Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00584 * 2 1 4 4 C 1.52994 * 109.47367 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47243 * 65.00040 * 4 3 2 6 6 C 1.37095 * 119.99799 * 269.99825 * 5 4 3 7 7 H 1.08003 * 119.99845 * 142.69819 * 6 5 4 8 8 C 1.38942 * 120.00357 * 322.69863 * 6 5 4 9 9 N 1.31411 * 120.00225 * 157.18672 * 8 6 5 10 10 Si 1.86796 * 120.00168 * 337.18299 * 8 6 5 11 11 H 1.48501 * 109.47254 * 95.33801 * 10 8 6 12 12 H 1.48500 * 109.47727 * 215.33940 * 10 8 6 13 13 H 1.48501 * 109.46920 * 335.34054 * 10 8 6 14 14 C 1.34779 * 120.00018 * 90.00105 * 5 4 3 15 15 O 1.21293 * 119.99997 * 355.11120 * 14 5 4 16 16 C 1.50695 * 119.99795 * 175.38734 * 14 5 4 17 17 C 1.53007 * 109.46896 * 174.20080 * 16 14 5 18 18 C 1.52999 * 109.47063 * 296.94290 * 17 16 14 19 19 O 1.42902 * 109.46848 * 56.94442 * 17 16 14 20 20 C 1.53000 * 109.47089 * 176.94127 * 17 16 14 21 21 C 1.53002 * 117.50156 * 253.22816 * 20 17 16 22 22 C 1.52995 * 117.50010 * 184.60277 * 20 17 16 23 23 H 1.08997 * 109.47486 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46951 * 300.00449 * 1 2 3 25 25 H 1.09003 * 109.46911 * 59.99656 * 1 2 3 26 26 H 1.09011 * 109.46999 * 59.99707 * 3 2 1 27 27 H 1.09005 * 109.47152 * 300.00130 * 3 2 1 28 28 H 1.09002 * 109.47149 * 305.00169 * 4 3 2 29 29 H 1.09007 * 109.47140 * 185.00545 * 4 3 2 30 30 H 0.97001 * 120.00761 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.47331 * 294.19769 * 16 14 5 32 32 H 1.08996 * 109.47218 * 54.20051 * 16 14 5 33 33 H 1.08998 * 109.46839 * 65.86674 * 18 17 16 34 34 H 1.09001 * 109.47123 * 185.86793 * 18 17 16 35 35 H 1.09001 * 109.47122 * 305.86474 * 18 17 16 36 36 H 0.96696 * 114.00340 * 59.99990 * 19 17 16 37 37 H 1.09004 * 115.54890 * 38.92940 * 20 17 16 38 38 H 1.09000 * 117.49502 * 359.97438 * 21 20 17 39 39 H 1.08996 * 117.50008 * 145.01770 * 21 20 17 40 40 H 1.09002 * 117.50204 * 214.97886 * 22 20 17 41 41 H 1.09001 * 117.49659 * 0.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.0980 -0.7993 -1.3344 7 1 3.8275 -1.3105 -2.2466 8 6 4.5688 -1.5230 -0.2458 9 7 4.2802 -2.7999 -0.1313 10 14 5.6120 -0.6810 1.0549 11 1 4.7451 -0.2455 2.1792 12 1 6.6365 -1.6305 1.5589 13 1 6.2838 0.5026 0.4607 14 6 4.2635 1.3327 -2.3200 15 8 4.0720 2.5296 -2.2750 16 6 4.8162 0.7046 -3.5733 17 6 4.9165 1.7636 -4.6730 18 6 3.5170 2.2803 -5.0126 19 8 5.7272 2.8485 -4.2170 20 6 5.5483 1.1444 -5.9213 21 6 6.9894 1.5374 -6.2528 22 6 5.8354 2.0733 -7.1027 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6888 1.8463 -0.8900 28 1 3.8508 0.5683 0.8427 29 1 3.9786 2.1764 0.0903 30 1 4.6085 -3.3051 0.6289 31 1 5.8067 0.2976 -3.3695 32 1 4.1542 -0.0972 -3.9003 33 1 3.1082 2.8131 -4.1540 34 1 3.5763 2.9566 -5.8654 35 1 2.8693 1.4392 -5.2603 36 1 6.6301 2.5936 -3.9832 37 1 5.2402 0.1235 -6.1471 38 1 7.4871 2.2375 -5.5818 39 1 7.6295 0.7750 -6.6966 40 1 5.7165 1.6634 -8.1057 41 1 5.5745 3.1256 -6.9904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = -110.190184 kcal Electronic energy + Delta-G solvation = -22496.895208 eV Core-core repulsion = 19184.957272 eV Total energy + Delta-G solvation = -3311.937936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.11112 -39.67696 -38.48192 -36.62085 -35.72135 -33.89275 -33.02756 -31.20299 -28.70418 -27.23772 -26.48718 -24.79081 -23.60021 -23.09963 -20.82996 -20.67886 -18.90243 -18.19429 -17.61901 -17.43671 -16.98031 -16.59487 -16.38929 -16.06524 -15.68357 -15.28612 -15.18076 -14.75890 -14.36589 -14.14663 -13.69120 -13.52339 -13.19736 -13.18141 -13.03951 -12.70890 -12.66499 -12.44860 -12.35911 -12.21839 -11.96373 -11.80031 -11.68397 -11.33149 -11.02725 -10.89342 -10.72214 -10.54377 -10.12685 -9.63879 -8.41026 -5.96890 1.21782 1.33032 1.42736 2.00485 2.25194 2.60291 2.92566 2.93808 3.16127 3.47837 3.77311 3.92491 4.05921 4.10289 4.16453 4.19927 4.36214 4.40949 4.44264 4.52035 4.54364 4.56740 4.68859 4.79440 4.82253 4.82785 4.83953 4.94169 5.01274 5.03856 5.20603 5.30745 5.34316 5.44807 5.52753 6.14598 6.33578 6.41812 6.95058 7.09393 7.54954 7.91298 8.74006 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.006581 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.567754 B = 4253.895950 C = 4898.377306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.061 3.939 4 C 0.094 3.906 5 N -0.471 5.471 6 C -0.319 4.319 7 H 0.076 0.924 8 C 0.036 3.964 9 N -0.895 5.895 10 Si 0.920 3.080 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.477 3.523 15 O -0.593 6.593 16 C -0.137 4.137 17 C 0.183 3.817 18 C -0.134 4.134 19 O -0.554 6.554 20 C -0.193 4.193 21 C -0.172 4.172 22 C -0.161 4.161 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.274 0.726 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.373 0.627 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 6.399 -6.768 9.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.016 4.016 4 C -0.029 4.029 5 N -0.193 5.193 6 C -0.447 4.447 7 H 0.094 0.906 8 C -0.168 4.168 9 N -0.533 5.533 10 Si 0.747 3.253 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.190 1.190 14 C 0.267 3.733 15 O -0.478 6.478 16 C -0.177 4.177 17 C 0.142 3.858 18 C -0.191 4.191 19 O -0.360 6.360 20 C -0.211 4.211 21 C -0.209 4.209 22 C -0.198 4.198 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.221 0.779 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.141 6.973 -6.742 9.700 hybrid contribution 0.581 -0.420 1.058 1.278 sum 0.440 6.553 -5.684 8.686 Atomic orbital electron populations 1.22850 0.80658 1.03049 1.00327 1.88165 1.20460 1.27522 1.95309 1.22782 0.93582 0.85006 1.00263 1.21809 0.94035 0.98556 0.88543 1.43798 1.58789 1.06304 1.10441 1.18687 1.43747 0.79916 1.02309 0.90641 1.25705 0.96701 0.95403 0.98945 1.69857 1.42363 1.09768 1.31280 0.86254 0.79614 0.79032 0.80393 1.19374 1.21304 1.18955 1.20837 0.79851 0.86175 0.86403 1.90545 1.57608 1.15526 1.84092 1.22097 1.02925 0.99373 0.93276 1.20317 0.91383 0.84924 0.89199 1.21728 0.94271 1.01417 1.01701 1.86631 1.26749 1.35312 1.87340 1.22986 1.00469 1.00547 0.97133 1.23045 0.90548 1.03827 1.03487 1.22897 1.02476 0.99111 0.95299 0.89547 0.92693 0.94067 0.90982 0.94030 0.92002 0.89384 0.91578 0.89142 0.89425 0.92901 0.91568 0.91419 0.77905 0.86839 0.88350 0.87441 0.87402 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.14 10.18 -148.98 -1.52 -18.66 16 3 C 0.06 2.43 6.28 71.98 0.45 2.89 16 4 C 0.09 4.16 4.62 86.38 0.40 4.56 16 5 N -0.47 -22.64 2.16 -635.55 -1.37 -24.01 16 6 C -0.32 -16.76 8.55 84.04 0.72 -16.04 16 7 H 0.08 4.25 7.07 -2.91 -0.02 4.23 16 8 C 0.04 1.94 5.30 84.92 0.45 2.39 16 9 N -0.90 -50.54 13.96 21.66 0.30 -50.24 16 10 Si 0.92 42.39 25.07 68.60 1.72 44.11 16 11 H -0.27 -11.86 6.66 99.48 0.66 -11.20 16 12 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 C 0.48 21.58 7.15 87.66 0.63 22.21 16 15 O -0.59 -28.38 12.82 16.71 0.21 -28.16 16 16 C -0.14 -5.17 3.84 29.85 0.11 -5.06 16 17 C 0.18 5.90 0.78 -10.79 -0.01 5.89 16 18 C -0.13 -4.42 8.44 71.98 0.61 -3.81 16 19 O -0.55 -18.90 10.77 -129.20 -1.39 -20.29 16 20 C -0.19 -4.88 5.08 -10.79 -0.05 -4.94 16 21 C -0.17 -3.64 9.77 30.60 0.30 -3.34 16 22 C -0.16 -3.45 9.59 30.59 0.29 -3.16 16 23 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.06 2.85 3.27 -2.39 -0.01 2.85 16 29 H 0.09 3.72 7.50 -2.38 -0.02 3.70 16 30 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.09 3.36 7.27 -2.39 -0.02 3.34 16 33 H 0.05 2.08 6.12 -2.39 -0.01 2.06 16 34 H 0.07 1.93 7.43 -2.39 -0.02 1.91 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.37 10.61 7.39 -74.06 -0.55 10.06 16 37 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.10 2.05 6.32 -2.39 -0.02 2.04 16 39 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.09 2.06 7.88 -2.39 -0.02 2.04 16 Total: -1.00 -64.82 326.21 3.54 -61.28 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.44 Total: 32.26 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.15 Total: 3.71 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.07 Total: -74.25 kcal Atomic # 8 Polarization: -64.42 SS G_CDS: -2.69 Total: -67.11 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.72 Total: 44.11 kcal Total: -64.82 3.54 -61.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.915 kcal (2) G-P(sol) polarization free energy of solvation -64.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds