Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99749 * 2 1 4 4 C 1.53003 * 109.46910 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47134 * 65.00367 * 4 3 2 6 6 C 1.37101 * 119.99993 * 264.47063 * 5 4 3 7 7 H 1.07996 * 119.99718 * 138.26327 * 6 5 4 8 8 C 1.38949 * 119.99822 * 318.26649 * 6 5 4 9 9 N 1.31412 * 119.99675 * 341.89074 * 8 6 5 10 10 Si 1.86797 * 120.00110 * 161.89355 * 8 6 5 11 11 H 1.48504 * 109.47024 * 59.99927 * 10 8 6 12 12 H 1.48500 * 109.47057 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47251 * 299.99955 * 10 8 6 14 14 C 1.34777 * 120.00111 * 84.46453 * 5 4 3 15 15 O 1.21298 * 120.00017 * 0.02562 * 14 5 4 16 16 C 1.50698 * 119.99969 * 180.02562 * 14 5 4 17 17 C 1.53003 * 109.47199 * 180.02562 * 16 14 5 18 18 C 1.53008 * 109.46985 * 59.99941 * 17 16 14 19 19 O 1.42901 * 109.47191 * 300.00070 * 17 16 14 20 20 C 1.52995 * 109.47513 * 179.97438 * 17 16 14 21 21 C 1.53001 * 117.51631 * 111.28185 * 20 17 16 22 22 C 1.52998 * 117.50175 * 179.91359 * 20 17 16 23 23 H 1.09003 * 109.47348 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47473 * 299.99946 * 1 2 3 25 25 H 1.08998 * 109.47382 * 59.99851 * 1 2 3 26 26 H 1.09003 * 109.46937 * 60.00199 * 3 2 1 27 27 H 1.08998 * 109.47661 * 300.00420 * 3 2 1 28 28 H 1.08996 * 109.47273 * 305.00365 * 4 3 2 29 29 H 1.09004 * 109.46809 * 185.00317 * 4 3 2 30 30 H 0.97005 * 119.99534 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47054 * 60.00619 * 16 14 5 32 32 H 1.08997 * 109.47277 * 300.00050 * 16 14 5 33 33 H 1.08999 * 109.46904 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.47025 * 300.00030 * 18 17 16 35 35 H 1.08991 * 109.47234 * 59.99933 * 18 17 16 36 36 H 0.96693 * 114.00021 * 299.99979 * 19 17 16 37 37 H 1.09004 * 115.55017 * 325.58711 * 20 17 16 38 38 H 1.08998 * 117.49655 * 214.97132 * 21 20 17 39 39 H 1.08994 * 117.50188 * 359.97438 * 21 20 17 40 40 H 1.09002 * 117.49897 * 359.97438 * 22 20 17 41 41 H 1.09003 * 117.49649 * 144.97435 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.2071 -0.7864 -1.3024 7 1 3.8793 -1.3579 -2.1581 8 6 4.8624 -1.4198 -0.2535 9 7 5.5675 -0.7145 0.6022 10 14 4.7411 -3.2738 -0.0600 11 1 5.2843 -3.9347 -1.2738 12 1 5.5244 -3.6998 1.1275 13 1 3.3188 -3.6607 0.1198 14 6 4.1559 1.3207 -2.3517 15 8 3.9523 2.5156 -2.3061 16 6 4.6092 0.6822 -3.6393 17 6 4.7342 1.7542 -4.7238 18 6 5.7578 2.8044 -4.2873 19 8 3.4652 2.3801 -4.9235 20 6 5.1951 1.1061 -6.0309 21 6 4.1928 1.0538 -7.1857 22 6 5.3790 2.0183 -7.2453 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 3.8507 0.5685 0.8426 29 1 3.9783 2.1766 0.0903 30 1 6.0247 -1.1567 1.3347 31 1 3.8802 -0.0662 -3.9501 32 1 5.5774 0.2052 -3.4871 33 1 5.8465 3.5683 -5.0597 34 1 5.4299 3.2662 -3.3560 35 1 6.7257 2.3270 -4.1349 36 1 2.7665 1.7725 -5.2021 37 1 5.8827 0.2672 -5.9228 38 1 4.2211 0.1805 -7.8374 39 1 3.2047 1.4807 -7.0143 40 1 5.1713 3.0802 -7.1132 41 1 6.1879 1.7798 -7.9360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = -118.882345 kcal Electronic energy + Delta-G solvation = -22428.751650 eV Core-core repulsion = 19116.436793 eV Total energy + Delta-G solvation = -3312.314857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98222 -39.56572 -38.43445 -36.54425 -35.74322 -33.47309 -32.93696 -31.06965 -28.61467 -27.24980 -26.41638 -24.71835 -23.28724 -23.07313 -20.90003 -20.71598 -18.79839 -17.98373 -17.45101 -17.16139 -16.95718 -16.57705 -16.18867 -15.98891 -15.78476 -15.31960 -15.15991 -14.60267 -14.23341 -13.61604 -13.57675 -13.40511 -13.13041 -13.04186 -12.83691 -12.69533 -12.53478 -12.37643 -12.36656 -12.15896 -12.09998 -11.84778 -11.70021 -11.32208 -11.00322 -10.89467 -10.67074 -10.53644 -10.01283 -9.30146 -8.21458 -5.98014 1.45420 1.51735 1.58630 2.15589 2.39533 2.86880 2.97500 3.03979 3.21828 3.50168 3.81763 3.95985 4.08860 4.20525 4.25775 4.34568 4.40985 4.52341 4.54157 4.55332 4.63083 4.68263 4.79444 4.82105 4.86610 4.92254 4.94406 5.02896 5.07727 5.21722 5.32273 5.34327 5.34960 5.54490 5.58363 6.15064 6.41092 6.49925 6.95883 7.25024 7.72850 8.15906 8.82922 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.006520 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.982309 B = 4293.267152 C = 4975.995426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.065 3.935 4 C 0.121 3.879 5 N -0.448 5.448 6 C -0.331 4.331 7 H 0.086 0.914 8 C 0.007 3.993 9 N -0.899 5.899 10 Si 0.975 3.025 11 H -0.261 1.261 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.466 3.534 15 O -0.610 6.610 16 C -0.132 4.132 17 C 0.185 3.815 18 C -0.140 4.140 19 O -0.557 6.557 20 C -0.193 4.193 21 C -0.168 4.168 22 C -0.164 4.164 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.268 0.732 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.373 0.627 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 -0.715 -9.178 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.012 4.012 4 C -0.003 4.003 5 N -0.167 5.167 6 C -0.459 4.459 7 H 0.104 0.896 8 C -0.195 4.195 9 N -0.537 5.537 10 Si 0.799 3.201 11 H -0.186 1.186 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.257 3.743 15 O -0.497 6.497 16 C -0.172 4.172 17 C 0.143 3.857 18 C -0.197 4.197 19 O -0.364 6.364 20 C -0.211 4.211 21 C -0.205 4.205 22 C -0.201 4.201 23 H 0.112 0.888 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.221 0.779 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.622 0.195 -8.784 9.503 hybrid contribution -0.393 -1.075 0.545 1.268 sum -4.014 -0.880 -8.239 9.207 Atomic orbital electron populations 1.22884 0.80652 1.03327 1.00239 1.88058 1.20465 1.27809 1.95305 1.22805 0.94625 0.84520 0.99285 1.21209 0.91183 0.97350 0.90557 1.43505 1.57698 1.07474 1.07987 1.19390 1.36267 0.82638 1.07630 0.89598 1.26086 0.93345 1.03580 0.96516 1.70031 1.28863 1.38271 1.16563 0.85282 0.78217 0.78593 0.78005 1.18573 1.21219 1.19853 1.20978 0.79947 0.86288 0.87135 1.90474 1.56960 1.16030 1.86197 1.22013 1.03272 0.98958 0.92941 1.20289 0.84094 0.90837 0.90430 1.21839 0.96980 0.98642 1.02287 1.86628 1.19680 1.39322 1.90754 1.22994 1.05228 1.03067 0.89847 1.23042 0.95101 1.02232 1.00112 1.22901 1.00917 0.96818 0.99479 0.88754 0.93081 0.94217 0.91924 0.94976 0.89852 0.92854 0.92266 0.89415 0.89359 0.92068 0.92310 0.91673 0.77879 0.86745 0.87200 0.88329 0.89579 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.86 10.44 -148.98 -1.56 -18.42 16 3 C 0.07 2.77 6.24 71.98 0.45 3.22 16 4 C 0.12 6.02 5.27 86.38 0.45 6.47 16 5 N -0.45 -22.86 2.45 -635.53 -1.56 -24.42 16 6 C -0.33 -16.94 8.29 84.04 0.70 -16.24 16 7 H 0.09 4.21 7.21 -2.91 -0.02 4.19 16 8 C 0.01 0.36 4.95 84.93 0.42 0.78 16 9 N -0.90 -48.91 11.66 21.66 0.25 -48.66 16 10 Si 0.97 40.71 29.59 68.60 2.03 42.74 16 11 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 12 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 14 C 0.47 22.66 7.15 87.66 0.63 23.29 16 15 O -0.61 -31.93 12.63 14.38 0.18 -31.75 16 16 C -0.13 -5.18 3.66 29.85 0.11 -5.07 16 17 C 0.18 6.29 0.79 -10.79 -0.01 6.28 16 18 C -0.14 -5.13 8.36 71.98 0.60 -4.53 16 19 O -0.56 -19.81 11.03 -131.52 -1.45 -21.26 16 20 C -0.19 -5.04 5.15 -10.80 -0.06 -5.10 16 21 C -0.17 -3.57 9.74 30.60 0.30 -3.27 16 22 C -0.16 -3.68 9.67 30.60 0.30 -3.38 16 23 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 4.46 5.81 -2.39 -0.01 4.45 16 29 H 0.05 2.72 7.59 -2.38 -0.02 2.70 16 30 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 31 H 0.09 3.22 7.71 -2.39 -0.02 3.20 16 32 H 0.09 3.53 8.10 -2.39 -0.02 3.51 16 33 H 0.06 2.00 7.29 -2.39 -0.02 1.99 16 34 H 0.06 2.61 5.51 -2.39 -0.01 2.60 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.37 10.79 7.56 -74.06 -0.56 10.23 16 37 H 0.11 2.85 8.11 -2.39 -0.02 2.83 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 2.08 6.38 -2.39 -0.02 2.07 16 40 H 0.09 2.12 7.61 -2.39 -0.02 2.10 16 41 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.68 331.74 3.49 -61.18 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.46 Total: 36.12 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.14 Total: 4.46 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.31 Total: -73.08 kcal Atomic # 8 Polarization: -68.60 SS G_CDS: -2.83 Total: -71.43 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -64.68 3.49 -61.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.698 kcal (2) G-P(sol) polarization free energy of solvation -64.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds