Wall clock time and date at job start Mon Mar 30 2020 01:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 C 1.50697 * 109.46759 * 240.00702 * 2 1 3 5 5 H 1.08000 * 120.00002 * 239.99700 * 4 2 1 6 6 C 1.37877 * 120.00514 * 59.99702 * 4 2 1 7 7 N 1.31511 * 119.99673 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00259 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46891 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46944 * 119.99820 * 8 6 4 11 11 H 1.48500 * 109.47136 * 240.00032 * 8 6 4 12 12 C 1.52994 * 109.47183 * 120.00252 * 2 1 3 13 13 N 1.46496 * 109.47447 * 299.99884 * 12 2 1 14 14 C 1.34774 * 119.99836 * 180.02562 * 13 12 2 15 15 O 1.21504 * 120.00381 * 0.02562 * 14 13 12 16 16 O 1.34647 * 119.99712 * 179.97438 * 14 13 12 17 17 C 1.45197 * 116.99791 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46914 * 179.97438 * 17 16 14 19 19 H 1.08994 * 110.33315 * 304.20864 * 18 17 16 20 20 C 1.54475 * 110.46564 * 181.89230 * 18 17 16 21 21 C 1.54512 * 104.06386 * 217.14590 * 20 18 17 22 22 C 1.54474 * 104.06131 * 0.02562 * 21 20 18 23 23 O 1.44426 * 110.36828 * 66.46014 * 18 17 16 24 24 H 1.09009 * 109.47091 * 299.99404 * 1 2 3 25 25 H 1.08995 * 109.47519 * 59.99457 * 1 2 3 26 26 H 1.08997 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47602 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47828 * 300.00672 * 3 2 1 29 29 H 1.09009 * 109.47483 * 60.00563 * 3 2 1 30 30 H 0.97010 * 119.99928 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46826 * 179.97438 * 12 2 1 32 32 H 1.08996 * 109.47093 * 60.00334 * 12 2 1 33 33 H 0.97001 * 119.99852 * 359.97438 * 13 12 2 34 34 H 1.09004 * 109.46995 * 60.00769 * 17 16 14 35 35 H 1.08999 * 109.47681 * 299.99929 * 17 16 14 36 36 H 1.09002 * 110.51057 * 335.78938 * 20 18 17 37 37 H 1.08996 * 110.51289 * 98.49906 * 20 18 17 38 38 H 1.08999 * 110.51561 * 118.64366 * 21 20 18 39 39 H 1.09000 * 110.51089 * 241.21647 * 21 20 18 40 40 H 1.09006 * 110.37557 * 265.14427 * 22 21 20 41 41 H 1.09004 * 110.37781 * 142.81270 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1483 -2.2853 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1470 -0.1854 -4.8162 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4911 3.6694 15 8 2.5771 -1.4784 3.7808 16 8 1.4295 0.1439 4.7688 17 6 1.8197 -0.4080 6.0539 18 6 1.2207 0.4414 7.1767 19 1 1.5196 1.4835 7.0640 20 6 1.6607 -0.0982 8.5557 21 6 0.4151 0.0947 9.4493 22 6 -0.6304 0.7274 8.5044 23 8 -0.2192 0.3287 7.1788 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9565 -0.8899 29 1 1.6767 1.9564 0.8901 30 1 0.7085 1.1615 -3.4844 31 1 3.1300 -0.7216 1.2489 32 1 1.6767 -1.7489 1.2491 33 1 0.9944 0.7581 2.3564 34 1 2.9066 -0.4039 6.1362 35 1 1.4528 -1.4311 6.1365 36 1 1.9216 -1.1543 8.4870 37 1 2.5007 0.4794 8.9415 38 1 0.0601 -0.8659 9.8224 39 1 0.6400 0.7658 10.2783 40 1 -0.6157 1.8136 8.5949 41 1 -1.6253 0.3410 8.7258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496475351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:12 Heat of formation + Delta-G solvation = -158.428891 kcal Electronic energy + Delta-G solvation = -21129.982636 eV Core-core repulsion = 17815.952912 eV Total energy + Delta-G solvation = -3314.029723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56987 -40.32984 -38.70291 -37.24126 -35.14713 -33.21242 -32.81062 -31.74216 -27.67136 -27.57011 -27.17950 -26.18823 -23.15209 -22.43266 -21.97342 -20.69389 -19.83253 -18.17067 -17.88349 -17.71781 -17.06235 -16.70863 -16.52133 -16.37262 -15.64085 -15.15360 -14.94626 -14.65284 -14.39833 -14.05957 -14.04066 -13.21061 -13.15482 -12.99620 -12.71157 -12.68808 -12.56747 -12.49135 -12.29252 -12.23572 -12.13135 -11.73228 -11.70885 -11.51320 -11.50118 -11.23738 -10.78544 -10.71069 -10.40771 -10.10403 -8.01764 -6.17882 1.16766 1.43522 1.47824 1.57358 1.74366 2.46938 2.85457 3.18084 3.22301 3.60303 3.83309 3.94171 4.05621 4.15725 4.30535 4.38879 4.42843 4.46358 4.47850 4.68189 4.77524 4.86304 4.91473 4.95767 5.05358 5.05745 5.09758 5.16353 5.18881 5.20099 5.38118 5.52422 5.66223 5.68300 5.86780 6.12919 6.19758 6.41999 6.46953 6.86401 7.30872 7.50035 8.97777 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.049057 B = 0.003175 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.632788 B = 8815.780560 C = 9091.227954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.527 4.527 5 H 0.049 0.951 6 C 0.027 3.973 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.163 3.837 13 N -0.689 5.689 14 C 0.643 3.357 15 O -0.611 6.611 16 O -0.369 6.369 17 C 0.086 3.914 18 C 0.075 3.925 19 H 0.088 0.912 20 C -0.143 4.143 21 C -0.148 4.148 22 C 0.032 3.968 23 O -0.399 6.399 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.260 0.740 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.412 0.588 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 2.385 22.293 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.041 3.959 13 N -0.348 5.348 14 C 0.396 3.604 15 O -0.504 6.504 16 O -0.283 6.283 17 C 0.011 3.989 18 C 0.017 3.983 19 H 0.105 0.895 20 C -0.181 4.181 21 C -0.186 4.186 22 C -0.044 4.044 23 O -0.319 6.319 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.250 0.750 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.799 1.953 22.100 22.201 hybrid contribution 0.173 -0.227 -1.047 1.086 sum -0.626 1.726 21.053 21.133 Atomic orbital electron populations 1.21705 0.97211 0.98861 1.00358 1.18379 0.93251 0.93167 0.90045 1.21698 0.98225 0.97775 1.00390 1.21268 1.31792 1.12274 0.91226 0.93241 1.25475 0.95099 0.95585 1.01075 1.69926 1.36973 1.23369 1.23611 0.85655 0.78074 0.78717 0.80040 1.19795 1.20833 1.20755 1.21431 0.97540 0.95012 0.81920 1.44954 1.54537 1.33117 1.02212 1.18283 0.78725 0.81224 0.82193 1.90924 1.43496 1.28912 1.87050 1.86278 1.71538 1.55626 1.14815 1.23300 1.00610 0.97715 0.77235 1.23202 0.81699 0.99667 0.93741 0.89452 1.22943 0.99933 1.03270 0.91941 1.22946 0.94078 1.02877 0.98686 1.23665 0.99782 0.99904 0.81036 1.89223 1.20653 1.88813 1.33235 0.94856 0.91669 0.96015 0.95819 0.91721 0.94753 0.93004 0.93233 0.93533 0.75037 0.88627 0.91385 0.90026 0.87594 0.90031 0.88063 0.91133 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 4 C -0.53 -27.78 8.01 25.60 0.21 -27.57 16 5 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 6 C 0.03 1.44 5.15 84.66 0.44 1.88 16 7 N -0.90 -48.17 9.35 21.45 0.20 -47.97 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.16 7.06 4.50 86.38 0.39 7.45 16 13 N -0.69 -26.17 4.96 -590.87 -2.93 -29.10 16 14 C 0.64 24.64 8.75 129.79 1.14 25.78 16 15 O -0.61 -26.56 16.13 19.83 0.32 -26.24 16 16 O -0.37 -12.13 10.27 -53.98 -0.55 -12.68 16 17 C 0.09 2.20 5.09 71.98 0.37 2.56 16 18 C 0.07 1.47 3.58 31.10 0.11 1.59 16 19 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 20 C -0.14 -1.77 6.63 31.61 0.21 -1.56 16 21 C -0.15 -1.52 7.09 31.61 0.22 -1.30 16 22 C 0.03 0.48 7.63 72.48 0.55 1.03 16 23 O -0.40 -9.66 11.34 -148.50 -1.68 -11.34 16 24 H 0.03 1.31 6.86 -2.38 -0.02 1.29 16 25 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 29 H 0.03 1.33 6.86 -2.38 -0.02 1.31 16 30 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.41 14.34 6.27 -92.71 -0.58 13.76 16 34 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.01 7.88 -2.39 -0.02 0.99 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -62.97 329.76 2.57 -60.39 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.43 Total: 20.17 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 4.77 Total: 2.25 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.73 Total: -77.07 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -1.92 Total: -50.27 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -62.97 2.57 -60.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496475351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.035 kcal (2) G-P(sol) polarization free energy of solvation -62.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds