036 0.75686 0.91391 0.88902 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -10.14 10.70 -148.98 -1.59 -11.73 16 3 C 0.07 1.41 5.23 71.98 0.38 1.79 16 4 C -0.09 -2.51 3.95 30.59 0.12 -2.39 16 5 C -0.06 -1.93 0.56 -52.93 -0.03 -1.96 16 6 C -0.14 -3.48 7.94 71.98 0.57 -2.91 16 7 C -0.14 -3.86 7.91 71.98 0.57 -3.29 16 8 C 0.53 21.52 6.72 87.66 0.59 22.11 16 9 O -0.60 -28.92 16.71 -3.04 -0.05 -28.97 16 10 N -0.63 -26.08 3.51 -840.29 -2.95 -29.03 16 11 C 0.11 4.65 8.23 86.48 0.71 5.37 16 12 C 0.22 10.33 1.44 -10.88 -0.02 10.31 16 13 O -0.59 -30.33 13.48 -148.98 -2.01 -32.34 16 14 C -0.56 -27.28 8.62 25.60 0.22 -27.06 16 15 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 16 C 0.04 1.70 5.40 84.65 0.46 2.16 16 17 N -0.91 -44.69 11.09 21.45 0.24 -44.45 16 18 Si 0.97 38.47 29.54 68.60 2.03 40.50 16 19 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 21 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 22 C 0.10 3.87 5.70 86.48 0.49 4.36 16 23 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 1.26 6.43 -2.39 -0.02 1.25 16 27 H 0.07 1.25 6.55 -2.38 -0.02 1.23 16 28 H 0.05 1.82 8.03 -2.39 -0.02 1.81 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.68 5.66 -2.39 -0.01 1.67 16 31 H 0.10 1.72 6.43 -2.38 -0.02 1.70 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.10 1.96 6.72 -2.39 -0.02 1.94 16 35 H 0.06 1.76 5.48 -2.39 -0.01 1.75 16 36 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.10 4.06 8.09 -2.39 -0.02 4.04 16 38 H 0.39 20.12 6.46 -74.06 -0.48 19.64 16 39 H 0.28 12.83 8.31 -92.71 -0.77 12.06 16 40 H 0.09 3.52 7.73 -2.38 -0.02 3.50 16 41 H 0.08 2.99 5.99 -2.39 -0.01 2.98 16 Total: -1.00 -61.27 325.75 1.53 -59.74 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.55 Total: 36.17 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.31 Total: 10.11 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -2.71 Total: -73.48 kcal Atomic # 8 Polarization: -69.39 SS G_CDS: -3.65 Total: -73.04 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -61.27 1.53 -59.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332072550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.727 kcal (2) G-P(sol) polarization free energy of solvation -61.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds