Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47174 * 2 1 4 4 H 1.09006 * 109.82321 * 305.88787 * 3 2 1 5 5 C 1.54386 * 109.83169 * 185.00314 * 3 2 1 6 6 C 1.55300 * 102.25449 * 219.13021 * 5 3 2 7 7 C 1.54948 * 100.93935 * 34.13017 * 6 5 3 8 8 H 1.09005 * 110.30460 * 82.57378 * 7 6 5 9 9 C 1.50700 * 110.30986 * 204.63685 * 7 6 5 10 10 O 1.21298 * 119.99862 * 113.61303 * 9 7 6 11 11 N 1.34774 * 120.00260 * 293.61535 * 9 7 6 12 12 C 1.37092 * 119.99989 * 0.02562 * 11 9 7 13 13 H 1.07996 * 120.00440 * 41.07262 * 12 11 9 14 14 C 1.38960 * 119.99864 * 221.35558 * 12 11 9 15 15 N 1.31408 * 119.99699 * 17.29353 * 14 12 11 16 16 Si 1.86800 * 119.99902 * 197.29977 * 14 12 11 17 17 H 1.48494 * 109.47181 * 89.99841 * 16 14 12 18 18 H 1.48503 * 109.46703 * 209.99929 * 16 14 12 19 19 H 1.48498 * 109.47008 * 329.99464 * 16 14 12 20 20 C 1.46503 * 119.99798 * 179.97438 * 11 9 7 21 21 C 1.53002 * 109.47167 * 266.11186 * 20 11 9 22 22 O 1.42896 * 109.46748 * 65.00787 * 21 20 11 23 23 C 1.42898 * 113.99882 * 179.97438 * 22 21 20 24 24 O 1.43369 * 109.75207 * 66.89165 * 3 2 1 25 25 H 1.08993 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46715 * 299.99591 * 1 2 3 27 27 H 1.08991 * 109.47297 * 59.99367 * 1 2 3 28 28 H 1.09000 * 109.46715 * 240.00409 * 2 1 3 29 29 H 1.08998 * 109.47666 * 120.00483 * 2 1 3 30 30 H 1.09004 * 110.84566 * 100.94049 * 5 3 2 31 31 H 1.09000 * 111.02072 * 337.40014 * 5 3 2 32 32 H 1.09001 * 111.12412 * 276.21899 * 6 5 3 33 33 H 1.08997 * 111.16535 * 152.06557 * 6 5 3 34 34 H 0.97005 * 119.99852 * 180.02562 * 15 14 12 35 35 H 1.08995 * 109.47160 * 26.11940 * 20 11 9 36 36 H 1.09002 * 109.47060 * 146.11662 * 20 11 9 37 37 H 1.08997 * 109.46850 * 184.99797 * 21 20 11 38 38 H 1.08993 * 109.47182 * 305.00102 * 21 20 11 39 39 H 1.08997 * 109.47106 * 299.99210 * 23 22 21 40 40 H 1.09001 * 109.47599 * 59.99402 * 23 22 21 41 41 H 1.09005 * 109.47199 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9914 -0.8308 5 6 3.5786 1.4541 -0.1267 6 6 3.9799 2.6054 0.8352 7 6 2.8995 2.4588 1.9362 8 1 3.1875 1.6854 2.6482 9 6 2.6947 3.7722 2.6463 10 8 1.6394 4.3607 2.5405 11 7 3.6842 4.2929 3.3987 12 6 4.8772 3.6280 3.5178 13 1 5.3196 3.1537 2.6543 14 6 5.5143 3.5594 4.7508 15 7 4.8449 3.8185 5.8515 16 14 7.3224 3.0992 4.8435 17 1 8.1509 4.3288 4.7626 18 1 7.5911 2.4048 6.1284 19 1 7.6623 2.1980 3.7133 20 6 3.4853 5.5699 4.0886 21 6 4.0131 6.7094 3.2145 22 8 3.2296 6.7976 2.0227 23 6 3.6412 7.8365 1.1321 24 8 1.7022 2.0759 1.2411 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8898 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8820 1.6793 -1.1491 31 1 4.0052 0.5067 0.2030 32 1 3.9076 3.5739 0.3404 33 1 4.9789 2.4483 1.2418 34 1 5.2898 3.7709 6.7122 35 1 2.4222 5.7192 4.2773 36 1 4.0245 5.5591 5.0358 37 1 3.9467 7.6488 3.7632 38 1 5.0529 6.5145 2.9523 39 1 3.5668 8.7992 1.6378 40 1 4.6735 7.6654 0.8266 41 1 2.9976 7.8371 0.2524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457209409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -145.749301 kcal Electronic energy + Delta-G solvation = -22511.311322 eV Core-core repulsion = 19197.831427 eV Total energy + Delta-G solvation = -3313.479895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15732 -39.63583 -38.41043 -36.58972 -34.40202 -33.54880 -33.05636 -31.17635 -29.14314 -27.19345 -26.80535 -25.16740 -23.37116 -22.68512 -21.71876 -20.84083 -19.03338 -18.32385 -17.38861 -16.98302 -16.88222 -16.70670 -16.26016 -15.97425 -15.67479 -15.12944 -14.99201 -14.77298 -14.08480 -14.04358 -13.84582 -13.54534 -13.34115 -13.18893 -12.79906 -12.73482 -12.68921 -12.59052 -12.39821 -12.09396 -12.00568 -11.90132 -11.77918 -11.64091 -11.42709 -11.00425 -10.65054 -10.52383 -9.98525 -9.36058 -8.24782 -6.08167 1.46220 1.51333 1.61570 2.07483 2.32135 2.59805 3.00693 3.10988 3.37821 3.67477 3.82646 4.04539 4.19052 4.26171 4.26763 4.35914 4.38231 4.47925 4.52367 4.56386 4.58474 4.66719 4.67646 4.78241 4.88345 4.93322 5.00935 5.01382 5.06465 5.09964 5.19624 5.27280 5.39918 5.45628 5.58610 6.09748 6.18929 6.38718 6.51246 7.17918 7.64436 8.12358 8.78139 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.007407 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.497841 B = 3779.103141 C = 4853.024368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.063 3.937 4 H 0.075 0.925 5 C -0.136 4.136 6 C -0.131 4.131 7 C 0.086 3.914 8 H 0.081 0.919 9 C 0.466 3.534 10 O -0.619 6.619 11 N -0.442 5.442 12 C -0.358 4.358 13 H 0.109 0.891 14 C 0.003 3.997 15 N -0.899 5.899 16 Si 0.982 3.018 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.252 1.252 20 C 0.115 3.885 21 C 0.062 3.938 22 O -0.408 6.408 23 C 0.027 3.973 24 O -0.386 6.386 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.272 0.728 35 H 0.035 0.965 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 -2.958 -10.504 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.006 3.994 4 H 0.093 0.907 5 C -0.173 4.173 6 C -0.168 4.168 7 C 0.026 3.974 8 H 0.098 0.902 9 C 0.255 3.745 10 O -0.504 6.504 11 N -0.162 5.162 12 C -0.485 4.485 13 H 0.126 0.874 14 C -0.200 4.200 15 N -0.536 5.536 16 Si 0.805 3.195 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.176 1.176 20 C -0.009 4.009 21 C -0.015 4.015 22 O -0.327 6.327 23 C -0.070 4.070 24 O -0.305 6.305 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.939 -2.747 -10.308 11.065 hybrid contribution 0.835 0.343 0.756 1.178 sum 3.775 -2.403 -9.552 10.548 Atomic orbital electron populations 1.21694 0.95773 1.01858 1.01228 1.21896 0.96659 0.94531 1.03260 1.23127 0.95814 0.94299 0.86139 0.90676 1.23192 0.93827 0.99029 1.01279 1.23133 0.99221 0.99612 0.94868 1.22412 0.85855 0.93908 0.95242 0.90165 1.20949 0.83257 0.87189 0.83126 1.90496 1.28423 1.64058 1.67467 1.43340 1.12400 1.17499 1.42981 1.20098 0.97657 1.34950 0.95841 0.87369 1.26332 1.03706 0.95789 0.94179 1.69999 1.37718 1.47263 0.98603 0.85093 0.77535 0.78743 0.78091 1.19755 1.21393 1.17569 1.21405 0.99488 0.83258 0.96748 1.22891 0.94480 0.97906 0.86270 1.88091 1.57313 1.55132 1.32184 1.22859 1.00129 0.90210 0.93755 1.88512 1.29409 1.78520 1.34066 0.91191 0.94974 0.92349 0.88076 0.92140 0.87500 0.88532 0.92091 0.87941 0.91862 0.94631 0.87623 0.91766 0.93115 0.92939 0.93588 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.83 71.98 0.71 -3.02 16 2 C -0.13 -3.10 5.50 30.59 0.17 -2.93 16 3 C 0.06 1.95 3.52 31.07 0.11 2.06 16 4 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 5 C -0.14 -3.52 6.54 31.85 0.21 -3.31 16 6 C -0.13 -4.57 5.73 32.05 0.18 -4.39 16 7 C 0.09 3.84 3.09 30.51 0.09 3.94 16 8 H 0.08 3.63 8.00 -2.38 -0.02 3.61 16 9 C 0.47 25.10 6.77 87.66 0.59 25.69 16 10 O -0.62 -37.83 15.69 16.63 0.26 -37.57 16 11 N -0.44 -23.05 2.46 -635.53 -1.56 -24.61 16 12 C -0.36 -17.54 8.29 84.04 0.70 -16.84 16 13 H 0.11 4.85 4.73 -2.91 -0.01 4.84 16 14 C 0.00 0.13 5.06 84.93 0.43 0.56 16 15 N -0.90 -47.07 11.43 21.67 0.25 -46.82 16 16 Si 0.98 37.40 29.59 68.60 2.03 39.43 16 17 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.29 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 20 C 0.11 5.78 5.49 86.38 0.47 6.26 16 21 C 0.06 2.60 6.27 71.98 0.45 3.06 16 22 O -0.41 -17.95 9.97 -148.98 -1.49 -19.43 16 23 C 0.03 0.83 11.01 113.37 1.25 2.08 16 24 O -0.39 -16.84 9.91 -130.49 -1.29 -18.13 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.03 1.00 7.89 -2.39 -0.02 0.98 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.10 2.13 7.86 -2.39 -0.02 2.12 16 32 H 0.06 2.29 8.05 -2.39 -0.02 2.28 16 33 H 0.10 3.41 5.90 -2.39 -0.01 3.40 16 34 H 0.27 13.39 8.31 -92.70 -0.77 12.62 16 35 H 0.04 1.94 7.31 -2.39 -0.02 1.93 16 36 H 0.11 5.47 5.62 -2.39 -0.01 5.45 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -69.49 330.68 4.56 -64.93 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 1.00 Total: 29.05 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.36 Total: 13.16 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.32 Total: -71.43 kcal Atomic # 8 Polarization: -72.62 SS G_CDS: -2.52 Total: -75.14 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -69.49 4.56 -64.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.818 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds