Wall clock time and date at job start Mon Mar 30 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47144 * 2 1 4 4 N 1.46498 * 109.47066 * 119.99855 * 2 1 3 5 5 C 1.46503 * 120.00026 * 120.00184 * 4 2 1 6 6 C 1.50702 * 109.47277 * 270.00181 * 5 4 2 7 7 H 1.08004 * 119.99730 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00231 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99848 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00011 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47086 * 60.00213 * 10 8 6 12 12 H 1.48499 * 109.47261 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47475 * 300.00251 * 10 8 6 14 14 C 1.34773 * 120.00089 * 299.99821 * 4 2 1 15 15 O 1.21517 * 120.00172 * 179.97438 * 14 4 2 16 16 O 1.34633 * 120.00010 * 0.02562 * 14 4 2 17 17 C 1.45206 * 117.00282 * 179.97438 * 16 14 4 18 18 C 1.53175 * 109.53928 * 90.44175 * 17 16 14 19 19 C 1.53092 * 109.16179 * 176.85166 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 1.08994 * 109.47258 * 300.00294 * 1 2 3 24 24 H 1.08997 * 109.46783 * 60.00332 * 1 2 3 25 25 H 1.09007 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47616 * 239.99897 * 2 1 3 27 27 H 1.09002 * 109.47335 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46978 * 300.00009 * 3 2 1 29 29 H 1.08994 * 109.47284 * 59.99722 * 3 2 1 30 30 H 1.08997 * 109.47231 * 30.00062 * 5 4 2 31 31 H 1.08998 * 109.47190 * 150.00146 * 5 4 2 32 32 H 0.97009 * 119.99638 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.61085 * 330.22549 * 17 16 14 34 34 H 1.09006 * 109.52647 * 296.75467 * 18 17 16 35 35 H 1.08998 * 109.52537 * 56.94359 * 18 17 16 36 36 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 37 37 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 38 38 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 39 39 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 40 40 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 41 41 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8606 -1.8817 1.0618 6 6 1.9894 -3.1105 1.0157 7 1 0.9156 -3.0138 1.0804 8 6 2.5630 -4.3581 0.8919 9 7 3.8705 -4.4757 0.8135 10 14 1.4830 -5.8812 0.8354 11 1 0.5627 -5.7926 -0.3267 12 1 2.3368 -7.0887 0.7003 13 1 0.6910 -5.9733 2.0881 14 6 1.6927 -0.2301 2.4202 15 8 2.0974 -0.8032 3.4124 16 8 0.9183 0.8643 2.5438 17 6 0.6074 1.3031 3.8925 18 6 1.6701 2.3002 4.3646 19 6 1.2920 2.8166 5.7553 20 8 -0.0047 3.4150 5.7035 21 6 -1.0462 2.5175 5.3138 22 6 -0.7621 1.9891 3.9054 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.4419 -1.8138 0.1423 31 1 3.5361 -1.9471 1.9147 32 1 4.2741 -5.3536 0.7268 33 1 0.5910 0.4434 4.5623 34 1 2.6397 1.8043 4.4114 35 1 1.7208 3.1361 3.6670 36 1 2.0221 3.5587 6.0784 37 1 1.2811 1.9860 6.4610 38 1 -2.0006 3.0442 5.3187 39 1 -1.0879 1.6830 6.0136 40 1 -0.7605 2.8188 3.1984 41 1 -1.5319 1.2707 3.6237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495998612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:51 Heat of formation + Delta-G solvation = -137.478374 kcal Electronic energy + Delta-G solvation = -22331.556623 eV Core-core repulsion = 19018.435382 eV Total energy + Delta-G solvation = -3313.121241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24325 -38.98787 -36.62777 -35.51331 -33.03994 -32.48889 -31.26175 -30.94127 -27.17026 -26.76271 -24.91786 -23.70201 -22.96760 -21.84949 -20.32565 -19.55711 -17.13482 -16.56027 -16.52047 -16.17582 -15.68919 -15.44834 -14.90849 -14.69097 -14.17534 -13.87913 -13.71928 -13.27674 -13.19120 -13.00033 -12.46768 -12.24088 -11.90403 -11.76853 -11.54546 -11.44629 -11.26471 -11.05787 -10.93768 -10.83264 -10.55136 -10.50992 -10.34827 -10.11422 -10.00218 -9.81739 -9.66090 -9.52137 -8.45089 -7.75698 -6.06471 -4.11183 2.86516 3.31088 3.35322 3.38605 3.66413 3.71421 4.36047 4.48379 4.66659 4.71076 4.82919 5.05457 5.10997 5.25324 5.29759 5.37704 5.42510 5.51939 5.57214 5.58640 5.71993 5.78123 5.88238 5.96863 6.01042 6.06257 6.15663 6.23550 6.29109 6.61792 6.71371 6.79102 7.00628 7.10990 7.42503 7.50606 7.89633 8.19065 8.39556 8.88478 9.20114 9.54336 11.01531 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023089 B = 0.005073 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.389037 B = 5517.884415 C = 5877.566444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 C -0.167 4.167 4 N -0.573 5.573 5 C 0.260 3.740 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.641 3.359 15 O -0.573 6.573 16 O -0.363 6.363 17 C 0.102 3.898 18 C -0.172 4.172 19 C 0.066 3.934 20 O -0.384 6.384 21 C 0.066 3.934 22 C -0.152 4.152 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 14.858 3.450 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 C -0.225 4.225 4 N -0.312 5.312 5 C 0.142 3.858 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.394 3.606 15 O -0.462 6.462 16 O -0.278 6.278 17 C 0.046 3.954 18 C -0.210 4.210 19 C -0.011 4.011 20 O -0.303 6.303 21 C -0.011 4.011 22 C -0.190 4.190 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.266 14.749 3.809 16.877 hybrid contribution -0.405 -1.366 -0.175 1.435 sum -7.671 13.383 3.634 15.847 Atomic orbital electron populations 1.22254 0.95620 1.02492 1.01934 1.20958 0.94175 0.92398 0.88813 1.22298 1.01149 0.96658 1.02404 1.47494 1.52350 1.30055 1.01295 1.19367 0.89186 0.78927 0.98315 1.21412 0.93553 0.90976 1.50710 0.92398 1.24916 0.95063 0.98946 0.95059 1.69921 1.09258 1.24296 1.49912 0.86549 0.80239 0.81958 0.78619 1.20204 1.21138 1.20228 1.18204 0.78362 0.78871 0.85123 1.90935 1.58161 1.60343 1.36784 1.86413 1.65870 1.44287 1.31265 1.22441 0.93893 0.96603 0.82501 1.22628 1.00266 0.99918 0.98147 1.22563 0.84728 0.98366 0.95442 1.87914 1.16213 1.37312 1.88857 1.22565 0.91254 0.93729 0.93572 1.22309 0.96266 1.01482 0.98900 0.91403 0.92522 0.92130 0.89143 0.92832 0.92219 0.91180 0.94364 0.93679 0.92607 0.89648 0.89924 0.90317 0.88390 0.92711 0.88199 0.92789 0.89983 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.12 37.16 0.34 -2.28 16 2 C 0.14 2.48 3.28 -67.93 -0.22 2.25 16 3 C -0.17 -2.45 9.12 37.16 0.34 -2.11 16 4 N -0.57 -12.61 2.41 -173.23 -0.42 -13.03 16 5 C 0.26 6.81 5.13 -5.19 -0.03 6.79 16 6 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 7 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.64 14.08 7.74 54.05 0.42 14.50 16 15 O -0.57 -14.64 15.18 -19.29 -0.29 -14.94 16 16 O -0.36 -6.37 5.18 -40.31 -0.21 -6.58 16 17 C 0.10 1.51 2.55 -26.55 -0.07 1.45 16 18 C -0.17 -2.25 5.78 -26.59 -0.15 -2.40 16 19 C 0.07 0.73 6.84 37.21 0.25 0.98 16 20 O -0.38 -4.51 10.77 -35.23 -0.38 -4.89 16 21 C 0.07 0.66 6.84 37.20 0.25 0.91 16 22 C -0.15 -1.73 5.80 -26.59 -0.15 -1.89 16 23 H 0.07 1.08 6.00 -51.93 -0.31 0.76 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.60 7.79 -51.93 -0.40 1.19 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.05 6.00 -51.93 -0.31 0.74 16 30 H 0.04 1.00 7.92 -51.93 -0.41 0.59 16 31 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.09 1.43 7.16 -51.93 -0.37 1.06 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -32.13 330.84 -6.85 -38.98 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.81 Total: -0.30 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 0.56 Total: 4.63 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.32 Total: -38.69 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.88 Total: -26.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.13 -6.85 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495998612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.496 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds