Wall clock time and date at job start Mon Mar 30 2020 01:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 C 1.50697 * 109.46759 * 240.00702 * 2 1 3 5 5 H 1.08000 * 120.00002 * 239.99700 * 4 2 1 6 6 C 1.37877 * 120.00514 * 59.99702 * 4 2 1 7 7 N 1.31511 * 119.99673 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00259 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46891 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46944 * 119.99820 * 8 6 4 11 11 H 1.48500 * 109.47136 * 240.00032 * 8 6 4 12 12 C 1.52994 * 109.47183 * 120.00252 * 2 1 3 13 13 N 1.46496 * 109.47447 * 299.99884 * 12 2 1 14 14 C 1.34774 * 119.99836 * 180.02562 * 13 12 2 15 15 O 1.21504 * 120.00381 * 0.02562 * 14 13 12 16 16 O 1.34647 * 119.99712 * 179.97438 * 14 13 12 17 17 C 1.45197 * 116.99791 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46914 * 179.97438 * 17 16 14 19 19 H 1.08994 * 110.33315 * 304.20864 * 18 17 16 20 20 C 1.54475 * 110.46564 * 181.89230 * 18 17 16 21 21 C 1.54512 * 104.06386 * 217.14590 * 20 18 17 22 22 C 1.54474 * 104.06131 * 0.02562 * 21 20 18 23 23 O 1.44426 * 110.36828 * 66.46014 * 18 17 16 24 24 H 1.09009 * 109.47091 * 299.99404 * 1 2 3 25 25 H 1.08995 * 109.47519 * 59.99457 * 1 2 3 26 26 H 1.08997 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47602 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47828 * 300.00672 * 3 2 1 29 29 H 1.09009 * 109.47483 * 60.00563 * 3 2 1 30 30 H 0.97010 * 119.99928 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46826 * 179.97438 * 12 2 1 32 32 H 1.08996 * 109.47093 * 60.00334 * 12 2 1 33 33 H 0.97001 * 119.99852 * 359.97438 * 13 12 2 34 34 H 1.09004 * 109.46995 * 60.00769 * 17 16 14 35 35 H 1.08999 * 109.47681 * 299.99929 * 17 16 14 36 36 H 1.09002 * 110.51057 * 335.78938 * 20 18 17 37 37 H 1.08996 * 110.51289 * 98.49906 * 20 18 17 38 38 H 1.08999 * 110.51561 * 118.64366 * 21 20 18 39 39 H 1.09000 * 110.51089 * 241.21647 * 21 20 18 40 40 H 1.09006 * 110.37557 * 265.14427 * 22 21 20 41 41 H 1.09004 * 110.37781 * 142.81270 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1483 -2.2853 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1470 -0.1854 -4.8162 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4911 3.6694 15 8 2.5771 -1.4784 3.7808 16 8 1.4295 0.1439 4.7688 17 6 1.8197 -0.4080 6.0539 18 6 1.2207 0.4414 7.1767 19 1 1.5196 1.4835 7.0640 20 6 1.6607 -0.0982 8.5557 21 6 0.4151 0.0947 9.4493 22 6 -0.6304 0.7274 8.5044 23 8 -0.2192 0.3287 7.1788 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9565 -0.8899 29 1 1.6767 1.9564 0.8901 30 1 0.7085 1.1615 -3.4844 31 1 3.1300 -0.7216 1.2489 32 1 1.6767 -1.7489 1.2491 33 1 0.9944 0.7581 2.3564 34 1 2.9066 -0.4039 6.1362 35 1 1.4528 -1.4311 6.1365 36 1 1.9216 -1.1543 8.4870 37 1 2.5007 0.4794 8.9415 38 1 0.0601 -0.8659 9.8224 39 1 0.6400 0.7658 10.2783 40 1 -0.6157 1.8136 8.5949 41 1 -1.6253 0.3410 8.7258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496475351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:12 Heat of formation + Delta-G solvation = -139.349097 kcal Electronic energy + Delta-G solvation = -21129.155274 eV Core-core repulsion = 17815.952912 eV Total energy + Delta-G solvation = -3313.202362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19052 -39.43103 -37.05409 -35.66738 -33.37341 -32.46993 -31.23872 -30.60478 -26.28498 -25.70119 -25.47077 -24.70511 -22.33700 -21.30862 -20.93836 -18.91624 -18.24140 -17.03790 -16.63674 -16.15727 -15.89211 -15.48637 -15.36854 -14.76931 -14.09808 -13.91700 -13.62136 -13.45314 -12.86986 -12.59491 -12.21347 -12.13195 -12.06264 -11.70803 -11.60534 -11.37629 -11.18571 -10.97692 -10.88133 -10.65541 -10.46791 -10.35456 -10.25635 -10.07765 -10.01320 -9.62880 -9.35708 -8.78195 -8.50930 -8.34252 -6.01654 -4.11990 2.55463 3.28147 3.29895 3.36742 3.41461 3.58863 4.20315 4.30780 4.41113 4.56080 4.70184 4.86834 5.00845 5.07303 5.17833 5.25253 5.31155 5.39786 5.45788 5.54196 5.64701 5.71255 6.15689 6.30083 6.47632 6.55352 6.60426 6.79514 6.86887 6.93796 7.02534 7.03501 7.36521 7.57279 7.70275 8.01439 8.02105 8.15380 8.38408 8.82540 8.89831 9.53840 10.99866 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.049057 B = 0.003175 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.632788 B = 8815.780560 C = 9091.227954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.148 3.852 13 N -0.694 5.694 14 C 0.639 3.361 15 O -0.585 6.585 16 O -0.369 6.369 17 C 0.095 3.905 18 C 0.075 3.925 19 H 0.081 0.919 20 C -0.148 4.148 21 C -0.154 4.154 22 C 0.041 3.959 23 O -0.361 6.361 24 H 0.008 0.992 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.008 0.992 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.405 0.595 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 1.953 20.663 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.352 5.352 14 C 0.391 3.609 15 O -0.476 6.476 16 O -0.284 6.284 17 C 0.020 3.980 18 C 0.017 3.983 19 H 0.099 0.901 20 C -0.186 4.186 21 C -0.192 4.192 22 C -0.036 4.036 23 O -0.280 6.280 24 H 0.027 0.973 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.925 1.501 20.440 20.516 hybrid contribution 0.249 -0.106 -0.622 0.678 sum -0.675 1.396 19.819 19.879 Atomic orbital electron populations 1.21847 0.97569 0.99329 1.00295 1.18390 0.93011 0.92882 0.90168 1.21846 0.98633 0.98257 1.00283 1.20998 1.31541 1.12157 0.89745 0.92273 1.24881 0.94840 0.94930 0.98871 1.69821 1.36605 1.22753 1.23161 0.86497 0.78628 0.79725 0.82921 1.19741 1.21051 1.21065 1.21815 0.98223 0.95673 0.81633 1.45186 1.54446 1.33047 1.02546 1.18279 0.79248 0.81629 0.81702 1.90944 1.42346 1.27723 1.86564 1.86257 1.71890 1.55902 1.14317 1.22900 0.99441 0.97444 0.78261 1.23084 0.82207 0.99682 0.93308 0.90123 1.22907 0.98773 1.03016 0.93865 1.22940 0.95330 1.02217 0.98733 1.23424 0.98808 0.99036 0.82293 1.89269 1.19664 1.88342 1.30721 0.97277 0.89493 0.95335 0.95350 0.89495 0.97306 0.93024 0.92401 0.92398 0.75912 0.89893 0.90521 0.90027 0.89823 0.90457 0.90337 0.92134 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 2 C 0.06 1.32 0.50 -155.67 -0.08 1.24 16 3 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 4 C -0.51 -13.28 8.01 -34.44 -0.28 -13.55 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.15 3.21 4.50 -4.05 -0.02 3.19 16 13 N -0.69 -13.50 4.96 -65.29 -0.32 -13.82 16 14 C 0.64 12.48 8.75 54.05 0.47 12.95 16 15 O -0.59 -12.81 16.13 -19.27 -0.31 -13.12 16 16 O -0.37 -6.25 10.27 -42.01 -0.43 -6.68 16 17 C 0.09 1.26 5.09 37.16 0.19 1.45 16 18 C 0.08 0.80 3.58 -25.95 -0.09 0.71 16 19 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 20 C -0.15 -1.10 6.63 -25.16 -0.17 -1.26 16 21 C -0.15 -1.00 7.09 -25.16 -0.18 -1.18 16 22 C 0.04 0.34 7.63 37.93 0.29 0.63 16 23 O -0.36 -4.56 11.34 -35.73 -0.41 -4.96 16 24 H 0.01 0.17 6.86 -51.92 -0.36 -0.18 16 25 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 29 H 0.01 0.16 6.86 -51.92 -0.36 -0.19 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.40 7.36 6.27 -40.82 -0.26 7.11 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.59 7.88 -51.93 -0.41 0.18 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -29.78 329.76 -6.98 -36.76 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.62 Total: 3.95 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 0.65 Total: 0.35 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.19 Total: -36.97 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.15 Total: -24.76 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.78 -6.98 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496475351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.588 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds