Wall clock time and date at job start Mon Mar 30 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.51089 * 2 1 4 4 C 1.53711 * 109.65721 * 239.84760 * 2 1 3 5 5 N 1.47146 * 108.16196 * 292.57091 * 4 2 1 6 6 C 1.34777 * 120.98503 * 129.42892 * 5 4 2 7 7 O 1.21278 * 119.99854 * 359.72591 * 6 5 4 8 8 C 1.50703 * 120.00161 * 179.71898 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99923 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46794 * 89.99626 * 14 12 10 16 16 H 1.48502 * 109.47140 * 209.99610 * 14 12 10 17 17 H 1.48501 * 109.46982 * 329.99723 * 14 12 10 18 18 C 1.47157 * 118.03593 * 309.16049 * 5 4 2 19 19 C 1.53293 * 108.38417 * 50.78160 * 18 5 4 20 20 H 1.09005 * 109.51090 * 67.67641 * 19 18 5 21 21 C 1.53002 * 109.51394 * 187.77266 * 19 18 5 22 22 O 1.42901 * 109.47291 * 184.99828 * 21 19 18 23 23 O 1.42958 * 109.51329 * 120.09965 * 2 1 3 24 24 H 1.09001 * 109.46829 * 299.90195 * 1 2 3 25 25 H 1.09002 * 109.47008 * 59.89338 * 1 2 3 26 26 H 1.08997 * 109.46914 * 179.89684 * 1 2 3 27 27 H 1.08999 * 109.47243 * 180.09944 * 3 2 1 28 28 H 1.08995 * 109.47582 * 300.10158 * 3 2 1 29 29 H 1.09001 * 109.46831 * 60.10260 * 3 2 1 30 30 H 1.08998 * 109.83800 * 172.88946 * 4 2 1 31 31 H 1.09004 * 109.74590 * 52.19544 * 4 2 1 32 32 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 33 33 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 34 34 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 35 35 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 36 36 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 37 37 H 1.08994 * 109.68420 * 170.50704 * 18 5 4 38 38 H 1.08999 * 109.68072 * 291.02333 * 18 5 4 39 39 H 1.08997 * 109.47056 * 305.00788 * 21 19 18 40 40 H 1.09004 * 109.46727 * 65.00369 * 21 19 18 41 41 H 0.96697 * 113.99603 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 6 2.0471 -0.7271 -1.2517 5 7 1.6960 -2.1511 -1.1328 6 6 1.0716 -2.7980 -2.1368 7 8 0.7864 -2.2049 -3.1555 8 6 0.7280 -4.2583 -1.9938 9 6 0.0305 -4.7450 -3.2656 10 6 -0.3125 -6.2055 -3.1229 11 1 -0.0587 -6.7336 -2.2156 12 6 -0.9511 -6.8673 -4.1501 13 7 -1.2500 -8.1420 -4.0257 14 14 -1.3906 -5.9537 -5.7191 15 1 -0.2662 -6.0572 -6.6836 16 1 -2.6113 -6.5532 -6.3157 17 1 -1.6437 -4.5244 -5.4053 18 6 2.0522 -2.8496 0.1125 19 6 1.5397 -2.0204 1.2956 20 1 0.4497 -2.0285 1.3008 21 6 2.0614 -2.6191 2.6034 22 8 1.4905 -1.9175 3.7096 23 8 2.0075 -0.6758 1.1658 24 1 -0.3633 0.5123 0.8909 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3633 -1.0276 -0.0019 27 1 3.1310 1.4415 -0.0018 28 1 1.6766 1.9569 -0.8890 29 1 1.6795 1.9557 0.8909 30 1 3.1297 -0.6204 -1.3207 31 1 1.5788 -0.3066 -2.1416 32 1 0.0637 -4.3934 -1.1403 33 1 1.6412 -4.8328 -1.8380 34 1 -0.8825 -4.1706 -3.4218 35 1 0.6951 -4.6100 -4.1189 36 1 -1.6996 -8.6074 -4.7483 37 1 1.5873 -3.8354 0.1264 38 1 3.1352 -2.9537 0.1782 39 1 1.7831 -3.6715 2.6577 40 1 3.1472 -2.5282 2.6369 41 1 1.7779 -2.2441 4.5732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421931922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:27 Heat of formation + Delta-G solvation = -161.939989 kcal Electronic energy + Delta-G solvation = -21988.283934 eV Core-core repulsion = 18674.101958 eV Total energy + Delta-G solvation = -3314.181976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74711 -39.85768 -37.66735 -35.93260 -35.62635 -34.78646 -33.29624 -31.12291 -29.00476 -28.42557 -27.10941 -26.26152 -23.11802 -22.83498 -20.95956 -20.08878 -19.20100 -18.29658 -17.97733 -17.84587 -16.89418 -16.75002 -16.29639 -15.91515 -15.84972 -15.45792 -14.98999 -14.78020 -14.62082 -14.35510 -14.08387 -13.63038 -13.48421 -13.20879 -13.11572 -13.01919 -12.92670 -12.84929 -12.35645 -12.11441 -12.04996 -11.99758 -11.79941 -11.57229 -11.41195 -11.15244 -10.85748 -10.78944 -10.74850 -9.59701 -8.32455 -6.35201 1.31965 1.34301 1.48841 1.55349 1.80908 2.33922 2.54713 3.03428 3.16047 3.54473 3.63339 3.83001 3.92411 3.99521 4.12583 4.22383 4.27935 4.31003 4.39105 4.46896 4.52277 4.56744 4.62740 4.70278 4.73503 4.85624 4.87576 4.94742 4.96791 5.13141 5.22496 5.29399 5.39844 5.42459 5.58670 6.17334 6.19980 6.25698 6.70609 6.95551 7.10646 7.30337 8.83057 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.004659 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.813809 B = 6008.966473 C = 6809.028869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 C -0.131 4.131 4 C 0.086 3.914 5 N -0.615 5.615 6 C 0.517 3.483 7 O -0.580 6.580 8 C -0.114 4.114 9 C 0.006 3.994 10 C -0.528 4.528 11 H 0.053 0.947 12 C 0.017 3.983 13 N -0.942 5.942 14 Si 0.935 3.065 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.263 1.263 18 C 0.077 3.923 19 C 0.071 3.929 20 H 0.059 0.941 21 C 0.088 3.912 22 O -0.589 6.589 23 O -0.368 6.368 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.267 0.733 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.574 16.424 15.065 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.061 3.939 3 C -0.188 4.188 4 C -0.036 4.036 5 N -0.348 5.348 6 C 0.308 3.692 7 O -0.459 6.459 8 C -0.154 4.154 9 C -0.032 4.032 10 C -0.566 4.566 11 H 0.071 0.929 12 C -0.181 4.181 13 N -0.582 5.582 14 Si 0.760 3.240 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.188 1.188 18 C -0.045 4.045 19 C 0.012 3.988 20 H 0.077 0.923 21 C 0.010 3.990 22 O -0.398 6.398 23 O -0.288 6.288 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 9.183 17.005 14.094 23.920 hybrid contribution -0.393 -0.574 -0.685 0.977 sum 8.789 16.431 13.409 22.957 Atomic orbital electron populations 1.22323 0.95709 1.01831 1.03020 1.22027 0.93423 0.94065 0.84398 1.21711 1.02418 0.91056 1.03621 1.22485 1.01244 0.80535 0.99380 1.48181 1.58925 1.11172 1.16537 1.21281 0.75686 0.90176 0.82106 1.90626 1.55005 1.69686 1.30631 1.21530 1.02907 0.89925 1.01042 1.19222 0.95478 0.94316 0.94187 1.21391 1.37830 0.94606 1.02728 0.92881 1.25752 0.95269 0.95384 1.01729 1.70012 1.43067 1.10570 1.34590 0.85878 0.78384 0.79576 0.80177 1.19338 1.20326 1.18789 1.22537 1.02886 0.97082 0.82006 1.22569 0.98872 0.82926 0.94389 0.92309 1.22122 0.97927 0.95153 0.83774 1.86469 1.72830 1.62552 1.17941 1.88021 1.72000 1.25308 1.43432 0.91041 0.91327 0.93856 0.90838 0.89686 0.91015 0.89566 0.89673 0.88090 0.87673 0.97365 0.97314 0.92358 0.87032 0.88231 0.89493 0.91194 0.75004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.10 71.98 0.58 -3.43 16 2 C 0.10 2.19 1.12 -10.55 -0.01 2.17 16 3 C -0.13 -2.12 8.85 71.98 0.64 -1.49 16 4 C 0.09 2.12 5.35 86.50 0.46 2.58 16 5 N -0.61 -16.98 2.53 -816.56 -2.06 -19.04 16 6 C 0.52 18.83 7.71 87.66 0.68 19.51 16 7 O -0.58 -25.82 15.45 -3.02 -0.05 -25.87 16 8 C -0.11 -4.32 4.01 29.85 0.12 -4.20 16 9 C 0.01 0.30 3.33 29.85 0.10 0.39 16 10 C -0.53 -30.11 9.66 25.60 0.25 -29.86 16 11 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 12 C 0.02 0.98 5.47 84.65 0.46 1.44 16 13 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 14 Si 0.94 46.63 27.47 68.60 1.88 48.52 16 15 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 18 C 0.08 1.59 5.83 86.35 0.50 2.09 16 19 C 0.07 1.46 2.67 30.69 0.08 1.55 16 20 H 0.06 1.41 6.26 -2.38 -0.01 1.40 16 21 C 0.09 1.31 6.71 71.98 0.48 1.80 16 22 O -0.59 -10.13 13.63 -144.70 -1.97 -12.10 16 23 O -0.37 -8.43 9.84 -144.70 -1.42 -9.85 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 1.17 6.11 -2.39 -0.01 1.15 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.38 7.08 -2.39 -0.02 2.37 16 32 H 0.10 3.47 7.66 -2.39 -0.02 3.45 16 33 H 0.11 3.55 8.02 -2.39 -0.02 3.53 16 34 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 35 H 0.01 0.44 7.53 -2.39 -0.02 0.42 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.11 2.11 6.05 -2.39 -0.01 2.10 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.40 2.83 9.12 -74.06 -0.68 2.15 16 Total: -1.00 -76.09 326.98 1.31 -74.78 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.29 Total: 9.20 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.34 Total: -7.45 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -1.76 Total: -77.24 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -3.44 Total: -47.82 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.88 Total: 48.52 kcal Total: -76.09 1.31 -74.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421931922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.161 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds