Wall clock time and date at job start Mon Mar 30 2020 00:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86794 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47031 * 240.00085 * 3 2 1 5 5 H 1.48504 * 109.46771 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47543 * 119.99792 * 3 2 1 7 7 C 1.40055 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99525 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00224 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99603 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99738 * 179.97438 * 9 7 2 12 12 C 1.46496 * 119.99722 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47123 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47081 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.42906 * 114.00358 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47498 * 179.97438 * 16 15 14 18 18 C 1.53175 * 109.53913 * 65.44549 * 17 16 15 19 19 C 1.53092 * 109.16179 * 176.85000 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 0.96994 * 119.99815 * 0.02562 * 1 2 3 24 24 H 0.96993 * 120.00098 * 0.02562 * 11 9 7 25 25 H 1.09007 * 109.47358 * 59.99520 * 12 11 9 26 26 H 1.09003 * 109.47085 * 299.99902 * 12 11 9 27 27 H 1.08994 * 109.47173 * 60.00085 * 13 12 11 28 28 H 1.09003 * 109.47059 * 299.99917 * 13 12 11 29 29 H 1.08997 * 109.47638 * 60.00003 * 14 13 12 30 30 H 1.09003 * 109.47001 * 299.99824 * 14 13 12 31 31 H 1.09005 * 109.46494 * 59.99732 * 16 15 14 32 32 H 1.09005 * 109.47052 * 300.00223 * 16 15 14 33 33 H 1.08997 * 109.61228 * 305.22844 * 17 16 15 34 34 H 1.09006 * 109.52647 * 296.75300 * 18 17 16 35 35 H 1.08998 * 109.52537 * 56.94192 * 18 17 16 36 36 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 37 37 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 38 38 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 39 39 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 40 40 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 41 41 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0945 1.6962 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2130 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4806 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6478 0.0017 12 6 1.2165 -4.9165 0.0022 13 6 2.2106 -6.0794 0.0028 14 6 1.4456 -7.4044 0.0027 15 8 2.3742 -8.4905 0.0038 16 6 1.7596 -9.7807 0.0044 17 6 2.8425 -10.8615 0.0049 18 6 3.6289 -10.7982 1.3179 19 6 4.6572 -11.9321 1.3429 20 8 3.9866 -13.1849 1.1912 21 6 3.2733 -13.3195 -0.0397 22 6 2.1894 -12.2414 -0.1202 23 1 -0.4849 0.8400 -0.0004 24 1 2.9189 -3.6478 0.0013 25 1 0.5893 -4.9744 -0.8875 26 1 0.5901 -4.9740 0.8925 27 1 2.8373 -6.0213 0.8927 28 1 2.8373 -6.0221 -0.8873 29 1 0.8192 -7.4623 -0.8874 30 1 0.8187 -7.4619 0.8925 31 1 1.1398 -9.8882 -0.8858 32 1 1.1391 -9.8871 0.8943 33 1 3.5199 -10.7012 -0.8339 34 1 4.1424 -9.8393 1.3892 35 1 2.9440 -10.9090 2.1585 36 1 5.1907 -11.9181 2.2933 37 1 5.3662 -11.7981 0.5259 38 1 2.8097 -14.3050 -0.0852 39 1 3.9640 -13.2037 -0.8748 40 1 1.4753 -12.3813 0.6914 41 1 1.6733 -12.3145 -1.0775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356847845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:38 Heat of formation + Delta-G solvation = -184.025944 kcal Electronic energy + Delta-G solvation = -20122.360351 eV Core-core repulsion = 16807.220656 eV Total energy + Delta-G solvation = -3315.139695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47744 -39.53692 -38.83187 -36.14271 -35.05848 -34.52288 -32.35914 -32.00648 -28.91214 -28.11991 -25.80616 -24.47811 -23.64497 -22.65877 -21.73413 -21.00001 -19.16663 -17.63172 -17.45419 -17.39661 -17.09803 -16.88149 -16.27530 -15.99848 -15.89601 -15.66510 -15.36108 -14.81745 -14.46850 -14.31823 -14.17021 -13.36490 -13.25120 -13.14347 -12.93157 -12.77831 -12.70126 -12.55562 -12.29314 -12.23875 -12.04927 -12.03579 -11.78603 -11.49854 -11.20582 -10.92153 -10.58097 -10.47729 -9.90498 -9.51285 -8.30003 -6.86822 1.40727 1.44395 1.56260 2.23990 2.46026 2.48083 2.98475 3.23954 3.60214 3.69174 3.83162 3.89064 3.98023 4.07410 4.13750 4.24525 4.29736 4.37584 4.44268 4.53217 4.55002 4.58583 4.66666 4.69753 4.79137 4.80507 4.87012 4.94172 5.12496 5.14166 5.15244 5.20097 5.31370 5.36390 5.86625 6.17566 6.23758 6.26841 6.27728 6.85638 7.53363 8.47385 8.66151 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.055573 B = 0.002293 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.719449 B =12207.950116 C =12558.358174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.634 6.634 11 N -0.756 5.756 12 C 0.137 3.863 13 C -0.109 4.109 14 C 0.071 3.929 15 O -0.400 6.400 16 C 0.063 3.937 17 C -0.087 4.087 18 C -0.146 4.146 19 C 0.059 3.941 20 O -0.406 6.406 21 C 0.057 3.943 22 C -0.146 4.146 23 H 0.275 0.725 24 H 0.397 0.603 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 -23.720 -0.314 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.522 6.522 11 N -0.411 5.411 12 C 0.013 3.987 13 C -0.147 4.147 14 C -0.006 4.006 15 O -0.319 6.319 16 C -0.013 4.013 17 C -0.105 4.105 18 C -0.184 4.184 19 C -0.018 4.018 20 O -0.325 6.325 21 C -0.019 4.019 22 C -0.183 4.183 23 H 0.085 0.915 24 H 0.231 0.769 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.063 -23.790 -0.175 25.119 hybrid contribution -0.005 0.992 -0.158 1.005 sum 8.058 -22.797 -0.333 24.182 Atomic orbital electron populations 1.70187 1.09592 1.29078 1.36364 1.27035 0.95578 1.05118 0.91174 0.85025 0.78146 0.74489 0.80337 1.17756 1.19923 1.17763 1.21426 0.94827 0.90038 1.54769 0.89264 1.18654 0.86863 0.84439 0.76117 1.90546 1.16261 1.88038 1.57355 1.45793 1.09446 1.04701 1.81197 1.20784 0.94584 0.83894 0.99484 1.21472 0.97975 0.91207 1.04002 1.22286 0.91574 0.85702 1.01003 1.87804 1.34216 1.14333 1.95581 1.22662 0.95532 0.82238 1.00866 1.21180 0.96958 0.93630 0.98756 1.22159 0.99079 0.99640 0.97478 1.22677 0.93670 0.82669 1.02738 1.87903 1.68229 1.36392 1.39981 1.22719 0.93285 0.99702 0.86210 1.22169 0.98971 0.93335 1.03861 0.91515 0.76940 0.94603 0.94674 0.90300 0.90249 0.92522 0.92720 0.92309 0.92989 0.90387 0.90722 0.91766 0.88088 0.92494 0.87355 0.92361 0.91039 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.95 11.83 21.84 0.26 -50.69 16 2 C 0.03 1.46 5.50 85.31 0.47 1.93 16 3 Si 1.00 41.05 29.56 68.60 2.03 43.07 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 7 C -0.57 -32.89 9.54 24.83 0.24 -32.66 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.53 31.67 7.75 86.36 0.67 32.34 16 10 O -0.63 -43.40 15.02 -4.31 -0.06 -43.46 16 11 N -0.76 -34.58 5.55 -467.41 -2.59 -37.18 16 12 C 0.14 5.32 5.67 86.38 0.49 5.81 16 13 C -0.11 -3.04 5.70 30.59 0.17 -2.86 16 14 C 0.07 1.73 5.94 71.98 0.43 2.16 16 15 O -0.40 -9.35 9.96 -148.98 -1.48 -10.83 16 16 C 0.06 1.14 5.32 71.98 0.38 1.52 16 17 C -0.09 -1.34 2.51 -10.68 -0.03 -1.37 16 18 C -0.15 -2.39 5.29 30.68 0.16 -2.23 16 19 C 0.06 0.88 6.84 72.01 0.49 1.37 16 20 O -0.41 -7.12 10.77 -148.98 -1.60 -8.73 16 21 C 0.06 0.70 6.84 72.01 0.49 1.19 16 22 C -0.15 -1.75 5.42 30.68 0.17 -1.59 16 23 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 24 H 0.40 15.46 8.45 -92.71 -0.78 14.68 16 25 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.35 7.93 -2.38 -0.02 1.33 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -77.07 339.13 0.89 -76.18 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.22 Total: 26.02 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.14 Total: 5.62 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.34 Total: -87.87 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -3.15 Total: -63.02 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -77.07 0.89 -76.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356847845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.847 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds