Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00584 * 2 1 4 4 C 1.52994 * 109.47367 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47243 * 65.00040 * 4 3 2 6 6 C 1.37095 * 119.99799 * 269.99825 * 5 4 3 7 7 H 1.08003 * 119.99845 * 142.69819 * 6 5 4 8 8 C 1.38942 * 120.00357 * 322.69863 * 6 5 4 9 9 N 1.31411 * 120.00225 * 157.18672 * 8 6 5 10 10 Si 1.86796 * 120.00168 * 337.18299 * 8 6 5 11 11 H 1.48501 * 109.47254 * 95.33801 * 10 8 6 12 12 H 1.48500 * 109.47727 * 215.33940 * 10 8 6 13 13 H 1.48501 * 109.46920 * 335.34054 * 10 8 6 14 14 C 1.34779 * 120.00018 * 90.00105 * 5 4 3 15 15 O 1.21293 * 119.99997 * 355.11120 * 14 5 4 16 16 C 1.50695 * 119.99795 * 175.38734 * 14 5 4 17 17 C 1.53007 * 109.46896 * 174.20080 * 16 14 5 18 18 C 1.52999 * 109.47063 * 296.94290 * 17 16 14 19 19 O 1.42902 * 109.46848 * 56.94442 * 17 16 14 20 20 C 1.53000 * 109.47089 * 176.94127 * 17 16 14 21 21 C 1.53002 * 117.50156 * 253.22816 * 20 17 16 22 22 C 1.52995 * 117.50010 * 184.60277 * 20 17 16 23 23 H 1.08997 * 109.47486 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46951 * 300.00449 * 1 2 3 25 25 H 1.09003 * 109.46911 * 59.99656 * 1 2 3 26 26 H 1.09011 * 109.46999 * 59.99707 * 3 2 1 27 27 H 1.09005 * 109.47152 * 300.00130 * 3 2 1 28 28 H 1.09002 * 109.47149 * 305.00169 * 4 3 2 29 29 H 1.09007 * 109.47140 * 185.00545 * 4 3 2 30 30 H 0.97001 * 120.00761 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.47331 * 294.19769 * 16 14 5 32 32 H 1.08996 * 109.47218 * 54.20051 * 16 14 5 33 33 H 1.08998 * 109.46839 * 65.86674 * 18 17 16 34 34 H 1.09001 * 109.47123 * 185.86793 * 18 17 16 35 35 H 1.09001 * 109.47122 * 305.86474 * 18 17 16 36 36 H 0.96696 * 114.00340 * 59.99990 * 19 17 16 37 37 H 1.09004 * 115.54890 * 38.92940 * 20 17 16 38 38 H 1.09000 * 117.49502 * 359.97438 * 21 20 17 39 39 H 1.08996 * 117.50008 * 145.01770 * 21 20 17 40 40 H 1.09002 * 117.50204 * 214.97886 * 22 20 17 41 41 H 1.09001 * 117.49659 * 0.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.0980 -0.7993 -1.3344 7 1 3.8275 -1.3105 -2.2466 8 6 4.5688 -1.5230 -0.2458 9 7 4.2802 -2.7999 -0.1313 10 14 5.6120 -0.6810 1.0549 11 1 4.7451 -0.2455 2.1792 12 1 6.6365 -1.6305 1.5589 13 1 6.2838 0.5026 0.4607 14 6 4.2635 1.3327 -2.3200 15 8 4.0720 2.5296 -2.2750 16 6 4.8162 0.7046 -3.5733 17 6 4.9165 1.7636 -4.6730 18 6 3.5170 2.2803 -5.0126 19 8 5.7272 2.8485 -4.2170 20 6 5.5483 1.1444 -5.9213 21 6 6.9894 1.5374 -6.2528 22 6 5.8354 2.0733 -7.1027 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6888 1.8463 -0.8900 28 1 3.8508 0.5683 0.8427 29 1 3.9786 2.1764 0.0903 30 1 4.6085 -3.3051 0.6289 31 1 5.8067 0.2976 -3.3695 32 1 4.1542 -0.0972 -3.9003 33 1 3.1082 2.8131 -4.1540 34 1 3.5763 2.9566 -5.8654 35 1 2.8693 1.4392 -5.2603 36 1 6.6301 2.5936 -3.9832 37 1 5.2402 0.1235 -6.1471 38 1 7.4871 2.2375 -5.5818 39 1 7.6295 0.7750 -6.6966 40 1 5.7165 1.6634 -8.1057 41 1 5.5745 3.1256 -6.9904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = -89.922363 kcal Electronic energy + Delta-G solvation = -22496.016329 eV Core-core repulsion = 19184.957272 eV Total energy + Delta-G solvation = -3311.059058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.54017 -38.21726 -36.90743 -34.94360 -34.34467 -31.92065 -31.55150 -29.57943 -27.19640 -25.75023 -24.59507 -23.41360 -22.19920 -22.02871 -19.50239 -18.86935 -17.19498 -16.61098 -16.12616 -15.74975 -15.40152 -15.25432 -14.68752 -14.49667 -14.20510 -13.78903 -13.47140 -13.27844 -12.57317 -12.52308 -12.41258 -11.91659 -11.82657 -11.61788 -11.44929 -11.32814 -11.16861 -10.88598 -10.80379 -10.70247 -10.57609 -10.32656 -10.08529 -9.86699 -9.78210 -9.41230 -9.02803 -8.99738 -8.34334 -7.70172 -6.37054 -3.91848 3.10281 3.25573 3.31631 3.82444 3.89730 4.20345 4.31535 4.50307 4.75076 4.89744 5.08329 5.09298 5.12906 5.40734 5.64118 5.66216 5.71444 5.73668 5.76098 5.85011 5.90569 5.94729 6.01324 6.08820 6.17080 6.18378 6.24114 6.26795 6.35394 6.42703 6.49559 6.53135 6.65774 6.86592 7.43087 7.86828 8.17806 8.18556 8.34538 9.09195 9.47628 9.80554 10.74506 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.006581 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.567754 B = 4253.895950 C = 4898.377306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.056 3.944 4 C 0.103 3.897 5 N -0.460 5.460 6 C -0.328 4.328 7 H 0.099 0.901 8 C 0.074 3.926 9 N -0.857 5.857 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.264 1.264 14 C 0.479 3.521 15 O -0.581 6.581 16 C -0.141 4.141 17 C 0.179 3.821 18 C -0.136 4.136 19 O -0.538 6.538 20 C -0.179 4.179 21 C -0.181 4.181 22 C -0.171 4.171 23 H 0.080 0.920 24 H 0.028 0.972 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.272 0.728 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.362 0.638 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 5.572 -6.260 8.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.022 4.022 4 C -0.021 4.021 5 N -0.181 5.181 6 C -0.455 4.455 7 H 0.117 0.883 8 C -0.133 4.133 9 N -0.492 5.492 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.188 1.188 14 C 0.269 3.731 15 O -0.465 6.465 16 C -0.181 4.181 17 C 0.137 3.863 18 C -0.193 4.193 19 O -0.343 6.343 20 C -0.198 4.198 21 C -0.218 4.218 22 C -0.208 4.208 23 H 0.099 0.901 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.209 0.791 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.556 6.130 -6.234 8.761 hybrid contribution 0.781 -0.217 0.948 1.247 sum 0.224 5.913 -5.286 7.935 Atomic orbital electron populations 1.22649 0.83204 1.02010 0.98625 1.88238 1.17509 1.26576 1.94975 1.22854 0.95106 0.85168 0.99081 1.21688 0.92178 0.98706 0.89499 1.43688 1.57956 1.06925 1.09500 1.18886 1.44430 0.79063 1.03164 0.88316 1.25220 0.95915 0.95032 0.97148 1.69788 1.40794 1.08497 1.30105 0.87062 0.80925 0.80046 0.82141 1.20266 1.21664 1.18823 1.20245 0.80710 0.86273 0.85860 1.90555 1.57330 1.14890 1.83745 1.22060 1.03288 0.98750 0.94018 1.20379 0.91236 0.85824 0.88837 1.21766 0.93937 1.01094 1.02548 1.86662 1.25841 1.34687 1.87083 1.23172 0.98794 1.00090 0.97742 1.22932 0.91192 1.03711 1.03923 1.22844 1.03095 0.99892 0.94972 0.90140 0.95304 0.94990 0.94248 0.93334 0.91053 0.90038 0.91817 0.89460 0.89135 0.89694 0.93112 0.92271 0.79097 0.87356 0.88497 0.89119 0.89378 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -7.81 10.18 -35.23 -0.36 -8.17 16 3 C 0.06 1.14 6.28 37.15 0.23 1.37 16 4 C 0.10 2.32 4.62 -4.05 -0.02 2.30 16 5 N -0.46 -11.03 2.16 -114.82 -0.25 -11.28 16 6 C -0.33 -8.53 8.55 -14.94 -0.13 -8.66 16 7 H 0.10 2.70 7.07 -52.48 -0.37 2.33 16 8 C 0.07 1.97 5.30 -17.47 -0.09 1.88 16 9 N -0.86 -23.90 13.96 55.50 0.77 -23.13 16 10 Si 0.87 20.65 25.07 -169.99 -4.26 16.39 16 11 H -0.28 -6.40 6.66 56.52 0.38 -6.02 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.48 10.86 7.15 -10.99 -0.08 10.79 16 15 O -0.58 -13.95 12.82 -15.14 -0.19 -14.15 16 16 C -0.14 -2.68 3.84 -27.88 -0.11 -2.79 16 17 C 0.18 2.97 0.78 -90.62 -0.07 2.89 16 18 C -0.14 -2.29 8.44 37.16 0.31 -1.98 16 19 O -0.54 -9.47 10.77 -55.92 -0.60 -10.07 16 20 C -0.18 -2.45 5.08 -90.62 -0.46 -2.91 16 21 C -0.18 -2.15 9.77 -26.73 -0.26 -2.41 16 22 C -0.17 -2.06 9.59 -26.73 -0.26 -2.32 16 23 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.68 3.27 -51.93 -0.17 1.51 16 29 H 0.08 1.76 7.50 -51.93 -0.39 1.37 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 32 H 0.09 1.72 7.27 -51.93 -0.38 1.34 16 33 H 0.08 1.67 6.12 -51.93 -0.32 1.36 16 34 H 0.05 0.77 7.43 -51.93 -0.39 0.38 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.36 5.38 7.39 45.56 0.34 5.72 16 37 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.10 1.12 6.32 -51.93 -0.33 0.80 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.23 7.88 -51.93 -0.41 0.82 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -30.51 326.21 -5.59 -36.10 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.80 Total: 9.57 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 0.19 Total: -0.19 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.53 Total: -34.41 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.15 Total: -32.38 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.26 Total: 16.39 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.51 -5.59 -36.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.820 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds