Wall clock time and date at job start Mon Mar 30 2020 00:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47104 * 2 1 4 4 C 1.50701 * 109.46918 * 240.00360 * 2 1 3 5 5 O 1.21283 * 119.99805 * 264.99647 * 4 2 1 6 6 N 1.34774 * 120.00125 * 84.99911 * 4 2 1 7 7 C 1.46496 * 119.99945 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47091 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.47271 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99749 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00289 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00182 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99897 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46968 * 89.99804 * 13 11 9 15 15 H 1.48497 * 109.47230 * 209.99865 * 13 11 9 16 16 H 1.48507 * 109.47140 * 330.00262 * 13 11 9 17 17 C 1.52996 * 109.47169 * 120.00352 * 2 1 3 18 18 C 1.53180 * 109.54272 * 180.44534 * 17 2 1 19 19 C 1.53096 * 109.16300 * 176.84676 * 18 17 2 20 20 O 1.42905 * 109.41404 * 302.38785 * 19 18 17 21 21 C 1.42905 * 114.09321 * 61.16204 * 20 19 18 22 22 C 1.53093 * 109.41479 * 298.83564 * 21 20 19 23 23 H 1.08999 * 109.47215 * 299.99635 * 1 2 3 24 24 H 1.08996 * 109.47718 * 59.99938 * 1 2 3 25 25 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 26 26 H 0.96697 * 113.99988 * 179.97438 * 3 2 1 27 27 H 0.96999 * 119.99906 * 0.02562 * 6 4 2 28 28 H 1.08994 * 109.47923 * 300.00272 * 7 6 4 29 29 H 1.09002 * 109.47033 * 60.00554 * 7 6 4 30 30 H 1.09003 * 109.47157 * 300.00052 * 8 7 6 31 31 H 1.08993 * 109.47184 * 59.99924 * 8 7 6 32 32 H 0.96998 * 119.99831 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.61998 * 60.22178 * 17 2 1 34 34 H 1.09001 * 109.52400 * 56.94004 * 18 17 2 35 35 H 1.09004 * 109.52264 * 296.75100 * 18 17 2 36 36 H 1.09005 * 109.47867 * 182.40583 * 19 18 17 37 37 H 1.09001 * 109.48124 * 62.37304 * 19 18 17 38 38 H 1.09000 * 109.48199 * 58.82419 * 21 20 19 39 39 H 1.09008 * 109.47379 * 178.86008 * 21 20 19 40 40 H 1.09000 * 109.52171 * 177.52149 * 22 21 20 41 41 H 1.08994 * 109.52452 * 297.70913 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3207 -1.8871 -1.1761 6 7 2.1609 -0.0380 -2.3915 7 6 2.6497 -0.7284 -3.5875 8 6 2.7017 0.2549 -4.7586 9 6 3.2039 -0.4555 -5.9891 10 1 3.4600 -1.5036 -5.9408 11 6 3.3365 0.2326 -7.1765 12 7 3.7743 -0.3874 -8.2505 13 14 2.8928 2.0453 -7.2602 14 1 4.0901 2.8632 -6.9399 15 1 2.4187 2.3762 -8.6280 16 1 1.8169 2.3374 -6.2791 17 6 2.0400 -0.7213 1.2492 18 6 3.5717 -0.7125 1.2564 19 6 4.0719 -1.3662 2.5473 20 8 3.5365 -0.6664 3.6724 21 6 2.1093 -0.6817 3.7438 22 6 1.5303 -0.0005 2.5010 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 2.9702 1.4236 0.0004 27 1 1.9306 0.9033 -2.4349 28 1 3.6490 -1.1203 -3.3981 29 1 1.9775 -1.5506 -3.8326 30 1 1.7025 0.6471 -4.9483 31 1 3.3741 1.0769 -4.5132 32 1 3.8679 0.0968 -9.0858 33 1 1.6812 -1.7505 1.2496 34 1 3.9304 0.3155 1.2060 35 1 3.9433 -1.2714 0.3975 36 1 5.1607 -1.3244 2.5777 37 1 3.7469 -2.4062 2.5778 38 1 1.7587 -1.7127 3.7899 39 1 1.7844 -0.1467 4.6362 40 1 0.4419 -0.0502 2.5322 41 1 1.8477 1.0419 2.4758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346353550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:01 Heat of formation + Delta-G solvation = -178.716306 kcal Electronic energy + Delta-G solvation = -21770.933821 eV Core-core repulsion = 18456.024370 eV Total energy + Delta-G solvation = -3314.909452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82225 -39.93556 -38.05450 -36.74271 -34.89975 -34.36598 -32.40302 -32.06810 -31.24279 -27.24627 -26.46100 -24.67106 -23.79025 -22.61647 -21.54557 -20.72292 -19.23754 -18.93853 -17.69794 -17.02588 -16.79159 -16.65128 -16.57197 -16.21997 -15.83849 -15.41300 -15.34442 -14.84982 -14.62599 -14.45304 -14.01982 -13.49386 -13.44528 -13.34351 -13.18381 -13.01582 -12.77051 -12.48709 -12.23109 -12.21351 -12.16225 -11.91116 -11.78878 -11.58673 -11.53279 -11.12657 -10.81010 -10.63513 -10.32998 -10.09253 -8.32337 -6.39821 1.37820 1.40076 1.48315 1.51393 2.11586 2.34828 2.94894 3.02752 3.09325 3.42134 3.58869 3.67955 3.96109 4.04518 4.17416 4.29150 4.31503 4.36859 4.38424 4.56784 4.60937 4.70858 4.71884 4.79530 4.81893 4.83391 4.92210 5.02570 5.06051 5.13034 5.22736 5.35965 5.37492 5.39725 5.61049 6.19155 6.25021 6.34342 6.62426 6.69230 7.18061 7.25132 8.84397 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034553 B = 0.003807 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.163035 B = 7353.590999 C = 7576.688182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.137 3.863 3 O -0.544 6.544 4 C 0.481 3.519 5 O -0.577 6.577 6 N -0.709 5.709 7 C 0.144 3.856 8 C -0.012 4.012 9 C -0.540 4.540 10 H 0.029 0.971 11 C 0.005 3.995 12 N -0.950 5.950 13 Si 0.958 3.042 14 H -0.264 1.264 15 H -0.286 1.286 16 H -0.239 1.239 17 C -0.097 4.097 18 C -0.158 4.158 19 C 0.066 3.934 20 O -0.399 6.399 21 C 0.055 3.945 22 C -0.139 4.139 23 H 0.100 0.900 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.388 0.612 27 H 0.414 0.586 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.293 5.385 24.887 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.093 3.907 3 O -0.352 6.352 4 C 0.267 3.733 5 O -0.457 6.457 6 N -0.360 5.360 7 C 0.020 3.980 8 C -0.050 4.050 9 C -0.578 4.578 10 H 0.047 0.953 11 C -0.192 4.192 12 N -0.589 5.589 13 Si 0.780 3.220 14 H -0.189 1.189 15 H -0.212 1.212 16 H -0.162 1.162 17 C -0.116 4.116 18 C -0.196 4.196 19 C -0.010 4.010 20 O -0.319 6.319 21 C -0.022 4.022 22 C -0.176 4.176 23 H 0.119 0.881 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.238 0.762 27 H 0.251 0.749 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.565 4.792 24.866 26.161 hybrid contribution 0.595 0.144 -1.297 1.434 sum -5.971 4.936 23.570 24.810 Atomic orbital electron populations 1.21846 0.89276 1.03644 1.04989 1.21347 0.97255 0.82357 0.89739 1.86544 1.28271 1.23777 1.96604 1.22075 0.77500 0.87567 0.86139 1.90676 1.51288 1.17759 1.85933 1.46144 1.65562 1.14985 1.09344 1.21049 0.97664 0.95388 0.83926 1.19640 0.97694 0.95514 0.92153 1.21243 1.44639 0.97116 0.94831 0.95255 1.26064 0.94103 1.04259 0.94757 1.70069 1.47832 1.39293 1.01755 0.85555 0.80075 0.78259 0.78102 1.18896 1.21152 1.16222 1.21588 0.95727 1.00245 0.94025 1.22283 0.95695 1.02381 0.99207 1.22525 0.99429 0.94696 0.84398 1.87905 1.21717 1.76087 1.46153 1.22785 0.80070 1.00554 0.98745 1.22200 1.02069 1.00613 0.92749 0.88103 0.91379 0.90536 0.76168 0.74948 0.93618 0.93833 0.94758 0.94689 0.92275 0.90436 0.90252 0.92127 0.87952 0.93155 0.92810 0.86999 0.88777 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.47 71.98 0.61 -1.88 16 2 C 0.14 2.89 0.76 -11.54 -0.01 2.88 16 3 O -0.54 -10.05 11.53 -148.98 -1.72 -11.77 16 4 C 0.48 14.42 5.94 87.66 0.52 14.94 16 5 O -0.58 -21.74 15.03 -3.04 -0.05 -21.79 16 6 N -0.71 -22.10 5.47 -463.07 -2.53 -24.63 16 7 C 0.14 5.81 5.61 86.38 0.48 6.30 16 8 C -0.01 -0.55 4.16 29.85 0.12 -0.42 16 9 C -0.54 -30.79 9.66 25.60 0.25 -30.54 16 10 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 11 C 0.01 0.31 5.47 84.65 0.46 0.78 16 12 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 13 Si 0.96 42.35 27.47 68.60 1.88 44.23 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 17 C -0.10 -1.87 1.32 -10.67 -0.01 -1.89 16 18 C -0.16 -3.22 4.84 30.69 0.15 -3.07 16 19 C 0.07 1.25 6.84 72.01 0.49 1.75 16 20 O -0.40 -7.89 10.77 -148.98 -1.60 -9.49 16 21 C 0.05 0.80 6.84 72.01 0.49 1.29 16 22 C -0.14 -2.00 4.86 30.69 0.15 -1.85 16 23 H 0.10 1.32 6.51 -2.39 -0.02 1.31 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.39 5.90 7.25 -74.06 -0.54 5.36 16 27 H 0.41 10.89 7.91 -92.71 -0.73 10.16 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 1.45 7.20 -2.39 -0.02 1.44 16 31 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.08 1.73 7.87 -2.39 -0.02 1.71 16 34 H 0.08 1.42 6.63 -2.39 -0.02 1.40 16 35 H 0.06 1.56 6.60 -2.39 -0.02 1.55 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.09 1.04 6.62 -2.39 -0.02 1.02 16 41 H 0.08 1.21 7.60 -2.39 -0.02 1.19 16 Total: -1.00 -70.67 322.96 -0.29 -70.96 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.29 Total: 23.02 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 3.71 Total: -11.72 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.23 Total: -83.43 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -3.37 Total: -43.06 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Total: -70.67 -0.29 -70.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346353550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.752 kcal (2) G-P(sol) polarization free energy of solvation -70.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds