Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.50695 * 109.46942 * 185.00287 * 3 2 1 6 6 H 1.08006 * 119.99867 * 239.99721 * 5 3 2 7 7 C 1.37878 * 120.00430 * 60.00421 * 5 3 2 8 8 N 1.31510 * 119.99542 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00289 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47639 * 59.99539 * 9 7 5 11 11 H 1.48501 * 109.47231 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46885 * 299.99624 * 9 7 5 13 13 N 1.46500 * 109.47170 * 65.00312 * 3 2 1 14 14 C 1.34782 * 120.00074 * 275.00525 * 13 3 2 15 15 O 1.21283 * 119.99713 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00015 * 180.02562 * 14 13 3 17 17 O 1.42897 * 109.47122 * 179.97438 * 16 14 13 18 18 C 1.42900 * 114.00442 * 179.97438 * 17 16 14 19 19 C 1.52991 * 109.47558 * 179.97438 * 18 17 16 20 20 H 1.09004 * 110.33451 * 305.70122 * 19 18 17 21 21 C 1.54481 * 110.37416 * 183.45167 * 19 18 17 22 22 C 1.54513 * 104.06294 * 217.19097 * 21 19 18 23 23 C 1.54482 * 104.06407 * 359.97438 * 22 21 19 24 24 O 1.44426 * 110.37209 * 67.95260 * 19 18 17 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 29 29 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 30 30 H 0.97002 * 120.00324 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00116 * 94.99625 * 13 3 2 32 32 H 1.09000 * 109.46907 * 299.98737 * 16 14 13 33 33 H 1.08997 * 109.47592 * 59.99293 * 16 14 13 34 34 H 1.08997 * 109.47142 * 300.00120 * 18 17 16 35 35 H 1.09005 * 109.46765 * 59.99879 * 18 17 16 36 36 H 1.08997 * 110.50949 * 335.83356 * 21 19 18 37 37 H 1.08998 * 110.51096 * 98.54648 * 21 19 18 38 38 H 1.08998 * 110.51070 * 118.64790 * 22 21 19 39 39 H 1.09002 * 110.50908 * 241.35759 * 22 21 19 40 40 H 1.08994 * 110.37118 * 142.80636 * 23 22 21 41 41 H 1.08994 * 110.37400 * 265.04089 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3813 10 1 6.5967 0.1452 -0.2345 11 1 6.3978 0.2157 -2.6500 12 1 6.5004 2.2799 -1.3809 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6643 1.3671 15 8 -0.3393 2.6325 0.4343 16 6 0.0368 3.3385 2.6546 17 8 -1.2884 3.8584 2.5298 18 6 -1.7657 4.5210 3.7025 19 6 -3.1855 5.0346 3.4559 20 1 -3.2131 5.6572 2.5616 21 6 -3.6900 5.8299 4.6805 22 6 -5.1873 5.4607 4.7771 23 6 -5.4105 4.4866 3.5991 24 8 -4.1051 3.9284 3.3270 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.8292 -0.0617 -2.9496 31 1 2.2720 2.1231 1.9978 32 1 0.0681 2.6144 3.4687 33 1 0.7282 4.1540 2.8668 34 1 -1.7721 3.8211 4.5381 35 1 -1.1115 5.3607 3.9370 36 1 -3.1612 5.5195 5.5817 37 1 -3.5705 6.9008 4.5161 38 1 -5.3987 4.9679 5.7260 39 1 -5.8080 6.3491 4.6603 40 1 -6.1078 3.6991 3.8848 41 1 -5.7829 5.0244 2.7273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545155635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -136.647169 kcal Electronic energy + Delta-G solvation = -21068.965776 eV Core-core repulsion = 17755.880579 eV Total energy + Delta-G solvation = -3313.085197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.68299 -38.99590 -37.15142 -34.88748 -32.37943 -32.34295 -31.19039 -30.71448 -27.98293 -26.44937 -25.09777 -22.90555 -22.15895 -21.25624 -20.32460 -19.27362 -17.27510 -17.06726 -16.42509 -16.06709 -15.94488 -15.40998 -15.23172 -15.02389 -14.26570 -14.00123 -13.93345 -13.45510 -12.70704 -12.63318 -12.46347 -12.03901 -11.79245 -11.67653 -11.48131 -11.39756 -11.28512 -11.20170 -10.96433 -10.88130 -10.78424 -10.29132 -10.12427 -9.88213 -9.61677 -9.55232 -9.02320 -8.84445 -8.46135 -7.76877 -6.09348 -4.19030 3.26896 3.29489 3.32617 3.36205 3.45560 3.71193 4.25287 4.32374 4.42927 4.61918 4.70076 4.95278 5.07110 5.09130 5.21315 5.21687 5.30618 5.33586 5.42251 5.47546 5.52998 5.58884 5.61902 5.70780 5.79750 6.46598 6.53978 6.68719 6.73721 7.10118 7.14394 7.29218 7.43510 7.50844 7.66069 7.79064 7.94693 8.22232 8.70812 8.81817 9.20143 9.48370 10.95956 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.043704 B = 0.003237 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.519961 B = 8648.848290 C = 9064.774353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.526 6.526 16 C 0.042 3.958 17 O -0.353 6.353 18 C 0.066 3.934 19 C 0.077 3.923 20 H 0.079 0.921 21 C -0.148 4.148 22 C -0.154 4.154 23 C 0.040 3.960 24 O -0.358 6.358 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.484 9.517 15.344 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.284 3.716 15 O -0.403 6.403 16 C -0.038 4.038 17 O -0.271 6.271 18 C -0.011 4.011 19 C 0.019 3.981 20 H 0.097 0.903 21 C -0.186 4.186 22 C -0.192 4.192 23 C -0.037 4.037 24 O -0.277 6.277 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.087 9.142 14.222 20.783 hybrid contribution 1.408 0.232 0.648 1.567 sum -10.679 9.374 14.870 20.568 Atomic orbital electron populations 1.21844 0.98233 0.98064 1.01386 1.21942 0.92679 0.99784 1.02232 1.18778 0.94101 0.89164 0.80866 0.93288 1.21196 0.90698 1.39129 1.06295 0.92139 1.24889 0.98581 0.94839 0.95393 1.69888 1.35209 1.37473 1.09343 0.86511 0.84881 0.78268 0.77430 1.20193 1.21143 1.20215 1.46402 1.14287 1.56537 1.18708 1.19966 0.83080 0.79934 0.88620 1.90702 1.51030 1.58513 1.40009 1.22341 0.85342 0.98328 0.97818 1.88090 1.29261 1.74603 1.35131 1.22575 0.93123 0.96511 0.88941 1.22989 0.89103 0.88263 0.97715 0.90323 1.22924 0.96088 1.00822 0.98780 1.22938 0.96223 1.00086 0.99982 1.23434 0.86902 0.96899 0.96430 1.89317 1.15878 1.30902 1.91600 0.94199 0.93144 0.95851 0.95052 0.88300 0.92498 0.78056 0.91032 0.91024 0.92497 0.91944 0.90389 0.90107 0.90606 0.90480 0.89105 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.52 37.16 0.32 -2.93 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 6.97 2.24 -69.09 -0.15 6.82 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.96 11.29 55.43 0.63 -24.34 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 13 N -0.71 -14.90 5.02 -54.94 -0.28 -15.18 16 14 C 0.50 10.44 6.47 -10.99 -0.07 10.37 16 15 O -0.53 -13.34 13.64 -14.36 -0.20 -13.53 16 16 C 0.04 0.65 6.42 36.00 0.23 0.88 16 17 O -0.35 -6.04 9.87 -57.52 -0.57 -6.61 16 18 C 0.07 0.79 5.54 37.15 0.21 1.00 16 19 C 0.08 0.89 3.57 -25.96 -0.09 0.80 16 20 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 21 C -0.15 -1.14 6.63 -25.16 -0.17 -1.31 16 22 C -0.15 -1.10 7.09 -25.16 -0.18 -1.28 16 23 C 0.04 0.38 7.63 37.94 0.29 0.67 16 24 O -0.36 -5.02 11.35 -35.63 -0.40 -5.43 16 25 H 0.04 0.93 5.65 -51.93 -0.29 0.63 16 26 H 0.05 1.27 7.85 -51.93 -0.41 0.86 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.39 6.87 8.54 -40.82 -0.35 6.52 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -33.27 332.80 -7.76 -41.03 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.77 Total: 4.49 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.16 Total: -1.10 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.35 Total: -39.51 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.17 Total: -25.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.27 -7.76 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545155635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.613 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds