Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47558 * 2 1 4 4 N 1.46507 * 109.47048 * 119.99869 * 2 1 3 5 5 C 1.46495 * 119.99962 * 300.00093 * 4 2 1 6 6 C 1.50693 * 109.47330 * 269.99747 * 5 4 2 7 7 H 1.08000 * 120.00252 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00317 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00118 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00090 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46942 * 90.00055 * 10 8 6 12 12 H 1.48493 * 109.47506 * 210.00301 * 10 8 6 13 13 H 1.48503 * 109.46919 * 330.00353 * 10 8 6 14 14 C 1.34773 * 119.99853 * 119.99878 * 4 2 1 15 15 O 1.21516 * 120.00072 * 180.02562 * 14 4 2 16 16 O 1.34637 * 120.00436 * 0.02562 * 14 4 2 17 17 C 1.45196 * 117.00542 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47510 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.87039 * 54.29798 * 18 17 16 20 20 C 1.54104 * 109.88136 * 175.30680 * 18 17 16 21 21 C 1.54805 * 104.18715 * 121.60340 * 20 18 17 22 22 C 1.54993 * 102.09764 * 20.87963 * 21 20 18 23 23 O 1.43741 * 110.00290 * 293.21064 * 18 17 16 24 24 H 1.09003 * 109.47130 * 300.00182 * 1 2 3 25 25 H 1.09004 * 109.46764 * 59.99988 * 1 2 3 26 26 H 1.09001 * 109.47506 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47506 * 239.99734 * 2 1 3 28 28 H 1.08995 * 109.47382 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47168 * 300.00589 * 3 2 1 30 30 H 1.09003 * 109.47049 * 59.99768 * 3 2 1 31 31 H 1.08997 * 109.47000 * 29.99910 * 5 4 2 32 32 H 1.09000 * 109.47228 * 149.99634 * 5 4 2 33 33 H 0.96997 * 120.00067 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47244 * 59.99427 * 17 16 14 35 35 H 1.09004 * 109.47019 * 300.00225 * 17 16 14 36 36 H 1.09004 * 110.48326 * 240.27942 * 20 18 17 37 37 H 1.09003 * 110.48376 * 2.92383 * 20 18 17 38 38 H 1.09004 * 110.90856 * 139.08289 * 21 20 18 39 39 H 1.09008 * 110.90524 * 262.68042 * 21 20 18 40 40 H 1.09000 * 110.61715 * 81.47543 * 22 21 20 41 41 H 1.08999 * 110.61939 * 204.47512 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 2.7030 0.8018 2.9831 7 1 3.5431 1.0356 2.3459 8 6 2.5815 1.4100 4.2145 9 7 3.4878 2.2760 4.6124 10 14 1.1290 1.0051 5.3170 11 1 1.4780 -0.1409 6.1946 12 1 0.7980 2.1864 6.1536 13 1 -0.0438 0.6477 4.4791 14 6 2.7931 -1.7864 1.0726 15 8 3.1978 -2.3595 2.0647 16 8 3.1188 -2.2462 -0.1502 17 6 3.9559 -3.4311 -0.2076 18 6 4.2184 -3.8000 -1.6691 19 1 4.6323 -2.9422 -2.1991 20 6 5.2007 -4.9851 -1.7422 21 6 4.4218 -6.0764 -2.5160 22 6 3.3427 -5.2437 -3.2540 23 8 2.9955 -4.2193 -2.2976 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6904 0.2974 2.4843 32 1 1.6237 -1.0226 3.2292 33 1 3.4025 2.7036 5.4789 34 1 3.4500 -4.2579 0.2910 35 1 4.9038 -3.2309 0.2921 36 1 6.1014 -4.7008 -2.2864 37 1 5.4529 -5.3338 -0.7408 38 1 5.0713 -6.5882 -3.2262 39 1 3.9623 -6.7872 -1.8291 40 1 3.7542 -4.7992 -4.1602 41 1 2.4751 -5.8607 -3.4876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495699279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = -151.962121 kcal Electronic energy + Delta-G solvation = -21829.231236 eV Core-core repulsion = 18515.481933 eV Total energy + Delta-G solvation = -3313.749303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59870 -40.36476 -38.44671 -37.11331 -34.83864 -33.24172 -32.74502 -31.89936 -29.98859 -28.01535 -26.71036 -24.67151 -23.20701 -22.85641 -22.04051 -20.91084 -19.11374 -18.93930 -18.21999 -17.72744 -17.07613 -16.72206 -16.40237 -16.25464 -15.58301 -15.05489 -14.71615 -14.63469 -14.53821 -14.42071 -13.78948 -13.66099 -13.37697 -13.24383 -12.88885 -12.74099 -12.63974 -12.49727 -12.37550 -12.34674 -12.17355 -11.92639 -11.83138 -11.71691 -11.62407 -11.55893 -11.32598 -10.78966 -10.70707 -9.58315 -8.30038 -6.33848 1.21267 1.36151 1.38597 1.46793 1.85471 2.33278 2.83310 2.92046 3.04705 3.54532 3.76672 3.90403 3.99531 4.05805 4.13540 4.25068 4.29756 4.40640 4.41138 4.51958 4.66148 4.77878 4.81704 4.85707 4.86652 4.87821 4.94216 5.00907 5.05116 5.07445 5.17702 5.28662 5.37937 5.45300 5.54552 5.61324 5.93257 6.26108 6.53581 6.66402 7.23388 7.40373 8.86593 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.004556 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.302379 B = 6143.987815 C = 6562.435227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 C -0.147 4.147 4 N -0.573 5.573 5 C 0.239 3.761 6 C -0.526 4.526 7 H 0.033 0.967 8 C 0.015 3.985 9 N -0.944 5.944 10 Si 0.940 3.060 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.237 1.237 14 C 0.639 3.361 15 O -0.615 6.615 16 O -0.365 6.365 17 C 0.081 3.919 18 C 0.083 3.917 19 H 0.083 0.917 20 C -0.146 4.146 21 C -0.149 4.149 22 C 0.035 3.965 23 O -0.396 6.396 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.029 0.971 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.268 0.732 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -13.504 -17.929 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 C -0.205 4.205 4 N -0.311 5.311 5 C 0.118 3.882 6 C -0.565 4.565 7 H 0.051 0.949 8 C -0.183 4.183 9 N -0.584 5.584 10 Si 0.763 3.237 11 H -0.202 1.202 12 H -0.200 1.200 13 H -0.160 1.160 14 C 0.393 3.607 15 O -0.507 6.507 16 O -0.279 6.279 17 C 0.006 3.994 18 C 0.025 3.975 19 H 0.101 0.899 20 C -0.183 4.183 21 C -0.186 4.186 22 C -0.041 4.041 23 O -0.316 6.316 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.048 0.952 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.472 -13.513 -17.506 22.253 hybrid contribution 0.277 0.098 1.160 1.197 sum -2.194 -13.414 -16.346 21.259 Atomic orbital electron populations 1.22116 0.92982 1.02443 1.03592 1.21358 0.95946 0.93589 0.86242 1.22042 0.99975 0.95639 1.02805 1.47095 1.49642 1.25049 1.09295 1.19394 0.96189 0.93536 0.79063 1.21476 1.08939 1.23304 1.02781 0.94851 1.25746 0.99319 0.94396 0.98878 1.70038 1.37038 1.29786 1.21553 0.85831 0.80422 0.78075 0.79387 1.20237 1.20002 1.15982 1.18264 0.79025 0.81691 0.81711 1.90902 1.59142 1.61601 1.39062 1.86235 1.66722 1.45842 1.29054 1.23419 0.93772 0.84178 0.98032 1.22855 0.86045 0.98689 0.89947 0.89931 1.22970 0.98631 0.93626 1.03112 1.23152 0.97829 0.97682 0.99962 1.23845 0.99444 0.88679 0.92112 1.88969 1.29485 1.57453 1.55730 0.92622 0.88378 0.92514 0.88330 0.95189 0.88994 0.92878 0.92096 0.96105 0.92322 0.91588 0.90195 0.87647 0.89820 0.87376 0.90580 0.90648 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 9.17 71.98 0.66 -3.66 16 2 C 0.13 4.59 3.27 44.99 0.15 4.73 16 3 C -0.15 -5.23 8.47 71.98 0.61 -4.62 16 4 N -0.57 -25.67 2.39 -932.42 -2.23 -27.90 16 5 C 0.24 11.94 3.66 85.63 0.31 12.25 16 6 C -0.53 -31.00 8.38 25.60 0.21 -30.78 16 7 H 0.03 2.21 7.87 -2.91 -0.02 2.18 16 8 C 0.01 0.86 5.47 84.66 0.46 1.32 16 9 N -0.94 -59.64 13.96 21.45 0.30 -59.34 16 10 Si 0.94 44.34 27.47 68.60 1.88 46.22 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 14 C 0.64 29.80 8.40 129.79 1.09 30.89 16 15 O -0.61 -32.94 15.71 19.79 0.31 -32.63 16 16 O -0.36 -14.13 8.77 -53.67 -0.47 -14.60 16 17 C 0.08 2.52 4.93 71.98 0.35 2.87 16 18 C 0.08 1.91 3.71 30.97 0.11 2.03 16 19 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 20 C -0.15 -2.21 6.64 31.58 0.21 -2.00 16 21 C -0.15 -1.82 7.15 31.89 0.23 -1.59 16 22 C 0.03 0.54 7.72 72.66 0.56 1.10 16 23 O -0.40 -10.07 11.19 -148.17 -1.66 -11.73 16 24 H 0.05 1.67 6.66 -2.39 -0.02 1.65 16 25 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.10 3.23 6.81 -2.39 -0.02 3.22 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.05 2.17 6.92 -2.39 -0.02 2.16 16 31 H 0.06 2.78 5.48 -2.39 -0.01 2.76 16 32 H 0.02 1.11 6.85 -2.39 -0.02 1.10 16 33 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.08 1.29 7.70 -2.39 -0.02 1.27 16 38 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -77.03 331.52 4.05 -72.98 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.94 Total: 14.45 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 4.97 Total: 12.54 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -1.93 Total: -87.24 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -1.82 Total: -58.95 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -77.03 4.05 -72.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495699279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.983 kcal (2) G-P(sol) polarization free energy of solvation -77.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds