Wall clock time and date at job start Mon Mar 30 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 N 1.46503 * 109.47275 * 180.02562 * 3 2 1 5 5 C 1.37095 * 119.99906 * 264.74692 * 4 3 2 6 6 H 1.07998 * 120.00092 * 146.16114 * 5 4 3 7 7 C 1.38949 * 119.99893 * 326.16697 * 5 4 3 8 8 N 1.31411 * 120.00004 * 337.67895 * 7 5 4 9 9 Si 1.86800 * 120.00186 * 157.68208 * 7 5 4 10 10 H 1.48505 * 109.47091 * 59.99594 * 9 7 5 11 11 H 1.48499 * 109.47486 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47080 * 300.00164 * 9 7 5 13 13 C 1.34778 * 120.00018 * 84.74711 * 4 3 2 14 14 O 1.21291 * 119.99498 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99698 * 359.97438 * 13 4 3 16 16 O 1.42909 * 109.46651 * 180.02562 * 15 13 4 17 17 C 1.42899 * 114.00034 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47426 * 179.97438 * 17 16 15 19 19 H 1.08995 * 110.33202 * 305.70393 * 18 17 16 20 20 C 1.54480 * 110.37484 * 183.44805 * 18 17 16 21 21 C 1.54514 * 104.06174 * 217.19206 * 20 18 17 22 22 C 1.54478 * 104.06409 * 0.02562 * 21 20 18 23 23 O 1.44432 * 110.36668 * 67.94963 * 18 17 16 24 24 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47096 * 299.99909 * 1 2 3 26 26 H 1.09001 * 109.47118 * 60.00130 * 1 2 3 27 27 H 1.08997 * 109.47670 * 239.99679 * 2 1 3 28 28 H 1.09005 * 109.47481 * 119.99519 * 2 1 3 29 29 H 1.09001 * 109.46973 * 299.99958 * 3 2 1 30 30 H 1.09001 * 109.47411 * 59.99692 * 3 2 1 31 31 H 0.97006 * 120.00045 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47717 * 299.99982 * 15 13 4 33 33 H 1.09000 * 109.46810 * 60.00662 * 15 13 4 34 34 H 1.08999 * 109.46581 * 300.00276 * 17 16 15 35 35 H 1.09004 * 109.47237 * 59.99814 * 17 16 15 36 36 H 1.08995 * 110.51060 * 335.83946 * 20 18 17 37 37 H 1.08994 * 110.50597 * 98.54809 * 20 18 17 38 38 H 1.08997 * 110.50714 * 118.64620 * 21 20 18 39 39 H 1.08999 * 110.51171 * 241.21505 * 21 20 18 40 40 H 1.08996 * 110.37171 * 142.80984 * 22 21 20 41 41 H 1.08999 * 110.37042 * 265.03687 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5511 1.1814 6 1 5.1338 1.0397 1.3075 7 6 3.6731 2.3189 2.2172 8 7 2.8018 3.2682 1.9593 9 14 4.2155 2.0019 3.9764 10 1 5.6837 2.1970 4.0845 11 1 3.5215 2.9481 4.8866 12 1 3.8721 0.6081 4.3567 13 6 4.1784 1.3359 -1.1632 14 8 5.3913 1.3354 -1.1636 15 6 3.4243 1.2160 -2.4624 16 8 4.3526 1.1162 -3.5444 17 6 3.7375 0.9983 -4.8289 18 6 4.8200 0.8997 -5.9056 19 1 5.5094 1.7403 -5.8277 20 6 4.1789 0.8581 -7.3105 21 6 5.0699 -0.1263 -8.1007 22 6 6.1434 -0.5636 -7.0796 23 8 5.5350 -0.3496 -5.7865 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 2.4405 3.8045 2.6823 32 1 2.7980 0.3243 -2.4382 33 1 2.7974 2.0968 -2.6012 34 1 3.1171 0.1025 -4.8537 35 1 3.1176 1.8750 -5.0168 36 1 3.1562 0.4857 -7.2528 37 1 4.2012 1.8464 -7.7697 38 1 4.4876 -0.9854 -8.4337 39 1 5.5306 0.3746 -8.9521 40 1 6.3889 -1.6169 -7.2148 41 1 7.0382 0.0502 -7.1834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522183195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:00 Heat of formation + Delta-G solvation = -150.233469 kcal Electronic energy + Delta-G solvation = -21377.508430 eV Core-core repulsion = 18063.834087 eV Total energy + Delta-G solvation = -3313.674343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73007 -40.30752 -38.34389 -37.05157 -34.57153 -33.12386 -33.04744 -31.79664 -29.34133 -27.36335 -26.31022 -25.63558 -22.91304 -22.51243 -21.97459 -20.92700 -18.88798 -18.28318 -17.70128 -17.23386 -17.00284 -16.77962 -16.53537 -16.18880 -15.89753 -15.39903 -15.11646 -14.84466 -14.58871 -14.09452 -13.82978 -13.42384 -13.31371 -13.08365 -12.93910 -12.70668 -12.62713 -12.57996 -12.26832 -12.16063 -12.14138 -12.08430 -11.98993 -11.55499 -11.47209 -10.93522 -10.74899 -10.64345 -10.34571 -9.49345 -8.36754 -6.06591 1.38130 1.40927 1.51256 1.96534 2.17023 2.47575 2.96339 2.97674 3.27061 3.67167 3.86162 3.94806 4.00501 4.03465 4.15687 4.23511 4.27289 4.32186 4.39648 4.44056 4.50330 4.57922 4.62192 4.75145 4.82167 4.88680 4.94894 4.98787 5.09456 5.15226 5.18661 5.30406 5.39809 5.46377 5.59654 5.90406 6.07649 6.24200 6.55061 7.16005 7.41380 8.02928 8.65458 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.004002 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.443884 B = 6995.227044 C = 7586.488329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.099 3.901 4 N -0.448 5.448 5 C -0.348 4.348 6 H 0.060 0.940 7 C 0.008 3.992 8 N -0.884 5.884 9 Si 0.982 3.018 10 H -0.279 1.279 11 H -0.267 1.267 12 H -0.264 1.264 13 C 0.436 3.564 14 O -0.624 6.624 15 C 0.067 3.933 16 O -0.396 6.396 17 C 0.057 3.943 18 C 0.068 3.932 19 H 0.062 0.938 20 C -0.138 4.138 21 C -0.146 4.146 22 C 0.028 3.972 23 O -0.402 6.402 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.276 0.724 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -4.781 -16.532 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C -0.024 4.024 4 N -0.168 5.168 5 C -0.475 4.475 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.521 5.521 9 Si 0.805 3.195 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.189 1.189 13 C 0.226 3.774 14 O -0.510 6.510 15 C -0.012 4.012 16 O -0.315 6.315 17 C -0.019 4.019 18 C 0.010 3.990 19 H 0.080 0.920 20 C -0.176 4.176 21 C -0.183 4.183 22 C -0.048 4.048 23 O -0.322 6.322 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.561 -4.757 -16.211 18.123 hybrid contribution 0.460 0.177 0.900 1.026 sum -6.100 -4.580 -15.311 17.106 Atomic orbital electron populations 1.21625 0.92870 1.02487 1.02398 1.21906 0.97728 0.96485 1.01172 1.21865 0.79449 0.96981 1.04130 1.43749 1.06312 1.62692 1.04014 1.19368 1.07191 1.30277 0.90707 0.92171 1.26049 0.97031 0.92701 1.03731 1.69967 1.31010 1.16688 1.34426 0.85190 0.78322 0.78872 0.77130 1.20453 1.19092 1.18878 1.21048 0.88058 0.82099 0.86219 1.90487 1.16622 1.56321 1.87593 1.22171 0.91171 1.02784 0.85073 1.88042 1.33579 1.94889 1.14955 1.22917 0.95159 1.02178 0.81680 1.23172 0.93263 0.87411 0.95127 0.91966 1.22921 1.00745 1.01993 0.91941 1.22930 0.96906 1.00021 0.98484 1.23674 0.96344 1.02621 0.82152 1.89265 1.69017 1.40026 1.33914 0.91180 0.92997 0.91235 0.92483 0.93688 0.91500 0.88660 0.91398 0.89280 0.89260 0.91516 0.89243 0.89097 0.88141 0.89470 0.88347 0.88224 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.83 16 2 C -0.13 -4.74 6.17 30.59 0.19 -4.55 16 3 C 0.10 4.26 4.72 86.38 0.41 4.67 16 4 N -0.45 -24.08 2.56 -635.52 -1.63 -25.71 16 5 C -0.35 -20.59 8.98 84.04 0.75 -19.83 16 6 H 0.06 3.86 7.70 -2.91 -0.02 3.84 16 7 C 0.01 0.43 4.92 84.93 0.42 0.84 16 8 N -0.88 -47.64 11.33 21.66 0.25 -47.39 16 9 Si 0.98 43.00 29.61 68.60 2.03 45.03 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 13 C 0.44 23.80 7.67 87.66 0.67 24.48 16 14 O -0.62 -40.65 16.32 15.97 0.26 -40.39 16 15 C 0.07 2.73 5.02 71.24 0.36 3.08 16 16 O -0.40 -16.68 9.88 -127.67 -1.26 -17.94 16 17 C 0.06 1.62 5.54 71.98 0.40 2.02 16 18 C 0.07 1.81 3.57 31.10 0.11 1.92 16 19 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 20 C -0.14 -2.21 6.63 31.61 0.21 -2.00 16 21 C -0.15 -2.06 7.09 31.61 0.22 -1.84 16 22 C 0.03 0.60 7.63 72.48 0.55 1.15 16 23 O -0.40 -12.84 11.35 -148.59 -1.69 -14.52 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.91 6.59 -2.39 -0.02 1.89 16 28 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.07 2.54 6.66 -2.39 -0.02 2.52 16 30 H 0.10 4.55 5.34 -2.39 -0.01 4.53 16 31 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 32 H 0.09 3.08 6.53 -2.39 -0.02 3.06 16 33 H 0.09 3.12 7.41 -2.39 -0.02 3.10 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.09 1.23 7.87 -2.39 -0.02 1.21 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -79.31 334.34 3.97 -75.34 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.00 Total: 18.48 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.01 Total: 7.11 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.38 Total: -73.10 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -2.69 Total: -72.85 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -79.31 3.97 -75.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522183195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.898 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds