Wall clock time and date at job start Mon Mar 30 2020 00:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.51089 * 2 1 4 4 C 1.53711 * 109.65721 * 239.84760 * 2 1 3 5 5 N 1.47146 * 108.16196 * 292.57091 * 4 2 1 6 6 C 1.34777 * 120.98503 * 129.42892 * 5 4 2 7 7 O 1.21278 * 119.99854 * 359.72591 * 6 5 4 8 8 C 1.50703 * 120.00161 * 179.71898 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99923 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46794 * 89.99626 * 14 12 10 16 16 H 1.48502 * 109.47140 * 209.99610 * 14 12 10 17 17 H 1.48501 * 109.46982 * 329.99723 * 14 12 10 18 18 C 1.47157 * 118.03593 * 309.16049 * 5 4 2 19 19 C 1.53293 * 108.38417 * 50.78160 * 18 5 4 20 20 H 1.09005 * 109.51090 * 67.67641 * 19 18 5 21 21 C 1.53002 * 109.51394 * 187.77266 * 19 18 5 22 22 O 1.42901 * 109.47291 * 184.99828 * 21 19 18 23 23 O 1.42958 * 109.51329 * 120.09965 * 2 1 3 24 24 H 1.09001 * 109.46829 * 299.90195 * 1 2 3 25 25 H 1.09002 * 109.47008 * 59.89338 * 1 2 3 26 26 H 1.08997 * 109.46914 * 179.89684 * 1 2 3 27 27 H 1.08999 * 109.47243 * 180.09944 * 3 2 1 28 28 H 1.08995 * 109.47582 * 300.10158 * 3 2 1 29 29 H 1.09001 * 109.46831 * 60.10260 * 3 2 1 30 30 H 1.08998 * 109.83800 * 172.88946 * 4 2 1 31 31 H 1.09004 * 109.74590 * 52.19544 * 4 2 1 32 32 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 33 33 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 34 34 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 35 35 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 36 36 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 37 37 H 1.08994 * 109.68420 * 170.50704 * 18 5 4 38 38 H 1.08999 * 109.68072 * 291.02333 * 18 5 4 39 39 H 1.08997 * 109.47056 * 305.00788 * 21 19 18 40 40 H 1.09004 * 109.46727 * 65.00369 * 21 19 18 41 41 H 0.96697 * 113.99603 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 6 2.0471 -0.7271 -1.2517 5 7 1.6960 -2.1511 -1.1328 6 6 1.0716 -2.7980 -2.1368 7 8 0.7864 -2.2049 -3.1555 8 6 0.7280 -4.2583 -1.9938 9 6 0.0305 -4.7450 -3.2656 10 6 -0.3125 -6.2055 -3.1229 11 1 -0.0587 -6.7336 -2.2156 12 6 -0.9511 -6.8673 -4.1501 13 7 -1.2500 -8.1420 -4.0257 14 14 -1.3906 -5.9537 -5.7191 15 1 -0.2662 -6.0572 -6.6836 16 1 -2.6113 -6.5532 -6.3157 17 1 -1.6437 -4.5244 -5.4053 18 6 2.0522 -2.8496 0.1125 19 6 1.5397 -2.0204 1.2956 20 1 0.4497 -2.0285 1.3008 21 6 2.0614 -2.6191 2.6034 22 8 1.4905 -1.9175 3.7096 23 8 2.0075 -0.6758 1.1658 24 1 -0.3633 0.5123 0.8909 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3633 -1.0276 -0.0019 27 1 3.1310 1.4415 -0.0018 28 1 1.6766 1.9569 -0.8890 29 1 1.6795 1.9557 0.8909 30 1 3.1297 -0.6204 -1.3207 31 1 1.5788 -0.3066 -2.1416 32 1 0.0637 -4.3934 -1.1403 33 1 1.6412 -4.8328 -1.8380 34 1 -0.8825 -4.1706 -3.4218 35 1 0.6951 -4.6100 -4.1189 36 1 -1.6996 -8.6074 -4.7483 37 1 1.5873 -3.8354 0.1264 38 1 3.1352 -2.9537 0.1782 39 1 1.7831 -3.6715 2.6577 40 1 3.1472 -2.5282 2.6369 41 1 1.7779 -2.2441 4.5732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421931922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:28 Heat of formation + Delta-G solvation = -135.104053 kcal Electronic energy + Delta-G solvation = -21987.120241 eV Core-core repulsion = 18674.101958 eV Total energy + Delta-G solvation = -3313.018283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64019 -38.57726 -36.94876 -34.74258 -34.00666 -33.45783 -31.31856 -30.21139 -27.56772 -27.48987 -25.96401 -24.91689 -22.07552 -21.21000 -19.85219 -18.83280 -17.58448 -17.34918 -16.91210 -16.33383 -15.73468 -15.49471 -15.03436 -14.86113 -14.46293 -14.09705 -13.73893 -13.58243 -13.39683 -12.74406 -12.61856 -12.60806 -12.35325 -12.21650 -12.07529 -11.96934 -11.46697 -11.39294 -11.26307 -10.99740 -10.60623 -10.32606 -10.17080 -10.08635 -10.01749 -9.81249 -9.28871 -9.18693 -8.53875 -8.45275 -6.05559 -4.04511 2.94966 3.01336 3.36159 3.38816 3.42878 3.53590 3.90178 4.48803 4.53024 4.65485 4.73226 4.80704 4.92151 4.98965 5.11225 5.13425 5.19629 5.30046 5.31436 5.43053 5.50381 5.58994 5.66474 5.71656 5.74490 5.79804 5.96631 5.97567 6.01585 6.12149 6.46709 6.63403 7.07325 7.32340 7.37680 7.39266 7.51858 7.75926 8.44220 8.54280 8.96768 9.57527 11.07209 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.004659 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.813809 B = 6008.966473 C = 6809.028869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 C -0.134 4.134 4 C 0.088 3.912 5 N -0.624 5.624 6 C 0.515 3.485 7 O -0.535 6.535 8 C -0.121 4.121 9 C 0.002 3.998 10 C -0.525 4.525 11 H 0.072 0.928 12 C 0.070 3.930 13 N -0.903 5.903 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.261 1.261 18 C 0.082 3.918 19 C 0.074 3.926 20 H 0.076 0.924 21 C 0.086 3.914 22 O -0.565 6.565 23 O -0.361 6.361 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.263 0.737 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 15.303 14.121 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.192 4.192 4 C -0.035 4.035 5 N -0.359 5.359 6 C 0.306 3.694 7 O -0.411 6.411 8 C -0.161 4.161 9 C -0.036 4.036 10 C -0.563 4.563 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.542 5.542 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.042 4.042 19 C 0.015 3.985 20 H 0.094 0.906 21 C 0.008 3.992 22 O -0.370 6.370 23 O -0.280 6.280 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.011 15.880 13.084 22.080 hybrid contribution -0.066 -0.213 -0.521 0.567 sum 7.945 15.666 12.563 21.596 Atomic orbital electron populations 1.22342 0.95064 1.03018 1.02698 1.21966 0.93911 0.92938 0.85244 1.21701 1.01883 0.92778 1.02829 1.22328 1.00404 0.81601 0.99126 1.48239 1.60704 1.10405 1.16595 1.21583 0.75415 0.90594 0.81834 1.90645 1.52766 1.69003 1.28665 1.21708 1.02243 0.88811 1.03348 1.19379 0.95849 0.96659 0.91728 1.21087 1.38645 0.92971 1.03616 0.90942 1.24959 0.95014 0.94665 0.98497 1.69907 1.41802 1.09141 1.33321 0.86805 0.78111 0.81043 0.83661 1.20214 1.21397 1.18564 1.22271 1.01379 0.97004 0.83523 1.22480 0.99667 0.83277 0.93059 0.90618 1.22087 0.97347 0.94572 0.85201 1.86534 1.72230 1.61737 1.16518 1.88012 1.71966 1.24700 1.43346 0.91685 0.91355 0.91935 0.91693 0.90818 0.91431 0.91165 0.88213 0.89641 0.89552 0.95824 0.96244 0.92687 0.87816 0.90540 0.91543 0.92577 0.77384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.10 37.16 0.30 -1.80 16 2 C 0.10 1.16 1.12 -90.25 -0.10 1.06 16 3 C -0.13 -1.24 8.85 37.16 0.33 -0.91 16 4 C 0.09 1.15 5.35 -3.32 -0.02 1.14 16 5 N -0.62 -9.07 2.53 -172.03 -0.43 -9.51 16 6 C 0.52 9.57 7.71 -10.98 -0.08 9.48 16 7 O -0.54 -11.88 15.45 5.56 0.09 -11.79 16 8 C -0.12 -2.35 4.01 -27.88 -0.11 -2.46 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 11 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 13 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 14 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 15 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 17 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 18 C 0.08 0.94 5.83 -3.53 -0.02 0.92 16 19 C 0.07 0.84 2.67 -26.58 -0.07 0.76 16 20 H 0.08 0.95 6.26 -51.93 -0.32 0.62 16 21 C 0.09 0.76 6.71 37.16 0.25 1.01 16 22 O -0.57 -5.49 13.63 -39.71 -0.54 -6.04 16 23 O -0.36 -4.52 9.84 -39.71 -0.39 -4.91 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.85 6.11 -51.93 -0.32 0.53 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.42 7.08 -51.93 -0.37 1.06 16 32 H 0.09 1.52 7.66 -51.93 -0.40 1.12 16 33 H 0.09 1.53 8.02 -51.93 -0.42 1.12 16 34 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 35 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.10 1.11 6.05 -51.93 -0.31 0.80 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 1.79 9.12 45.56 0.42 2.21 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -35.42 326.98 -6.17 -41.59 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.88 Total: -0.98 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.05 Total: -4.11 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.34 Total: -36.55 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.85 Total: -22.74 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.42 -6.17 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421931922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.510 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds