Wall clock time and date at job start Mon Mar 30 2020 00:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47256 * 2 1 4 4 C 1.50707 * 109.47218 * 119.99308 * 2 1 3 5 5 O 1.21276 * 119.99527 * 95.00149 * 4 2 1 6 6 N 1.34771 * 120.00227 * 275.00489 * 4 2 1 7 7 C 1.46500 * 120.00215 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47302 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.46793 * 180.02562 * 8 7 6 10 10 H 1.07993 * 119.99942 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99631 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00173 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99787 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47369 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47187 * 119.99937 * 13 11 9 16 16 H 1.48510 * 109.46867 * 239.99358 * 13 11 9 17 17 C 1.53001 * 109.47329 * 239.99731 * 2 1 3 18 18 C 1.53181 * 109.54127 * 179.82462 * 17 2 1 19 19 C 1.53108 * 109.15091 * 183.24252 * 18 17 2 20 20 O 1.42901 * 109.49209 * 57.47544 * 19 18 17 21 21 C 1.42911 * 114.09226 * 298.88832 * 20 19 18 22 22 C 1.53093 * 109.41662 * 61.15659 * 21 20 19 23 23 H 1.08997 * 109.46848 * 60.00342 * 1 2 3 24 24 H 1.08997 * 109.46819 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00440 * 1 2 3 26 26 H 0.96700 * 114.00311 * 180.02562 * 3 2 1 27 27 H 0.97006 * 119.99900 * 359.97438 * 6 4 2 28 28 H 1.08999 * 109.46980 * 300.00371 * 7 6 4 29 29 H 1.09005 * 109.46944 * 59.99812 * 7 6 4 30 30 H 1.09001 * 109.46693 * 299.99655 * 8 7 6 31 31 H 1.08990 * 109.46757 * 59.99960 * 8 7 6 32 32 H 0.97002 * 120.00603 * 180.02562 * 12 11 9 33 33 H 1.08998 * 109.53895 * 299.99650 * 17 2 1 34 34 H 1.09004 * 109.52216 * 303.05401 * 18 17 2 35 35 H 1.08996 * 109.52336 * 63.24676 * 18 17 2 36 36 H 1.08995 * 109.40657 * 297.48755 * 19 18 17 37 37 H 1.09001 * 109.48504 * 177.50700 * 19 18 17 38 38 H 1.08997 * 109.47829 * 301.16901 * 21 20 19 39 39 H 1.09005 * 109.48569 * 181.14551 * 21 20 19 40 40 H 1.09003 * 109.51975 * 182.48146 * 22 21 20 41 41 H 1.09004 * 109.57203 * 62.33286 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.3208 -1.8870 1.1762 6 7 2.1610 -0.0379 2.3915 7 6 2.6488 -0.7285 3.5879 8 6 2.7009 0.2549 4.7588 9 6 3.2034 -0.4555 5.9893 10 1 3.4594 -1.5035 5.9410 11 6 3.3351 0.2324 7.1769 12 7 3.0228 1.5086 7.2358 13 14 3.9585 -0.6479 8.7020 14 1 4.2385 -2.0687 8.3737 15 1 5.2047 0.0059 9.1762 16 1 2.9274 -0.5805 9.7686 17 6 2.0400 -0.7213 -1.2492 18 6 3.5718 -0.7184 -1.2530 19 6 4.0722 -1.3700 -2.5450 20 8 3.5403 -0.6678 -3.6702 21 6 2.1131 -0.6793 -3.7436 22 6 1.5340 0.0020 -2.5010 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.9703 1.4237 -0.0004 27 1 1.9306 0.9034 2.4349 28 1 1.9760 -1.5503 3.8327 29 1 3.6480 -1.1210 3.3988 30 1 3.3741 1.0764 4.5137 31 1 1.7020 0.6477 4.9480 32 1 3.1158 1.9927 8.0712 33 1 1.6774 -1.7492 -1.2502 34 1 3.9343 0.3083 -1.2002 35 1 3.9393 -1.2800 -0.3941 36 1 3.7447 -2.4091 -2.5770 37 1 5.1611 -1.3310 -2.5738 38 1 1.7600 -1.7094 -3.7914 39 1 1.7906 -0.1427 -4.6360 40 1 0.4455 -0.0449 -2.5338 41 1 1.8530 1.0440 -2.4737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346353551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:03 Heat of formation + Delta-G solvation = -181.222319 kcal Electronic energy + Delta-G solvation = -21709.676854 eV Core-core repulsion = 18394.658734 eV Total energy + Delta-G solvation = -3315.018121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81176 -39.92106 -38.04741 -36.69317 -34.92974 -34.35464 -32.33081 -31.85352 -31.06298 -27.13558 -26.46538 -24.72542 -23.89947 -22.76053 -21.53014 -20.72636 -19.22891 -18.48521 -17.70315 -17.01109 -16.75404 -16.62912 -16.57743 -16.46821 -15.79969 -15.36961 -15.24908 -14.79432 -14.50832 -14.28524 -13.99146 -13.49452 -13.41249 -13.23265 -13.15722 -12.95330 -12.77580 -12.53881 -12.48529 -12.29194 -12.17997 -11.91167 -11.69160 -11.58306 -11.43788 -11.12298 -10.63398 -10.62479 -10.31931 -10.05641 -8.26062 -6.37116 1.39721 1.40725 1.49218 1.53768 2.13005 2.41518 2.95384 3.08594 3.09702 3.42463 3.59562 3.68290 3.96414 4.04650 4.17682 4.30234 4.36757 4.43873 4.44549 4.56674 4.61420 4.71472 4.79295 4.80656 4.82070 4.83204 4.92189 5.02458 5.08288 5.21568 5.26179 5.38534 5.45676 5.54120 5.75745 6.13091 6.25431 6.34741 6.64199 6.76457 7.17723 7.32599 8.85914 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037151 B = 0.003558 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.505844 B = 7868.029456 C = 8148.089016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.135 3.865 3 O -0.546 6.546 4 C 0.481 3.519 5 O -0.576 6.576 6 N -0.710 5.710 7 C 0.140 3.860 8 C 0.023 3.977 9 C -0.547 4.547 10 H 0.059 0.941 11 C 0.007 3.993 12 N -0.926 5.926 13 Si 0.966 3.034 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.277 1.277 17 C -0.096 4.096 18 C -0.158 4.158 19 C 0.067 3.933 20 O -0.400 6.400 21 C 0.056 3.944 22 C -0.140 4.140 23 H 0.100 0.900 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.387 0.613 27 H 0.411 0.589 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.008 0.992 31 H 0.006 0.994 32 H 0.266 0.734 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -1.655 -21.142 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.091 3.909 3 O -0.354 6.354 4 C 0.268 3.732 5 O -0.456 6.456 6 N -0.361 5.361 7 C 0.016 3.984 8 C -0.015 4.015 9 C -0.585 4.585 10 H 0.077 0.923 11 C -0.192 4.192 12 N -0.566 5.566 13 Si 0.790 3.210 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.115 4.115 18 C -0.196 4.196 19 C -0.010 4.010 20 O -0.319 6.319 21 C -0.021 4.021 22 C -0.177 4.177 23 H 0.119 0.881 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.237 0.763 27 H 0.247 0.753 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.804 -2.116 -21.183 21.625 hybrid contribution 0.720 -0.163 1.598 1.760 sum -3.084 -2.279 -19.585 19.956 Atomic orbital electron populations 1.21842 0.89369 1.03680 1.04840 1.21382 0.97233 0.82321 0.89930 1.86550 1.28201 1.24006 1.96621 1.22048 0.77547 0.87582 0.86071 1.90652 1.51487 1.17555 1.85946 1.46224 1.65364 1.14912 1.09561 1.21245 0.97529 0.95521 0.84110 1.19127 0.96256 0.94235 0.91837 1.21484 1.44678 0.96922 0.95436 0.92295 1.25883 0.95336 0.95625 1.02351 1.70066 1.49087 1.09569 1.27842 0.85386 0.78091 0.78885 0.78620 1.18926 1.20165 1.20221 1.21581 0.95758 1.00258 0.93881 1.22286 0.95671 1.02315 0.99319 1.22520 0.99465 0.94693 0.84288 1.87904 1.21759 1.76058 1.46145 1.22779 0.80061 1.00597 0.98633 1.22201 1.02103 1.00558 0.92838 0.88086 0.90328 0.91731 0.76253 0.75341 0.93588 0.93382 0.97368 0.97560 0.92508 0.90242 0.90514 0.92032 0.93002 0.87916 0.92661 0.86993 0.88786 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.48 71.98 0.61 -2.18 16 2 C 0.14 3.14 0.76 -11.54 -0.01 3.13 16 3 O -0.55 -11.73 11.52 -148.98 -1.72 -13.44 16 4 C 0.48 15.44 5.94 87.66 0.52 15.96 16 5 O -0.58 -22.26 15.02 -3.02 -0.05 -22.30 16 6 N -0.71 -24.65 5.47 -463.06 -2.53 -27.18 16 7 C 0.14 5.99 5.61 86.38 0.48 6.47 16 8 C 0.02 1.16 5.09 29.85 0.15 1.31 16 9 C -0.55 -30.56 9.11 25.60 0.23 -30.33 16 10 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 11 C 0.01 0.39 5.46 84.65 0.46 0.85 16 12 N -0.93 -54.37 13.29 21.45 0.28 -54.08 16 13 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 17 C -0.10 -1.98 1.32 -10.68 -0.01 -1.99 16 18 C -0.16 -3.41 4.85 30.69 0.15 -3.26 16 19 C 0.07 1.31 6.84 72.02 0.49 1.80 16 20 O -0.40 -8.17 10.77 -148.98 -1.60 -9.78 16 21 C 0.06 0.85 6.84 72.01 0.49 1.34 16 22 C -0.14 -2.18 4.87 30.68 0.15 -2.04 16 23 H 0.10 1.52 6.51 -2.39 -0.02 1.50 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.39 7.08 7.26 -74.06 -0.54 6.54 16 27 H 0.41 13.07 7.91 -92.70 -0.73 12.33 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.08 1.84 7.87 -2.39 -0.02 1.82 16 34 H 0.08 1.50 6.64 -2.38 -0.02 1.48 16 35 H 0.06 1.65 6.58 -2.39 -0.02 1.63 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.09 1.15 6.63 -2.39 -0.02 1.14 16 41 H 0.08 1.31 7.60 -2.39 -0.02 1.29 16 Total: -1.00 -66.44 326.55 -0.10 -66.54 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.24 Total: 23.62 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 3.72 Total: -8.93 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -2.25 Total: -81.26 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -3.37 Total: -45.52 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -66.44 -0.10 -66.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346353551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.683 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds