Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.42896 * 114.00086 * 180.02562 * 17 16 14 19 19 C 1.53173 * 109.54382 * 269.55797 * 18 17 16 20 20 C 1.53095 * 109.16534 * 183.15342 * 19 18 17 21 21 O 1.42906 * 109.41517 * 57.60517 * 20 19 18 22 22 C 1.42895 * 114.09748 * 298.85010 * 21 20 19 23 23 C 1.53087 * 109.41950 * 61.15395 * 22 21 20 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 28 28 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 29 29 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 30 30 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 31 31 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 32 32 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 33 33 H 1.08995 * 109.54216 * 29.82464 * 18 17 16 34 34 H 1.09006 * 109.52695 * 303.05845 * 19 18 17 35 35 H 1.09002 * 109.52597 * 63.24643 * 19 18 17 36 36 H 1.09001 * 109.47965 * 297.62416 * 20 19 18 37 37 H 1.08996 * 109.48388 * 177.59641 * 20 19 18 38 38 H 1.09008 * 109.47939 * 301.16777 * 22 21 20 39 39 H 1.09001 * 109.48958 * 181.14335 * 22 21 20 40 40 H 1.09003 * 109.52249 * 182.48166 * 23 22 21 41 41 H 1.09006 * 109.52373 * 62.29737 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7224 4.5043 -3.7603 19 6 -1.3694 5.9932 -3.6899 20 6 -1.9382 6.7033 -4.9211 21 8 -3.3516 6.4997 -4.9763 22 6 -3.7397 5.1292 -5.0905 23 6 -3.2432 4.3559 -3.8662 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8116 0.4042 0.4384 30 1 2.2954 2.1150 -1.9977 31 1 0.7620 4.1421 -2.8933 32 1 0.1091 2.6000 -3.4965 33 1 -1.2506 4.0574 -4.6354 34 1 -1.8001 6.4274 -2.7876 35 1 -0.2859 6.1102 -3.6701 36 1 -1.4770 6.2963 -5.8209 37 1 -1.7270 7.7706 -4.8552 38 1 -3.3020 4.7015 -5.9927 39 1 -4.8262 5.0623 -5.1467 40 1 -3.4999 3.3018 -3.9724 41 1 -3.7118 4.7570 -2.9674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358061485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = -165.658693 kcal Electronic energy + Delta-G solvation = -21411.013729 eV Core-core repulsion = 18096.670498 eV Total energy + Delta-G solvation = -3314.343231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01253 -40.35519 -38.35828 -36.93057 -34.49982 -33.63835 -33.12936 -32.11155 -29.78885 -28.19182 -25.20690 -24.58006 -24.26974 -22.36743 -21.46742 -21.20326 -19.84108 -18.31976 -17.76567 -17.33404 -17.11689 -16.83848 -16.71916 -15.87855 -15.60636 -15.57388 -15.12063 -14.64063 -14.59237 -14.43460 -14.23527 -13.87780 -13.64087 -13.51429 -13.24591 -12.67541 -12.52194 -12.42825 -12.30886 -12.23614 -11.91279 -11.78426 -11.58865 -11.38315 -11.24145 -10.76085 -10.63933 -10.54195 -10.41847 -9.82102 -8.82186 -6.41347 1.45912 1.47850 1.68669 1.72761 1.97880 2.41191 2.90929 2.92501 3.06338 3.72055 3.74518 3.90577 3.97166 4.06803 4.16230 4.25300 4.27463 4.30411 4.39135 4.40592 4.51971 4.54248 4.67034 4.75588 4.82258 4.84643 5.03812 5.07533 5.11587 5.18366 5.20365 5.28382 5.53419 5.65534 5.69271 6.02579 6.12799 6.22698 6.54608 6.85382 7.26073 7.44917 8.54972 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037148 B = 0.003655 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.560504 B = 7658.747553 C = 7908.940503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.255 3.745 4 H 0.017 0.983 5 C -0.626 4.626 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.915 5.915 9 Si 1.060 2.940 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.257 1.257 13 N -0.700 5.700 14 C 0.497 3.503 15 O -0.572 6.572 16 C 0.051 3.949 17 O -0.385 6.385 18 C 0.080 3.920 19 C -0.179 4.179 20 C 0.065 3.935 21 O -0.404 6.404 22 C 0.066 3.934 23 C -0.153 4.153 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.263 0.737 30 H 0.406 0.594 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.247 7.788 -16.231 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.151 3.849 4 H 0.035 0.965 5 C -0.664 4.664 6 H 0.064 0.936 7 C -0.195 4.195 8 N -0.548 5.548 9 Si 0.883 3.117 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.182 1.182 13 N -0.351 5.351 14 C 0.283 3.717 15 O -0.452 6.452 16 C -0.028 4.028 17 O -0.304 6.304 18 C 0.022 3.978 19 C -0.217 4.217 20 C -0.012 4.012 21 O -0.323 6.323 22 C -0.010 4.010 23 C -0.191 4.191 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.240 0.760 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.897 7.607 -13.785 21.675 hybrid contribution 1.076 0.073 -1.780 2.081 sum -13.821 7.681 -15.564 22.187 Atomic orbital electron populations 1.21766 0.95748 1.00280 1.01249 1.22120 0.95026 0.98401 1.01099 1.18709 0.93571 0.89480 0.83168 0.96489 1.22143 0.91301 1.48813 1.04095 0.93611 1.26586 0.96718 0.91327 1.04828 1.70958 1.14973 1.38726 1.30131 0.83803 0.75833 0.78209 0.73880 1.20468 1.20173 1.18182 1.45986 1.15184 1.56487 1.17445 1.20930 0.81840 0.78767 0.90146 1.90670 1.51521 1.60085 1.42932 1.22308 0.86221 0.99526 0.94756 1.88057 1.29254 1.74960 1.38082 1.22399 0.95527 0.92097 0.87732 1.22744 1.02630 0.95997 1.00353 1.22673 0.80560 1.01760 0.96185 1.87917 1.23579 1.26444 1.94410 1.22700 1.01675 0.80835 0.95806 1.22309 0.93958 1.02509 1.00333 0.92478 0.94620 0.93258 0.92430 0.93150 0.92759 0.75952 0.88270 0.87477 0.89437 0.92272 0.89631 0.90980 0.87499 0.90952 0.87027 0.89486 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.53 71.98 0.61 -4.69 16 2 C -0.13 -5.60 5.37 30.60 0.16 -5.43 16 3 C 0.26 12.06 1.84 44.25 0.08 12.14 16 4 H 0.02 0.90 6.12 -2.39 -0.01 0.89 16 5 C -0.63 -33.54 8.92 25.60 0.23 -33.31 16 6 H 0.05 2.56 7.96 -2.91 -0.02 2.53 16 7 C 0.01 0.49 5.15 84.66 0.44 0.93 16 8 N -0.91 -54.18 13.70 21.45 0.29 -53.89 16 9 Si 1.06 50.55 26.56 68.60 1.82 52.38 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.52 6.34 99.48 0.63 -10.89 16 13 N -0.70 -26.93 5.03 -446.10 -2.24 -29.17 16 14 C 0.50 18.36 6.51 87.66 0.57 18.93 16 15 O -0.57 -26.27 13.64 16.00 0.22 -26.05 16 16 C 0.05 1.30 6.23 71.24 0.44 1.75 16 17 O -0.38 -11.00 9.53 -129.94 -1.24 -12.24 16 18 C 0.08 1.56 2.70 30.71 0.08 1.65 16 19 C -0.18 -3.24 5.76 30.68 0.18 -3.07 16 20 C 0.06 0.92 6.84 72.01 0.49 1.42 16 21 O -0.40 -7.41 10.77 -148.98 -1.60 -9.02 16 22 C 0.07 0.93 6.84 72.01 0.49 1.42 16 23 C -0.15 -2.81 5.79 30.68 0.18 -2.63 16 24 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.03 1.52 7.89 -2.39 -0.02 1.50 16 26 H 0.05 1.95 5.63 -2.39 -0.01 1.93 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.05 2.32 5.77 -2.39 -0.01 2.31 16 29 H 0.26 15.48 8.73 -92.71 -0.81 14.68 16 30 H 0.41 13.28 8.53 -92.71 -0.79 12.49 16 31 H 0.10 2.01 8.00 -2.39 -0.02 2.00 16 32 H 0.11 2.00 8.09 -2.39 -0.02 1.98 16 33 H 0.09 1.25 7.79 -2.39 -0.02 1.23 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.09 1.36 8.00 -2.39 -0.02 1.34 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -70.43 326.03 1.32 -69.11 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.11 Total: 19.79 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 3.96 Total: -10.91 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.95 Total: -83.06 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -2.62 Total: -47.31 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 1.82 Total: 52.38 kcal Total: -70.43 1.32 -69.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358061485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.545 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds