Wall clock time and date at job start Mon Mar 30 2020 00:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48489 * 109.47311 * 270.00350 * 3 2 1 5 5 H 1.48499 * 109.46867 * 30.00560 * 3 2 1 6 6 H 1.48499 * 109.46866 * 149.99788 * 3 2 1 7 7 C 1.37873 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00442 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47524 * 180.02562 * 9 7 2 11 11 C 1.42891 * 113.99834 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46956 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46676 * 62.25281 * 12 11 10 14 14 C 1.46853 * 110.99738 * 176.37152 * 13 12 11 15 15 C 1.53111 * 109.47005 * 173.77079 * 14 13 12 16 16 C 1.52731 * 109.29134 * 58.53242 * 15 14 13 17 17 C 1.52734 * 110.12357 * 303.29860 * 16 15 14 18 18 C 1.46840 * 111.00270 * 52.04442 * 13 12 11 19 19 O 1.43398 * 110.12498 * 64.95269 * 16 15 14 20 20 C 1.43974 * 107.00329 * 143.71684 * 19 16 15 21 21 C 1.54476 * 105.16437 * 358.61873 * 20 19 16 22 22 O 1.43987 * 109.85538 * 182.18522 * 16 15 14 23 23 H 0.96998 * 119.99721 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47139 * 60.00051 * 9 7 2 25 25 H 1.09005 * 109.47175 * 300.00041 * 9 7 2 26 26 H 1.09003 * 109.47168 * 60.00179 * 11 10 9 27 27 H 1.08998 * 109.47819 * 299.99613 * 11 10 9 28 28 H 1.09001 * 109.47075 * 302.25260 * 12 11 10 29 29 H 1.08997 * 109.47051 * 182.24763 * 12 11 10 30 30 H 1.09005 * 109.47348 * 53.76965 * 14 13 12 31 31 H 1.08997 * 109.47202 * 293.76582 * 14 13 12 32 32 H 1.09007 * 109.50078 * 298.59180 * 15 14 13 33 33 H 1.09000 * 109.53640 * 178.49857 * 15 14 13 34 34 H 1.09000 * 109.50111 * 176.63664 * 17 16 15 35 35 H 1.08996 * 109.50174 * 296.74318 * 17 16 15 36 36 H 1.09000 * 109.46919 * 306.22345 * 18 13 12 37 37 H 1.09007 * 109.46946 * 66.21733 * 18 13 12 38 38 H 1.09001 * 110.32215 * 117.56833 * 20 19 16 39 39 H 1.08997 * 110.31970 * 239.66597 * 20 19 16 40 40 H 1.09000 * 110.72352 * 96.67831 * 21 20 19 41 41 H 1.08999 * 110.71361 * 219.94765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.3999 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9563 -0.0006 13 7 3.4509 -5.8456 1.2245 14 6 4.4471 -6.9219 1.2998 15 6 5.3631 -6.6862 2.5039 16 6 4.5206 -6.6384 3.7770 17 6 3.4481 -5.5575 3.6571 18 6 2.5931 -5.8288 2.4162 19 8 3.9111 -7.9146 4.0135 20 6 3.9013 -8.1188 5.4387 21 6 4.5902 -6.8693 6.0307 22 8 5.3642 -6.3662 4.9117 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 0.9445 -4.9827 -0.8897 27 1 0.9452 -4.9823 0.8903 28 1 3.2919 -5.8249 -0.8702 29 1 2.1797 -6.9397 -0.0405 30 1 5.0424 -6.9306 0.3867 31 1 3.9393 -7.8798 1.4117 32 1 5.8900 -5.7400 2.3806 33 1 6.0861 -7.4986 2.5764 34 1 2.8160 -5.5721 4.5449 35 1 3.9241 -4.5813 3.5647 36 1 1.8433 -5.0444 2.3131 37 1 2.0973 -6.7939 2.5206 38 1 2.8768 -8.1946 5.8032 39 1 4.4615 -9.0176 5.6962 40 1 3.8500 -6.1349 6.3483 41 1 5.2420 -7.1448 6.8597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385848633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:18 Heat of formation + Delta-G solvation = -129.079509 kcal Electronic energy + Delta-G solvation = -21869.063844 eV Core-core repulsion = 18556.306805 eV Total energy + Delta-G solvation = -3312.757039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00613 -38.26339 -36.29231 -35.09773 -33.06136 -32.37808 -30.97036 -29.63954 -28.04097 -26.54659 -23.88816 -23.47887 -22.89532 -22.25109 -20.91995 -19.63898 -17.20677 -16.71229 -16.37283 -16.18175 -15.84092 -15.51340 -15.10323 -14.61530 -14.37786 -14.29406 -13.84844 -13.63900 -13.29462 -13.06528 -12.83609 -12.48679 -12.26115 -12.02003 -11.75786 -11.54443 -11.34523 -11.18845 -11.05866 -10.85526 -10.75524 -10.64089 -10.39132 -10.29960 -9.93694 -9.53552 -9.04095 -8.74792 -8.10545 -7.99628 -6.06350 -4.07121 3.33840 3.34597 3.38619 3.44839 3.75318 4.06045 4.35440 4.39769 4.54359 4.64259 4.73090 4.91301 5.02793 5.08948 5.21976 5.30288 5.33303 5.37605 5.41339 5.50140 5.56688 5.59213 5.66250 5.78495 5.86562 5.93040 5.99398 6.09371 6.12304 6.22307 6.30585 6.34364 6.91868 7.14432 7.30785 7.32684 7.47807 7.85902 8.21724 8.66373 9.07838 9.57732 11.05371 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.004143 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.651846 B = 6757.455347 C = 7296.951522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.378 6.378 11 C 0.060 3.940 12 C 0.063 3.937 13 N -0.525 5.525 14 C 0.061 3.939 15 C -0.102 4.102 16 C 0.255 3.745 17 C -0.143 4.143 18 C 0.060 3.940 19 O -0.375 6.375 20 C 0.020 3.980 21 C 0.013 3.987 22 O -0.368 6.368 23 H 0.263 0.737 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -17.528 9.640 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.298 6.298 11 C -0.018 4.018 12 C -0.064 4.064 13 N -0.250 5.250 14 C -0.067 4.067 15 C -0.140 4.140 16 C 0.179 3.821 17 C -0.181 4.181 18 C -0.068 4.068 19 O -0.296 6.296 20 C -0.057 4.057 21 C -0.064 4.064 22 O -0.288 6.288 23 H 0.072 0.928 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.348 -16.958 9.454 20.759 hybrid contribution -0.640 0.149 0.324 0.732 sum 6.708 -16.809 9.778 20.571 Atomic orbital electron populations 1.69968 1.06106 1.27030 1.50949 1.24941 0.94944 0.99385 0.95268 0.86353 0.79724 0.82330 0.78202 1.20512 1.21170 1.19584 1.21070 0.94121 0.89322 1.50272 0.91478 1.20183 0.88866 0.83975 0.95071 1.87973 1.34540 1.12237 1.95004 1.22357 0.94009 0.86417 0.98992 1.22119 0.95436 0.95930 0.92928 1.61823 1.16238 1.45052 1.01876 1.21995 0.94329 0.92568 0.97786 1.21584 0.97396 1.04103 0.90949 1.23491 0.87378 0.82933 0.88285 1.22276 0.97547 0.99773 0.98497 1.22043 0.95241 1.00684 0.88814 1.88883 1.81494 1.37445 1.21827 1.23929 1.01495 0.98740 0.81516 1.24265 0.95960 0.94723 0.91420 1.89468 1.41753 1.81720 1.15895 0.92766 0.98000 0.98014 0.94197 0.94440 0.89931 0.94433 0.90131 0.94463 0.88808 0.90422 0.91285 0.88669 0.89085 0.94837 0.90080 0.90137 0.90615 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -15.25 9.43 -34.44 -0.32 -15.57 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.19 5.38 5.69 36.01 0.20 5.59 16 10 O -0.38 -9.28 10.23 -35.23 -0.36 -9.64 16 11 C 0.06 1.13 5.56 37.16 0.21 1.34 16 12 C 0.06 0.99 5.52 -3.82 -0.02 0.97 16 13 N -0.52 -8.33 4.66 -234.57 -1.09 -9.42 16 14 C 0.06 0.81 5.36 -3.79 -0.02 0.79 16 15 C -0.10 -1.32 5.52 -26.81 -0.15 -1.47 16 16 C 0.26 3.38 1.05 -27.01 -0.03 3.35 16 17 C -0.14 -2.02 5.24 -26.81 -0.14 -2.16 16 18 C 0.06 0.92 4.95 -3.80 -0.02 0.90 16 19 O -0.38 -4.77 10.09 -59.27 -0.60 -5.37 16 20 C 0.02 0.18 8.06 37.93 0.31 0.49 16 21 C 0.01 0.12 7.35 37.93 0.28 0.40 16 22 O -0.37 -4.80 11.22 -59.27 -0.67 -5.46 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.69 6.05 -51.93 -0.31 0.37 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.04 0.49 7.88 -51.93 -0.41 0.08 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.87 7.19 -51.93 -0.37 0.49 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.56 5.77 -51.93 -0.30 1.26 16 37 H 0.03 0.49 7.88 -51.93 -0.41 0.08 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.63 7.48 -51.93 -0.39 0.24 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -33.05 325.58 -8.71 -41.76 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.81 Total: -3.55 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.20 Total: -3.86 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.36 Total: -35.93 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.62 Total: -20.46 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.05 -8.71 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385848633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.322 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds