Wall clock time and date at job start Mon Mar 30 2020 01:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.42896 * 114.00086 * 180.02562 * 17 16 14 19 19 C 1.53173 * 109.54382 * 269.55797 * 18 17 16 20 20 C 1.53095 * 109.16534 * 183.15342 * 19 18 17 21 21 O 1.42906 * 109.41517 * 57.60517 * 20 19 18 22 22 C 1.42895 * 114.09748 * 298.85010 * 21 20 19 23 23 C 1.53087 * 109.41950 * 61.15395 * 22 21 20 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 28 28 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 29 29 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 30 30 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 31 31 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 32 32 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 33 33 H 1.08995 * 109.54216 * 29.82464 * 18 17 16 34 34 H 1.09006 * 109.52695 * 303.05845 * 19 18 17 35 35 H 1.09002 * 109.52597 * 63.24643 * 19 18 17 36 36 H 1.09001 * 109.47965 * 297.62416 * 20 19 18 37 37 H 1.08996 * 109.48388 * 177.59641 * 20 19 18 38 38 H 1.09008 * 109.47939 * 301.16777 * 22 21 20 39 39 H 1.09001 * 109.48958 * 181.14335 * 22 21 20 40 40 H 1.09003 * 109.52249 * 182.48166 * 23 22 21 41 41 H 1.09006 * 109.52373 * 62.29737 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7224 4.5043 -3.7603 19 6 -1.3694 5.9932 -3.6899 20 6 -1.9382 6.7033 -4.9211 21 8 -3.3516 6.4997 -4.9763 22 6 -3.7397 5.1292 -5.0905 23 6 -3.2432 4.3559 -3.8662 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8116 0.4042 0.4384 30 1 2.2954 2.1150 -1.9977 31 1 0.7620 4.1421 -2.8933 32 1 0.1091 2.6000 -3.4965 33 1 -1.2506 4.0574 -4.6354 34 1 -1.8001 6.4274 -2.7876 35 1 -0.2859 6.1102 -3.6701 36 1 -1.4770 6.2963 -5.8209 37 1 -1.7270 7.7706 -4.8552 38 1 -3.3020 4.7015 -5.9927 39 1 -4.8262 5.0623 -5.1467 40 1 -3.4999 3.3018 -3.9724 41 1 -3.7118 4.7570 -2.9674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358061485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:36 Heat of formation + Delta-G solvation = -142.523718 kcal Electronic energy + Delta-G solvation = -21410.010521 eV Core-core repulsion = 18096.670498 eV Total energy + Delta-G solvation = -3313.340023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93754 -39.12605 -37.31894 -35.15609 -32.72332 -32.47277 -31.49633 -31.43171 -28.25833 -26.61387 -24.41559 -23.86177 -22.37821 -20.82924 -20.54328 -19.53236 -17.89018 -17.28616 -16.42316 -16.40006 -16.05870 -15.78437 -15.24028 -15.08532 -14.41072 -14.07409 -13.72297 -13.42854 -13.33599 -12.69788 -12.65350 -12.47645 -12.40981 -12.16686 -11.74501 -11.61670 -11.43815 -11.10534 -10.81411 -10.70665 -10.66084 -10.43570 -10.00650 -9.86623 -9.78794 -9.64662 -9.22155 -9.08655 -8.27156 -8.10441 -6.63394 -4.22503 3.14217 3.20462 3.41031 3.46120 3.56581 3.62084 4.21940 4.43176 4.45318 4.56035 4.66059 4.79562 4.88482 5.03350 5.06111 5.14582 5.19862 5.28763 5.32446 5.35839 5.36446 5.55807 5.71622 5.88641 5.95991 6.08092 6.10250 6.28630 6.69251 6.79654 6.85201 6.96063 7.02054 7.06585 7.36455 7.42443 7.65995 8.22393 8.45536 8.68943 8.96877 9.42164 10.74531 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037148 B = 0.003655 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.560504 B = 7658.747553 C = 7908.940503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.252 3.748 4 H 0.041 0.959 5 C -0.630 4.630 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.501 3.499 15 O -0.529 6.529 16 C 0.042 3.958 17 O -0.351 6.351 18 C 0.086 3.914 19 C -0.181 4.181 20 C 0.065 3.935 21 O -0.383 6.383 22 C 0.065 3.935 23 C -0.154 4.154 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.170 7.627 -14.314 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.149 3.851 4 H 0.058 0.942 5 C -0.667 4.667 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.285 3.715 15 O -0.406 6.406 16 C -0.039 4.039 17 O -0.269 6.269 18 C 0.028 3.972 19 C -0.219 4.219 20 C -0.012 4.012 21 O -0.302 6.302 22 C -0.012 4.012 23 C -0.191 4.191 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.821 7.434 -11.822 19.648 hybrid contribution 0.750 0.074 -2.309 2.428 sum -13.071 7.508 -14.130 20.661 Atomic orbital electron populations 1.21898 0.97360 0.98870 1.02044 1.22234 0.93703 0.99698 1.01386 1.19016 0.95745 0.88448 0.81867 0.94155 1.21974 0.89678 1.50170 1.04888 0.91939 1.25611 0.96588 0.91615 1.02098 1.70875 1.13892 1.36393 1.30550 0.84230 0.76059 0.77715 0.76418 1.20816 1.20628 1.19878 1.46182 1.14164 1.56446 1.18353 1.20045 0.83010 0.79748 0.88720 1.90690 1.50419 1.58606 1.40877 1.22364 0.85797 0.98244 0.97448 1.88091 1.28909 1.74286 1.35572 1.22125 0.94987 0.91817 0.88249 1.22760 1.02138 0.96473 1.00518 1.22561 0.81277 1.01110 0.96284 1.87939 1.22541 1.25334 1.94365 1.22584 1.00720 0.81813 0.96078 1.22289 0.94488 1.01992 1.00365 0.95085 0.92986 0.93284 0.93183 0.91827 0.91877 0.77539 0.90888 0.90941 0.92087 0.89793 0.90542 0.93116 0.88484 0.93064 0.88256 0.90025 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.53 37.16 0.32 -2.67 16 2 C -0.13 -2.95 5.37 -26.73 -0.14 -3.10 16 3 C 0.25 6.02 1.84 -69.09 -0.13 5.89 16 4 H 0.04 1.06 6.12 -51.93 -0.32 0.74 16 5 C -0.63 -16.83 8.92 -34.44 -0.31 -17.14 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.89 -25.95 13.70 55.43 0.76 -25.19 16 9 Si 1.03 25.02 26.56 -169.99 -4.51 20.51 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.33 6.34 56.52 0.36 -5.97 16 13 N -0.70 -13.93 5.03 -54.93 -0.28 -14.21 16 14 C 0.50 9.62 6.51 -10.98 -0.07 9.55 16 15 O -0.53 -12.24 13.64 -14.35 -0.20 -12.43 16 16 C 0.04 0.59 6.23 36.01 0.22 0.81 16 17 O -0.35 -5.33 9.53 -55.14 -0.53 -5.85 16 18 C 0.09 0.95 2.70 -26.55 -0.07 0.88 16 19 C -0.18 -1.80 5.76 -26.59 -0.15 -1.96 16 20 C 0.06 0.54 6.84 37.21 0.25 0.80 16 21 O -0.38 -3.90 10.77 -35.23 -0.38 -4.28 16 22 C 0.06 0.53 6.84 37.20 0.25 0.79 16 23 C -0.15 -1.52 5.79 -26.60 -0.15 -1.68 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.13 7.89 -51.93 -0.41 0.72 16 26 H 0.05 1.01 5.63 -51.93 -0.29 0.72 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.50 5.77 -51.93 -0.30 1.20 16 29 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 30 H 0.39 6.76 8.53 -40.82 -0.35 6.41 16 31 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 32 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.06 0.56 7.79 -51.93 -0.40 0.16 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.70 8.00 -51.93 -0.42 0.29 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -32.28 326.03 -7.03 -39.31 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.74 Total: 3.78 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.07 Total: -6.54 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.48 Total: -39.40 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -1.10 Total: -22.57 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.51 Total: 20.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.28 -7.03 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358061485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.212 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds