Wall clock time and date at job start Mon Mar 30 2020 00:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86794 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47031 * 240.00085 * 3 2 1 5 5 H 1.48504 * 109.46771 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47543 * 119.99792 * 3 2 1 7 7 C 1.40055 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99525 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00224 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99603 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99738 * 179.97438 * 9 7 2 12 12 C 1.46496 * 119.99722 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47123 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47081 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.42906 * 114.00358 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47498 * 179.97438 * 16 15 14 18 18 C 1.53175 * 109.53913 * 65.44549 * 17 16 15 19 19 C 1.53092 * 109.16179 * 176.85000 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 0.96994 * 119.99815 * 0.02562 * 1 2 3 24 24 H 0.96993 * 120.00098 * 0.02562 * 11 9 7 25 25 H 1.09007 * 109.47358 * 59.99520 * 12 11 9 26 26 H 1.09003 * 109.47085 * 299.99902 * 12 11 9 27 27 H 1.08994 * 109.47173 * 60.00085 * 13 12 11 28 28 H 1.09003 * 109.47059 * 299.99917 * 13 12 11 29 29 H 1.08997 * 109.47638 * 60.00003 * 14 13 12 30 30 H 1.09003 * 109.47001 * 299.99824 * 14 13 12 31 31 H 1.09005 * 109.46494 * 59.99732 * 16 15 14 32 32 H 1.09005 * 109.47052 * 300.00223 * 16 15 14 33 33 H 1.08997 * 109.61228 * 305.22844 * 17 16 15 34 34 H 1.09006 * 109.52647 * 296.75300 * 18 17 16 35 35 H 1.08998 * 109.52537 * 56.94192 * 18 17 16 36 36 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 37 37 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 38 38 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 39 39 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 40 40 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 41 41 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0945 1.6962 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2130 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4806 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6478 0.0017 12 6 1.2165 -4.9165 0.0022 13 6 2.2106 -6.0794 0.0028 14 6 1.4456 -7.4044 0.0027 15 8 2.3742 -8.4905 0.0038 16 6 1.7596 -9.7807 0.0044 17 6 2.8425 -10.8615 0.0049 18 6 3.6289 -10.7982 1.3179 19 6 4.6572 -11.9321 1.3429 20 8 3.9866 -13.1849 1.1912 21 6 3.2733 -13.3195 -0.0397 22 6 2.1894 -12.2414 -0.1202 23 1 -0.4849 0.8400 -0.0004 24 1 2.9189 -3.6478 0.0013 25 1 0.5893 -4.9744 -0.8875 26 1 0.5901 -4.9740 0.8925 27 1 2.8373 -6.0213 0.8927 28 1 2.8373 -6.0221 -0.8873 29 1 0.8192 -7.4623 -0.8874 30 1 0.8187 -7.4619 0.8925 31 1 1.1398 -9.8882 -0.8858 32 1 1.1391 -9.8871 0.8943 33 1 3.5199 -10.7012 -0.8339 34 1 4.1424 -9.8393 1.3892 35 1 2.9440 -10.9090 2.1585 36 1 5.1907 -11.9181 2.2933 37 1 5.3662 -11.7981 0.5259 38 1 2.8097 -14.3050 -0.0852 39 1 3.9640 -13.2037 -0.8748 40 1 1.4753 -12.3813 0.6914 41 1 1.6733 -12.3145 -1.0775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356847845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:39 Heat of formation + Delta-G solvation = -158.214101 kcal Electronic energy + Delta-G solvation = -20121.241066 eV Core-core repulsion = 16807.220656 eV Total energy + Delta-G solvation = -3314.020410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81735 -38.12314 -37.25387 -34.83023 -33.84065 -32.39738 -31.43994 -30.74549 -27.73680 -26.46353 -24.37369 -23.83086 -22.94830 -21.34560 -20.33771 -19.66220 -17.15397 -16.68779 -16.56042 -16.36335 -16.15793 -15.33507 -15.13918 -15.07440 -14.57159 -14.12544 -13.99039 -13.83276 -13.59378 -12.82419 -12.61019 -12.38248 -12.20091 -11.76005 -11.66339 -11.55047 -11.26324 -11.09453 -11.04973 -10.96053 -10.81259 -10.61443 -10.52634 -10.43166 -10.23793 -9.85418 -9.65089 -8.83618 -7.61745 -7.49951 -6.17628 -4.63162 3.16750 3.21247 3.23289 3.41536 3.56856 4.12101 4.34378 4.46785 4.51838 4.59970 4.66257 4.86065 4.94423 5.03141 5.04848 5.11606 5.18841 5.23683 5.33819 5.38287 5.44522 5.47988 5.50192 5.55853 5.71149 5.72903 5.74348 5.87806 5.92575 6.00924 6.07570 6.56889 6.57537 6.85388 7.12879 7.44322 7.94265 8.10635 8.33850 9.03223 9.54755 10.61144 10.79528 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.055573 B = 0.002293 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.719449 B =12207.950116 C =12558.358174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.768 5.768 12 C 0.136 3.864 13 C -0.126 4.126 14 C 0.067 3.933 15 O -0.388 6.388 16 C 0.068 3.932 17 C -0.088 4.088 18 C -0.148 4.148 19 C 0.059 3.941 20 O -0.386 6.386 21 C 0.062 3.938 22 C -0.151 4.151 23 H 0.269 0.731 24 H 0.381 0.619 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.216 -23.434 -0.012 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.424 5.424 12 C 0.011 3.989 13 C -0.164 4.164 14 C -0.010 4.010 15 O -0.307 6.307 16 C -0.009 4.009 17 C -0.107 4.107 18 C -0.186 4.186 19 C -0.017 4.017 20 O -0.305 6.305 21 C -0.014 4.014 22 C -0.189 4.189 23 H 0.079 0.921 24 H 0.212 0.788 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.315 -23.444 0.128 24.279 hybrid contribution 0.534 1.010 -0.249 1.169 sum 6.849 -22.434 -0.120 23.456 Atomic orbital electron populations 1.70015 1.07071 1.27357 1.35331 1.25723 0.94637 1.00319 0.92629 0.86416 0.79788 0.80977 0.79440 1.19286 1.20577 1.19276 1.20856 0.93570 0.89401 1.54461 0.91437 1.18225 0.87207 0.82446 0.76333 1.90594 1.14122 1.86894 1.54927 1.46105 1.08612 1.04812 1.82849 1.20707 0.93780 0.83725 1.00728 1.21692 0.99162 0.92169 1.03348 1.22425 0.91828 0.86300 1.00417 1.87838 1.33893 1.13538 1.95461 1.22476 0.94941 0.83238 1.00217 1.21171 0.97271 0.93172 0.99056 1.22199 0.99030 0.99824 0.97507 1.22630 0.93823 0.83271 1.02004 1.87929 1.67836 1.35924 1.38768 1.22542 0.93201 0.98924 0.86766 1.22196 0.99080 0.94459 1.03127 0.92062 0.78776 0.93354 0.93355 0.90964 0.90983 0.93133 0.93127 0.93327 0.93302 0.90175 0.89802 0.91143 0.88796 0.93135 0.88801 0.93117 0.90756 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.34 11.83 55.55 0.66 -22.69 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 3 Si 0.91 20.29 29.56 -169.99 -5.02 15.26 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.55 -15.63 9.54 -35.63 -0.34 -15.97 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 16.08 7.75 -12.99 -0.10 15.98 16 10 O -0.58 -19.22 15.02 5.20 0.08 -19.15 16 11 N -0.77 -17.50 5.55 -61.72 -0.34 -17.84 16 12 C 0.14 2.62 5.67 -4.05 -0.02 2.60 16 13 C -0.13 -1.83 5.70 -26.73 -0.15 -1.98 16 14 C 0.07 0.86 5.94 37.16 0.22 1.08 16 15 O -0.39 -4.83 9.96 -35.23 -0.35 -5.18 16 16 C 0.07 0.66 5.32 37.16 0.20 0.86 16 17 C -0.09 -0.75 2.51 -90.44 -0.23 -0.97 16 18 C -0.15 -1.28 5.29 -26.59 -0.14 -1.42 16 19 C 0.06 0.47 6.84 37.21 0.25 0.73 16 20 O -0.39 -3.63 10.77 -35.23 -0.38 -4.01 16 21 C 0.06 0.44 6.84 37.20 0.25 0.69 16 22 C -0.15 -1.04 5.42 -26.59 -0.14 -1.19 16 23 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 24 H 0.38 7.58 8.45 -40.82 -0.35 7.24 16 25 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -35.08 339.13 -7.61 -42.70 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.07 Total: 3.04 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.30 Total: 2.75 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.31 Total: -40.53 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.65 Total: -28.33 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.08 -7.61 -42.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356847845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.516 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds