Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47558 * 2 1 4 4 N 1.46507 * 109.47048 * 119.99869 * 2 1 3 5 5 C 1.46495 * 119.99962 * 300.00093 * 4 2 1 6 6 C 1.50693 * 109.47330 * 269.99747 * 5 4 2 7 7 H 1.08000 * 120.00252 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00317 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00118 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00090 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46942 * 90.00055 * 10 8 6 12 12 H 1.48493 * 109.47506 * 210.00301 * 10 8 6 13 13 H 1.48503 * 109.46919 * 330.00353 * 10 8 6 14 14 C 1.34773 * 119.99853 * 119.99878 * 4 2 1 15 15 O 1.21516 * 120.00072 * 180.02562 * 14 4 2 16 16 O 1.34637 * 120.00436 * 0.02562 * 14 4 2 17 17 C 1.45196 * 117.00542 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47510 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.87039 * 54.29798 * 18 17 16 20 20 C 1.54104 * 109.88136 * 175.30680 * 18 17 16 21 21 C 1.54805 * 104.18715 * 121.60340 * 20 18 17 22 22 C 1.54993 * 102.09764 * 20.87963 * 21 20 18 23 23 O 1.43741 * 110.00290 * 293.21064 * 18 17 16 24 24 H 1.09003 * 109.47130 * 300.00182 * 1 2 3 25 25 H 1.09004 * 109.46764 * 59.99988 * 1 2 3 26 26 H 1.09001 * 109.47506 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47506 * 239.99734 * 2 1 3 28 28 H 1.08995 * 109.47382 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47168 * 300.00589 * 3 2 1 30 30 H 1.09003 * 109.47049 * 59.99768 * 3 2 1 31 31 H 1.08997 * 109.47000 * 29.99910 * 5 4 2 32 32 H 1.09000 * 109.47228 * 149.99634 * 5 4 2 33 33 H 0.96997 * 120.00067 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47244 * 59.99427 * 17 16 14 35 35 H 1.09004 * 109.47019 * 300.00225 * 17 16 14 36 36 H 1.09004 * 110.48326 * 240.27942 * 20 18 17 37 37 H 1.09003 * 110.48376 * 2.92383 * 20 18 17 38 38 H 1.09004 * 110.90856 * 139.08289 * 21 20 18 39 39 H 1.09008 * 110.90524 * 262.68042 * 21 20 18 40 40 H 1.09000 * 110.61715 * 81.47543 * 22 21 20 41 41 H 1.08999 * 110.61939 * 204.47512 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 2.7030 0.8018 2.9831 7 1 3.5431 1.0356 2.3459 8 6 2.5815 1.4100 4.2145 9 7 3.4878 2.2760 4.6124 10 14 1.1290 1.0051 5.3170 11 1 1.4780 -0.1409 6.1946 12 1 0.7980 2.1864 6.1536 13 1 -0.0438 0.6477 4.4791 14 6 2.7931 -1.7864 1.0726 15 8 3.1978 -2.3595 2.0647 16 8 3.1188 -2.2462 -0.1502 17 6 3.9559 -3.4311 -0.2076 18 6 4.2184 -3.8000 -1.6691 19 1 4.6323 -2.9422 -2.1991 20 6 5.2007 -4.9851 -1.7422 21 6 4.4218 -6.0764 -2.5160 22 6 3.3427 -5.2437 -3.2540 23 8 2.9955 -4.2193 -2.2976 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6904 0.2974 2.4843 32 1 1.6237 -1.0226 3.2292 33 1 3.4025 2.7036 5.4789 34 1 3.4500 -4.2579 0.2910 35 1 4.9038 -3.2309 0.2921 36 1 6.1014 -4.7008 -2.2864 37 1 5.4529 -5.3338 -0.7408 38 1 5.0713 -6.5882 -3.2262 39 1 3.9623 -6.7872 -1.8291 40 1 3.7542 -4.7992 -4.1602 41 1 2.4751 -5.8607 -3.4876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495699279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = -128.875926 kcal Electronic energy + Delta-G solvation = -21828.230144 eV Core-core repulsion = 18515.481933 eV Total energy + Delta-G solvation = -3312.748211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.04242 -39.33734 -36.85902 -35.38378 -32.68707 -32.41251 -31.17219 -30.76789 -28.05675 -26.65150 -25.61237 -22.80557 -22.17249 -21.41568 -21.15507 -19.25870 -17.31512 -16.94900 -16.86227 -16.42192 -16.01154 -15.51319 -15.07518 -14.49393 -13.87450 -13.83822 -13.66743 -13.28753 -13.13564 -12.48371 -12.35176 -12.16464 -11.94891 -11.86993 -11.66164 -11.59166 -11.43863 -11.32034 -10.96019 -10.94309 -10.79204 -10.49239 -10.26708 -10.17062 -10.05381 -9.82761 -9.64572 -9.37323 -8.55410 -7.75326 -6.05584 -4.03277 2.80672 3.31454 3.37387 3.39593 3.62211 3.69724 4.28062 4.32999 4.42082 4.61941 4.69822 4.94846 5.04137 5.18295 5.27015 5.32268 5.41283 5.42352 5.50677 5.54668 5.63604 5.66713 5.75110 5.76982 5.86634 6.10300 6.19206 6.34509 6.40744 6.61143 6.63460 6.75203 6.89228 7.06108 7.09796 7.36964 7.62518 8.27952 8.50716 8.98282 9.13972 9.54640 11.07588 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.004556 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.302379 B = 6143.987815 C = 6562.435227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 C -0.155 4.155 4 N -0.567 5.567 5 C 0.228 3.772 6 C -0.524 4.524 7 H 0.078 0.922 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.643 3.357 15 O -0.574 6.574 16 O -0.370 6.370 17 C 0.090 3.910 18 C 0.079 3.921 19 H 0.080 0.920 20 C -0.149 4.149 21 C -0.155 4.155 22 C 0.043 3.957 23 O -0.363 6.363 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -12.394 -16.193 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 C -0.213 4.213 4 N -0.306 5.306 5 C 0.109 3.891 6 C -0.563 4.563 7 H 0.096 0.904 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.397 3.603 15 O -0.463 6.463 16 O -0.285 6.285 17 C 0.014 3.986 18 C 0.021 3.979 19 H 0.098 0.902 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.034 4.034 23 O -0.282 6.282 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.924 -12.396 -15.703 20.028 hybrid contribution -0.309 -0.225 0.746 0.839 sum -1.233 -12.621 -14.957 19.609 Atomic orbital electron populations 1.22162 0.95698 1.01786 1.02266 1.21022 0.93817 0.94202 0.87593 1.22128 1.01733 0.95291 1.02159 1.46999 1.49763 1.24948 1.08849 1.19682 0.96476 0.95106 0.77841 1.21361 1.09310 1.22531 1.03072 0.90406 1.24825 0.96090 0.94739 0.97285 1.69891 1.34620 1.28338 1.20743 0.86911 0.83457 0.78268 0.81433 1.19936 1.21081 1.19014 1.18055 0.79398 0.81689 0.81172 1.90946 1.57645 1.60239 1.37496 1.86218 1.66366 1.44530 1.31382 1.23012 0.94631 0.85854 0.95075 1.22816 0.85407 0.97055 0.92648 0.90228 1.22924 0.98640 0.94734 1.02413 1.23145 0.98084 0.98274 0.99801 1.23573 0.98302 0.89178 0.92328 1.89015 1.28584 1.56040 1.54592 0.91763 0.91945 0.92842 0.89536 0.92517 0.93158 0.90186 0.94393 0.94541 0.92609 0.90934 0.90108 0.89873 0.89780 0.90083 0.90310 0.92131 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.17 37.16 0.34 -2.15 16 2 C 0.14 2.49 3.27 -67.93 -0.22 2.27 16 3 C -0.16 -2.80 8.47 37.16 0.31 -2.49 16 4 N -0.57 -12.63 2.39 -173.24 -0.41 -13.04 16 5 C 0.23 5.69 3.66 -5.20 -0.02 5.67 16 6 C -0.52 -14.97 8.38 -34.44 -0.29 -15.26 16 7 H 0.08 2.44 7.87 -52.49 -0.41 2.02 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 10 Si 0.87 21.55 27.47 -169.99 -4.67 16.89 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 14 C 0.64 14.70 8.40 54.05 0.45 15.16 16 15 O -0.57 -14.89 15.71 -19.29 -0.30 -15.20 16 16 O -0.37 -7.11 8.77 -42.18 -0.37 -7.48 16 17 C 0.09 1.39 4.93 37.16 0.18 1.57 16 18 C 0.08 0.95 3.71 -26.16 -0.10 0.85 16 19 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.15 -1.28 6.64 -25.20 -0.17 -1.45 16 21 C -0.16 -1.16 7.15 -24.73 -0.18 -1.33 16 22 C 0.04 0.38 7.72 38.21 0.29 0.67 16 23 O -0.36 -4.83 11.19 -36.08 -0.40 -5.24 16 24 H 0.06 1.05 6.66 -51.93 -0.35 0.70 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.49 6.81 -51.93 -0.35 1.13 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.64 6.92 -51.93 -0.36 1.28 16 31 H 0.04 0.89 5.48 -51.93 -0.28 0.61 16 32 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -34.12 331.52 -6.62 -40.74 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.75 Total: -0.39 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 0.52 Total: 5.52 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.36 Total: -39.84 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.08 Total: -27.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.12 -6.62 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495699279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.136 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds