Wall clock time and date at job start Mon Mar 30 2020 01:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 C 1.53001 * 109.46996 * 177.86614 * 3 2 1 5 5 H 1.09001 * 109.46753 * 305.33357 * 4 3 2 6 6 O 1.42902 * 109.47123 * 65.32826 * 4 3 2 7 7 C 1.42900 * 113.99900 * 259.42058 * 6 4 3 8 8 C 1.53007 * 109.47012 * 178.94626 * 7 6 4 9 9 C 1.50699 * 109.47104 * 185.33228 * 4 3 2 10 10 O 1.21283 * 119.99712 * 244.99651 * 9 4 3 11 11 N 1.34774 * 120.00382 * 64.99919 * 9 4 3 12 12 C 1.47571 * 134.49540 * 180.02562 * 11 9 4 13 13 C 1.53941 * 86.11787 * 204.65519 * 12 11 9 14 14 O 1.42904 * 113.73951 * 90.74094 * 13 12 11 15 15 C 1.50697 * 113.74511 * 221.93553 * 13 12 11 16 16 H 1.08008 * 119.99941 * 358.08315 * 15 13 12 17 17 C 1.37880 * 120.00447 * 178.07174 * 15 13 12 18 18 N 1.31505 * 119.99969 * 180.02562 * 17 15 13 19 19 Si 1.86797 * 119.99576 * 0.02562 * 17 15 13 20 20 H 1.48508 * 109.46850 * 89.99654 * 19 17 15 21 21 H 1.48501 * 109.47099 * 209.99276 * 19 17 15 22 22 H 1.48494 * 109.47402 * 329.99966 * 19 17 15 23 23 C 1.47933 * 134.49678 * 0.02591 * 11 9 4 24 24 H 1.09002 * 109.46942 * 59.99937 * 1 2 3 25 25 H 1.08998 * 109.47220 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46956 * 300.00240 * 1 2 3 27 27 H 1.09000 * 109.46956 * 239.99760 * 2 1 3 28 28 H 1.09000 * 109.46991 * 119.99520 * 2 1 3 29 29 H 1.08996 * 109.46971 * 57.86633 * 3 2 1 30 30 H 1.09006 * 109.47158 * 297.86187 * 3 2 1 31 31 H 1.08997 * 109.47122 * 298.94575 * 7 6 4 32 32 H 1.09000 * 109.46928 * 58.95294 * 7 6 4 33 33 H 1.09004 * 109.47052 * 60.00160 * 8 7 6 34 34 H 1.08993 * 109.47131 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.46844 * 300.00396 * 8 7 6 36 36 H 1.09000 * 113.76991 * 90.35209 * 12 11 9 37 37 H 1.09004 * 113.87439 * 318.96979 * 12 11 9 38 38 H 0.96703 * 113.99941 * 181.92893 * 14 13 12 39 39 H 0.97006 * 119.99918 * 180.02562 * 18 17 15 40 40 H 1.08998 * 113.86797 * 41.08076 * 23 11 9 41 41 H 1.09000 * 113.76966 * 269.58589 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5691 1.4429 0.0537 5 1 3.9026 0.8591 0.9116 6 8 4.0880 0.8654 -1.1460 7 6 4.5033 -0.4945 -1.0042 8 6 5.0138 -1.0148 -2.3494 9 6 4.0668 2.8592 0.1857 10 8 4.7191 3.3583 -0.7066 11 7 3.7871 3.5711 1.2954 12 6 4.0996 4.9389 1.7527 13 6 3.9194 4.3905 3.1798 14 8 5.1267 3.8958 3.7628 15 6 3.1621 5.3177 4.0951 16 1 2.8305 6.2803 3.7347 17 6 2.8922 4.9371 5.3925 18 7 2.2309 5.7461 6.1910 19 14 3.4660 3.2723 6.0160 20 1 4.8250 3.4041 6.6002 21 1 2.5257 2.7822 7.0556 22 1 3.5037 2.3074 4.8879 23 6 3.0435 3.2954 2.5441 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6458 1.9672 0.8702 30 1 1.7083 1.9452 -0.9086 31 1 5.3015 -0.5554 -0.2645 32 1 3.6581 -1.1003 -0.6775 33 1 5.8590 -0.4090 -2.6762 34 1 5.3302 -2.0522 -2.2413 35 1 4.2156 -0.9539 -3.0891 36 1 3.3514 5.6789 1.4687 37 1 5.1181 5.2568 1.5296 38 1 5.0123 3.5235 4.6479 39 1 2.0413 5.4785 7.1040 40 1 3.2197 2.3000 2.9517 41 1 1.9859 3.5539 2.4919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529071959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:06 Heat of formation + Delta-G solvation = -94.285335 kcal Electronic energy + Delta-G solvation = -22072.920375 eV Core-core repulsion = 18761.672125 eV Total energy + Delta-G solvation = -3311.248250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03862 -38.61185 -37.04182 -34.82291 -34.38052 -32.58873 -31.67517 -29.83930 -28.23936 -25.84854 -25.42456 -24.09935 -22.76968 -21.26729 -20.20962 -18.71482 -17.47359 -17.15050 -16.65375 -16.27101 -15.92993 -15.29412 -14.96305 -14.62583 -14.13146 -13.69604 -13.48143 -13.28004 -13.18077 -12.88888 -12.76342 -12.48555 -12.21829 -12.12938 -12.07578 -11.94978 -11.32778 -11.29333 -11.26612 -11.09687 -10.95827 -10.65509 -10.63415 -10.17002 -9.87869 -9.54954 -9.21147 -8.97424 -8.67755 -8.05452 -6.45827 -4.52192 2.94520 2.95313 2.97619 3.08634 3.12446 3.90333 3.98963 4.56189 4.65943 4.79211 4.86549 4.94589 5.00593 5.03742 5.15353 5.22370 5.29230 5.43125 5.52177 5.53829 5.63234 5.73173 5.78494 5.81003 5.98338 5.99093 6.01197 6.04538 6.12135 6.17695 6.22355 6.32393 6.39222 6.57383 7.13667 7.17936 7.99453 8.24560 8.47184 8.58467 8.63230 9.11496 10.66384 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.005523 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.862143 B = 5068.302239 C = 5521.202062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.134 4.134 4 C 0.081 3.919 5 H 0.082 0.918 6 O -0.356 6.356 7 C 0.049 3.951 8 C -0.149 4.149 9 C 0.528 3.472 10 O -0.540 6.540 11 N -0.634 5.634 12 C 0.129 3.871 13 C 0.195 3.805 14 O -0.553 6.553 15 C -0.537 4.537 16 H 0.092 0.908 17 C 0.081 3.919 18 N -0.875 5.875 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.256 1.256 23 C 0.062 3.938 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.352 0.648 39 H 0.271 0.729 40 H 0.068 0.932 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 -13.715 -8.507 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.172 4.172 4 C 0.020 3.980 5 H 0.100 0.900 6 O -0.274 6.274 7 C -0.028 4.028 8 C -0.206 4.206 9 C 0.316 3.684 10 O -0.417 6.417 11 N -0.370 5.370 12 C 0.008 3.992 13 C 0.154 3.846 14 O -0.364 6.364 15 C -0.574 4.574 16 H 0.110 0.890 17 C -0.124 4.124 18 N -0.511 5.511 19 Si 0.685 3.315 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.181 1.181 23 C -0.061 4.061 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.204 0.796 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.993 -13.234 -9.717 16.449 hybrid contribution -0.085 -1.242 1.346 1.834 sum -1.078 -14.477 -8.371 16.757 Atomic orbital electron populations 1.21757 0.95388 1.01528 1.02175 1.21608 0.96375 0.96280 1.01962 1.22049 0.92987 0.98148 1.03968 1.21852 0.94370 0.92760 0.89024 0.90037 1.88017 1.82255 1.25827 1.31291 1.22705 0.98229 0.83212 0.98614 1.21715 1.02077 1.00421 0.96415 1.20053 0.80535 0.87315 0.80521 1.90660 1.40288 1.71737 1.39034 1.50169 1.53638 1.16209 1.16954 1.23275 1.01382 0.83833 0.90714 1.20560 0.82495 0.90228 0.91290 1.86477 1.34384 1.81725 1.33805 1.21235 1.35775 1.04427 0.96005 0.89027 1.24995 0.94045 0.96822 0.96571 1.69852 1.38120 1.35977 1.07151 0.87372 0.79374 0.84884 0.79889 1.19294 1.20910 1.18141 1.24730 0.98494 1.01424 0.81470 0.92619 0.92791 0.92407 0.91455 0.92107 0.89978 0.90483 0.93465 0.92915 0.91680 0.91233 0.91874 0.88697 0.90569 0.79641 0.91867 0.91343 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.33 4.95 -26.73 -0.13 -1.47 16 3 C -0.13 -1.79 4.87 -26.73 -0.13 -1.92 16 4 C 0.08 1.29 2.47 -27.88 -0.07 1.22 16 5 H 0.08 1.19 7.69 -51.93 -0.40 0.79 16 6 O -0.36 -5.70 9.30 -55.09 -0.51 -6.21 16 7 C 0.05 0.58 6.03 37.16 0.22 0.81 16 8 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16 9 C 0.53 10.60 7.41 -10.99 -0.08 10.52 16 10 O -0.54 -12.76 17.24 -14.30 -0.25 -13.01 16 11 N -0.63 -12.63 3.58 -178.04 -0.64 -13.27 16 12 C 0.13 2.69 8.22 -2.97 -0.02 2.66 16 13 C 0.20 4.34 1.05 -90.84 -0.10 4.25 16 14 O -0.55 -12.78 13.35 -35.23 -0.47 -13.25 16 15 C -0.54 -13.53 9.19 -34.44 -0.32 -13.85 16 16 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 17 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.88 -24.04 13.96 55.43 0.77 -23.26 16 19 Si 0.86 18.26 24.31 -169.99 -4.13 14.13 16 20 H -0.27 -5.59 7.05 56.52 0.40 -5.19 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.26 -5.02 5.16 56.52 0.29 -4.73 16 23 C 0.06 1.19 5.72 -2.76 -0.02 1.17 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.70 6.35 -51.93 -0.33 0.37 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.05 0.53 5.87 -51.93 -0.30 0.22 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.35 7.69 3.57 45.56 0.16 7.85 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.07 1.24 6.83 -51.93 -0.35 0.88 16 41 H 0.10 1.74 7.97 -51.93 -0.41 1.32 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -30.47 327.31 -6.58 -37.05 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.30 Total: 9.69 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 0.01 Total: 3.19 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.14 Total: -36.53 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.23 Total: -32.46 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.13 Total: 14.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.47 -6.58 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529071959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.240 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds