Wall clock time and date at job start Mon Mar 30 2020 01:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47106 * 2 1 4 4 C 1.52996 * 109.46971 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47068 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47124 * 179.97438 * 5 4 3 7 7 C 1.42908 * 114.00107 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47335 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99855 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00197 * 179.97438 * 8 7 6 11 11 C 1.47581 * 134.49354 * 180.02562 * 10 8 7 12 12 C 1.53945 * 86.11895 * 155.35947 * 11 10 8 13 13 O 1.42904 * 113.73986 * 269.15696 * 12 11 10 14 14 C 1.50694 * 113.74220 * 137.95139 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47582 * 134.48982 * 359.97438 * 10 8 7 23 23 H 1.09008 * 109.46916 * 299.99592 * 1 2 3 24 24 H 1.08998 * 109.47282 * 60.00302 * 1 2 3 25 25 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46741 * 239.99744 * 2 1 3 27 27 H 1.09000 * 109.46939 * 120.00387 * 2 1 3 28 28 H 1.08997 * 109.47293 * 59.99795 * 3 2 1 29 29 H 1.09006 * 109.47113 * 300.00108 * 3 2 1 30 30 H 1.09004 * 109.47656 * 60.00328 * 4 3 2 31 31 H 1.08998 * 109.47149 * 299.99533 * 4 3 2 32 32 H 1.09001 * 109.47138 * 60.00163 * 5 4 3 33 33 H 1.08998 * 109.47098 * 299.99985 * 5 4 3 34 34 H 1.08994 * 109.46763 * 60.00075 * 7 6 5 35 35 H 1.09001 * 109.47081 * 300.00130 * 7 6 5 36 36 H 1.09001 * 113.77016 * 41.05438 * 11 10 8 37 37 H 1.09005 * 113.86980 * 269.67513 * 11 10 8 38 38 H 0.96699 * 113.99284 * 178.07513 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09002 * 113.76615 * 90.34214 * 22 10 8 41 41 H 1.08991 * 113.77327 * 318.94082 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 8 5.5090 2.8849 -0.0013 7 6 6.0903 4.1904 -0.0013 8 6 7.5925 4.0714 -0.0019 9 8 8.1141 2.9765 -0.0028 10 7 8.3565 5.1817 -0.0026 11 6 9.8100 5.4371 -0.0037 12 6 9.4653 6.7940 -0.6438 13 8 9.4486 6.7685 -2.0726 14 6 10.2592 7.9471 -0.0860 15 1 10.9894 7.7745 0.6907 16 6 10.0532 9.2227 -0.5673 17 7 9.1643 9.4330 -1.5135 18 14 11.0367 10.6521 0.1247 19 1 10.3115 11.2387 1.2802 20 1 12.3679 10.1676 0.5699 21 1 11.2125 11.6866 -0.9262 22 6 8.0754 6.6305 -0.0033 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9288 -0.8909 31 1 3.9337 0.9285 0.8891 32 1 3.7171 3.3990 0.8887 33 1 3.7163 3.3985 -0.8913 34 1 5.7686 4.7313 0.8887 35 1 5.7686 4.7314 -0.8913 36 1 10.3724 4.7722 -0.6594 37 1 10.2443 5.5190 0.9927 38 1 9.2038 7.6116 -2.4780 39 1 9.0191 10.3304 -1.8518 40 1 7.9976 7.0634 0.9941 41 1 7.2533 6.9183 -0.6585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356549160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:28 Heat of formation + Delta-G solvation = -117.103940 kcal Electronic energy + Delta-G solvation = -20549.349539 eV Core-core repulsion = 17237.111800 eV Total energy + Delta-G solvation = -3312.237739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.56276 -38.17995 -36.98265 -35.75733 -33.95825 -32.22617 -31.63519 -29.46823 -27.33614 -25.84944 -25.28795 -24.61273 -22.07208 -21.25772 -20.13893 -18.31465 -17.44842 -16.75117 -16.55035 -16.08936 -15.59670 -15.37947 -15.00004 -14.57512 -14.16432 -13.91126 -13.76817 -13.57334 -13.00533 -12.73557 -12.59738 -12.26807 -12.11143 -11.83443 -11.57772 -11.49917 -11.30324 -11.21850 -11.11045 -11.04488 -10.90703 -10.76627 -10.54731 -10.31382 -9.61830 -9.60676 -9.17607 -8.79206 -8.43604 -7.85865 -6.42205 -4.52315 3.07290 3.12584 3.17731 3.21420 3.25532 4.02424 4.17002 4.65155 4.68321 4.80965 4.83607 4.96211 4.98156 5.17587 5.29002 5.30865 5.33346 5.43649 5.50049 5.52529 5.59467 5.63317 5.77267 5.79880 5.92230 5.93962 6.08629 6.13188 6.16535 6.35144 6.46443 6.57229 6.63464 7.06400 7.19457 7.60678 7.79491 8.44767 8.51047 8.76419 9.18947 9.43624 10.64497 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.039842 B = 0.002851 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.603772 B = 9819.683147 C =10164.179842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.119 4.119 5 C 0.059 3.941 6 O -0.365 6.365 7 C 0.053 3.947 8 C 0.530 3.470 9 O -0.546 6.546 10 N -0.634 5.634 11 C 0.115 3.885 12 C 0.239 3.761 13 O -0.573 6.573 14 C -0.536 4.536 15 H 0.072 0.928 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.909 3.091 19 H -0.277 1.277 20 H -0.271 1.271 21 H -0.284 1.284 22 C 0.074 3.926 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.393 0.607 39 H 0.273 0.727 40 H 0.083 0.917 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 -8.010 3.156 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.017 4.017 6 O -0.283 6.283 7 C -0.027 4.027 8 C 0.318 3.682 9 O -0.424 6.424 10 N -0.369 5.369 11 C -0.007 4.007 12 C 0.197 3.803 13 O -0.385 6.385 14 C -0.574 4.574 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.736 3.264 19 H -0.203 1.203 20 H -0.195 1.195 21 H -0.209 1.209 22 C -0.049 4.049 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.416 -9.406 3.122 16.680 hybrid contribution -0.059 1.778 0.294 1.803 sum -13.476 -7.628 3.416 15.857 Atomic orbital electron populations 1.21781 0.95897 1.01558 1.01795 1.21518 0.95741 0.96690 1.02293 1.21535 0.94503 0.97176 1.02256 1.21517 0.94859 0.95597 1.03645 1.22565 0.81124 0.97928 1.00131 1.87983 1.19014 1.25913 1.95428 1.22107 0.92333 0.86003 1.02246 1.19732 0.87832 0.83494 0.77175 1.90656 1.74659 1.26108 1.50982 1.50103 1.09351 1.06247 1.71233 1.23465 0.80539 0.96534 1.00128 1.19834 0.89437 0.90660 0.80366 1.86067 1.92253 1.41293 1.18895 1.21513 1.22802 0.91417 1.21651 0.90988 1.25079 0.94465 0.99252 0.94303 1.69319 1.33595 1.23164 1.27867 0.86315 0.80407 0.81022 0.78682 1.20329 1.19519 1.20906 1.24360 1.03206 0.76153 1.01152 0.92779 0.92745 0.92813 0.91859 0.91893 0.91831 0.91789 0.90966 0.91024 0.93387 0.93282 0.90767 0.90555 0.91057 0.89561 0.75182 0.91637 0.89869 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.95 5.21 -26.74 -0.14 -1.09 16 4 C -0.12 -1.25 5.58 -26.73 -0.15 -1.40 16 5 C 0.06 0.72 5.94 37.16 0.22 0.94 16 6 O -0.37 -6.20 9.88 -55.14 -0.54 -6.74 16 7 C 0.05 0.88 6.17 36.00 0.22 1.10 16 8 C 0.53 11.27 8.13 -10.99 -0.09 11.18 16 9 O -0.55 -13.54 17.23 -14.36 -0.25 -13.79 16 10 N -0.63 -13.52 3.61 -178.32 -0.64 -14.16 16 11 C 0.11 2.52 8.23 -2.97 -0.02 2.50 16 12 C 0.24 5.65 1.44 -90.86 -0.13 5.52 16 13 O -0.57 -14.62 13.48 -35.23 -0.48 -15.10 16 14 C -0.54 -13.20 8.62 -34.44 -0.30 -13.50 16 15 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 17 N -0.90 -22.32 11.09 55.43 0.61 -21.70 16 18 Si 0.91 19.15 29.54 -169.99 -5.02 14.12 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.07 1.55 8.00 -2.99 -0.02 1.52 16 23 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 38 H 0.39 10.05 6.46 45.56 0.29 10.34 16 39 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 40 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -29.16 345.60 -7.84 -37.00 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.43 Total: 8.45 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.30 Total: 6.71 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.03 Total: -35.87 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.27 Total: -35.62 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.16 -7.84 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356549160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.100 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds