Wall clock time and date at job start Mon Mar 30 2020 01:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 C 1.53001 * 109.46996 * 177.86614 * 3 2 1 5 5 H 1.09001 * 109.46753 * 305.33357 * 4 3 2 6 6 O 1.42902 * 109.47123 * 65.32826 * 4 3 2 7 7 C 1.42900 * 113.99900 * 259.42058 * 6 4 3 8 8 C 1.53007 * 109.47012 * 178.94626 * 7 6 4 9 9 C 1.50699 * 109.47104 * 185.33228 * 4 3 2 10 10 O 1.21283 * 119.99712 * 244.99651 * 9 4 3 11 11 N 1.34774 * 120.00382 * 64.99919 * 9 4 3 12 12 C 1.47571 * 134.49540 * 180.02562 * 11 9 4 13 13 C 1.53941 * 86.11787 * 204.65519 * 12 11 9 14 14 O 1.42904 * 113.73951 * 90.74094 * 13 12 11 15 15 C 1.50697 * 113.74511 * 221.93553 * 13 12 11 16 16 H 1.08008 * 119.99941 * 358.08315 * 15 13 12 17 17 C 1.37880 * 120.00447 * 178.07174 * 15 13 12 18 18 N 1.31505 * 119.99969 * 180.02562 * 17 15 13 19 19 Si 1.86797 * 119.99576 * 0.02562 * 17 15 13 20 20 H 1.48508 * 109.46850 * 89.99654 * 19 17 15 21 21 H 1.48501 * 109.47099 * 209.99276 * 19 17 15 22 22 H 1.48494 * 109.47402 * 329.99966 * 19 17 15 23 23 C 1.47933 * 134.49678 * 0.02591 * 11 9 4 24 24 H 1.09002 * 109.46942 * 59.99937 * 1 2 3 25 25 H 1.08998 * 109.47220 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46956 * 300.00240 * 1 2 3 27 27 H 1.09000 * 109.46956 * 239.99760 * 2 1 3 28 28 H 1.09000 * 109.46991 * 119.99520 * 2 1 3 29 29 H 1.08996 * 109.46971 * 57.86633 * 3 2 1 30 30 H 1.09006 * 109.47158 * 297.86187 * 3 2 1 31 31 H 1.08997 * 109.47122 * 298.94575 * 7 6 4 32 32 H 1.09000 * 109.46928 * 58.95294 * 7 6 4 33 33 H 1.09004 * 109.47052 * 60.00160 * 8 7 6 34 34 H 1.08993 * 109.47131 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.46844 * 300.00396 * 8 7 6 36 36 H 1.09000 * 113.76991 * 90.35209 * 12 11 9 37 37 H 1.09004 * 113.87439 * 318.96979 * 12 11 9 38 38 H 0.96703 * 113.99941 * 181.92893 * 14 13 12 39 39 H 0.97006 * 119.99918 * 180.02562 * 18 17 15 40 40 H 1.08998 * 113.86797 * 41.08076 * 23 11 9 41 41 H 1.09000 * 113.76966 * 269.58589 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5691 1.4429 0.0537 5 1 3.9026 0.8591 0.9116 6 8 4.0880 0.8654 -1.1460 7 6 4.5033 -0.4945 -1.0042 8 6 5.0138 -1.0148 -2.3494 9 6 4.0668 2.8592 0.1857 10 8 4.7191 3.3583 -0.7066 11 7 3.7871 3.5711 1.2954 12 6 4.0996 4.9389 1.7527 13 6 3.9194 4.3905 3.1798 14 8 5.1267 3.8958 3.7628 15 6 3.1621 5.3177 4.0951 16 1 2.8305 6.2803 3.7347 17 6 2.8922 4.9371 5.3925 18 7 2.2309 5.7461 6.1910 19 14 3.4660 3.2723 6.0160 20 1 4.8250 3.4041 6.6002 21 1 2.5257 2.7822 7.0556 22 1 3.5037 2.3074 4.8879 23 6 3.0435 3.2954 2.5441 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6458 1.9672 0.8702 30 1 1.7083 1.9452 -0.9086 31 1 5.3015 -0.5554 -0.2645 32 1 3.6581 -1.1003 -0.6775 33 1 5.8590 -0.4090 -2.6762 34 1 5.3302 -2.0522 -2.2413 35 1 4.2156 -0.9539 -3.0891 36 1 3.3514 5.6789 1.4687 37 1 5.1181 5.2568 1.5296 38 1 5.0123 3.5235 4.6479 39 1 2.0413 5.4785 7.1040 40 1 3.2197 2.3000 2.9517 41 1 1.9859 3.5539 2.4919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529071959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:06 Heat of formation + Delta-G solvation = -116.092157 kcal Electronic energy + Delta-G solvation = -22073.865990 eV Core-core repulsion = 18761.672125 eV Total energy + Delta-G solvation = -3312.193865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58799 -39.99653 -38.54014 -36.29186 -35.59404 -34.54644 -32.62425 -31.18103 -29.62560 -27.43709 -27.11283 -25.26990 -23.71692 -22.20188 -21.86239 -20.28821 -19.33948 -18.41258 -18.23726 -17.81611 -17.07184 -16.74626 -16.29752 -15.66986 -15.55489 -15.40740 -15.00768 -14.75015 -14.39280 -14.16634 -14.11272 -13.82903 -13.66254 -13.23792 -12.98547 -12.92857 -12.84862 -12.65325 -12.45063 -12.27592 -12.20951 -11.96457 -11.92315 -11.52882 -11.37587 -11.11270 -10.94147 -10.60490 -10.27411 -9.71369 -8.41338 -6.54668 1.26530 1.29474 1.42383 1.47036 1.63742 2.19565 2.69291 2.79902 3.21294 3.40835 3.74866 3.79596 3.81627 4.10227 4.16952 4.17273 4.33097 4.34319 4.40600 4.44921 4.59186 4.61078 4.64265 4.66405 4.76993 4.85075 4.88481 4.92385 5.00054 5.01350 5.20166 5.23520 5.28764 5.30285 5.42455 6.05188 6.10687 6.53472 6.64834 6.72727 7.05496 7.14112 8.74067 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.005523 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.862143 B = 5068.302239 C = 5521.202062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.089 3.911 5 H 0.101 0.899 6 O -0.382 6.382 7 C 0.039 3.961 8 C -0.147 4.147 9 C 0.520 3.480 10 O -0.584 6.584 11 N -0.632 5.632 12 C 0.123 3.877 13 C 0.186 3.814 14 O -0.562 6.562 15 C -0.545 4.545 16 H 0.055 0.945 17 C 0.030 3.970 18 N -0.924 5.924 19 Si 0.916 3.084 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.223 1.223 23 C 0.077 3.923 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.357 0.643 39 H 0.274 0.726 40 H 0.092 0.908 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -17.167 -8.482 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.028 3.972 5 H 0.119 0.881 6 O -0.301 6.301 7 C -0.036 4.036 8 C -0.204 4.204 9 C 0.310 3.690 10 O -0.465 6.465 11 N -0.367 5.367 12 C 0.001 3.999 13 C 0.145 3.855 14 O -0.373 6.373 15 C -0.583 4.583 16 H 0.073 0.927 17 C -0.172 4.172 18 N -0.561 5.561 19 Si 0.740 3.260 20 H -0.185 1.185 21 H -0.207 1.207 22 H -0.147 1.147 23 C -0.045 4.045 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.210 0.790 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.274 -16.704 -9.703 19.359 hybrid contribution 0.032 -0.050 1.294 1.296 sum -1.242 -16.754 -8.409 18.787 Atomic orbital electron populations 1.21754 0.94541 1.02524 1.01972 1.21587 0.97030 0.94210 1.02831 1.22038 0.91108 1.00175 1.03340 1.21852 0.95629 0.89866 0.89903 0.88120 1.88001 1.82530 1.28092 1.31486 1.23011 0.99280 0.81579 0.99755 1.21753 1.01445 1.01691 0.95544 1.20986 0.79530 0.88946 0.79545 1.90632 1.42294 1.73072 1.40472 1.50164 1.53500 1.15639 1.17371 1.23279 1.01271 0.84994 0.90382 1.20574 0.82576 0.91378 0.90933 1.86472 1.34773 1.81784 1.34276 1.21326 1.36075 1.03852 0.97034 0.92691 1.25824 0.93830 1.01011 0.96506 1.69998 1.39922 1.38501 1.07722 0.86384 0.79002 0.80411 0.80223 1.18535 1.20701 1.14662 1.24606 0.98411 1.01280 0.80191 0.92947 0.91201 0.92572 0.91053 0.90709 0.89989 0.91747 0.93271 0.90497 0.93261 0.88376 0.91794 0.87962 0.91448 0.79022 0.91691 0.89009 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.12 -2.12 4.95 30.60 0.15 -1.97 16 3 C -0.13 -3.13 4.87 30.60 0.15 -2.98 16 4 C 0.09 2.61 2.47 29.85 0.07 2.69 16 5 H 0.10 2.56 7.69 -2.39 -0.02 2.54 16 6 O -0.38 -11.57 9.30 -129.99 -1.21 -12.78 16 7 C 0.04 0.83 6.03 71.98 0.43 1.26 16 8 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 9 C 0.52 20.37 7.41 87.66 0.65 21.02 16 10 O -0.58 -27.80 17.24 15.95 0.27 -27.52 16 11 N -0.63 -24.37 3.58 -839.42 -3.01 -27.38 16 12 C 0.12 5.12 8.22 86.49 0.71 5.83 16 13 C 0.19 8.09 1.05 -10.88 -0.01 8.08 16 14 O -0.56 -24.88 13.35 -148.98 -1.99 -26.86 16 15 C -0.55 -27.79 9.19 25.60 0.24 -27.56 16 16 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 17 C 0.03 1.51 5.47 84.66 0.46 1.97 16 18 N -0.92 -51.60 13.96 21.45 0.30 -51.30 16 19 Si 0.92 36.06 24.31 68.60 1.67 37.72 16 20 H -0.26 -9.93 7.05 99.48 0.70 -9.23 16 21 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.22 -7.52 5.16 99.48 0.51 -7.01 16 23 C 0.08 2.77 5.72 86.42 0.49 3.26 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.23 6.35 -2.39 -0.02 1.21 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.98 6.53 -2.39 -0.02 1.96 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.08 1.23 5.87 -2.39 -0.01 1.22 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 4.04 8.09 -2.39 -0.02 4.02 16 37 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 38 H 0.36 14.58 3.57 -74.06 -0.26 14.31 16 39 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 40 H 0.09 2.89 6.83 -2.39 -0.02 2.88 16 41 H 0.11 3.67 7.97 -2.39 -0.02 3.65 16 Total: -1.00 -67.15 327.31 1.39 -65.76 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.55 Total: 34.29 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.80 Total: 8.07 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -2.71 Total: -78.68 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -2.92 Total: -67.17 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 1.67 Total: 37.72 kcal Total: -67.15 1.39 -65.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529071959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.330 kcal (2) G-P(sol) polarization free energy of solvation -67.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds