Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.50695 * 109.46942 * 185.00287 * 3 2 1 6 6 H 1.08006 * 119.99867 * 239.99721 * 5 3 2 7 7 C 1.37878 * 120.00430 * 60.00421 * 5 3 2 8 8 N 1.31510 * 119.99542 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00289 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47639 * 59.99539 * 9 7 5 11 11 H 1.48501 * 109.47231 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46885 * 299.99624 * 9 7 5 13 13 N 1.46500 * 109.47170 * 65.00312 * 3 2 1 14 14 C 1.34782 * 120.00074 * 275.00525 * 13 3 2 15 15 O 1.21283 * 119.99713 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00015 * 180.02562 * 14 13 3 17 17 O 1.42897 * 109.47122 * 179.97438 * 16 14 13 18 18 C 1.42900 * 114.00442 * 179.97438 * 17 16 14 19 19 C 1.52991 * 109.47558 * 179.97438 * 18 17 16 20 20 H 1.09004 * 110.33451 * 305.70122 * 19 18 17 21 21 C 1.54481 * 110.37416 * 183.45167 * 19 18 17 22 22 C 1.54513 * 104.06294 * 217.19097 * 21 19 18 23 23 C 1.54482 * 104.06407 * 359.97438 * 22 21 19 24 24 O 1.44426 * 110.37209 * 67.95260 * 19 18 17 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 29 29 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 30 30 H 0.97002 * 120.00324 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00116 * 94.99625 * 13 3 2 32 32 H 1.09000 * 109.46907 * 299.98737 * 16 14 13 33 33 H 1.08997 * 109.47592 * 59.99293 * 16 14 13 34 34 H 1.08997 * 109.47142 * 300.00120 * 18 17 16 35 35 H 1.09005 * 109.46765 * 59.99879 * 18 17 16 36 36 H 1.08997 * 110.50949 * 335.83356 * 21 19 18 37 37 H 1.08998 * 110.51096 * 98.54648 * 21 19 18 38 38 H 1.08998 * 110.51070 * 118.64790 * 22 21 19 39 39 H 1.09002 * 110.50908 * 241.35759 * 22 21 19 40 40 H 1.08994 * 110.37118 * 142.80636 * 23 22 21 41 41 H 1.08994 * 110.37400 * 265.04089 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3813 10 1 6.5967 0.1452 -0.2345 11 1 6.3978 0.2157 -2.6500 12 1 6.5004 2.2799 -1.3809 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6643 1.3671 15 8 -0.3393 2.6325 0.4343 16 6 0.0368 3.3385 2.6546 17 8 -1.2884 3.8584 2.5298 18 6 -1.7657 4.5210 3.7025 19 6 -3.1855 5.0346 3.4559 20 1 -3.2131 5.6572 2.5616 21 6 -3.6900 5.8299 4.6805 22 6 -5.1873 5.4607 4.7771 23 6 -5.4105 4.4866 3.5991 24 8 -4.1051 3.9284 3.3270 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.8292 -0.0617 -2.9496 31 1 2.2720 2.1231 1.9978 32 1 0.0681 2.6144 3.4687 33 1 0.7282 4.1540 2.8668 34 1 -1.7721 3.8211 4.5381 35 1 -1.1115 5.3607 3.9370 36 1 -3.1612 5.5195 5.5817 37 1 -3.5705 6.9008 4.5161 38 1 -5.3987 4.9679 5.7260 39 1 -5.8080 6.3491 4.6603 40 1 -6.1078 3.6991 3.8848 41 1 -5.7829 5.0244 2.7273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545155635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -160.410480 kcal Electronic energy + Delta-G solvation = -21069.996230 eV Core-core repulsion = 17755.880579 eV Total energy + Delta-G solvation = -3314.115652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80778 -40.34293 -38.39588 -36.79767 -34.30406 -33.13441 -32.92657 -31.74096 -29.58943 -28.06942 -26.03135 -24.87489 -22.90986 -22.27404 -21.85549 -21.12586 -18.99526 -18.13381 -17.57269 -17.38459 -17.15821 -16.68742 -16.59718 -16.39496 -15.94583 -15.46171 -14.96279 -14.59956 -14.57059 -13.97204 -13.83806 -13.51833 -13.16543 -12.99388 -12.88824 -12.68636 -12.63751 -12.61587 -12.20107 -12.17600 -12.13455 -12.04767 -11.58870 -11.47300 -11.06114 -10.74816 -10.67484 -10.61525 -10.47252 -9.63238 -8.14644 -6.32670 1.46006 1.48277 1.56000 1.83694 2.07553 2.44211 2.96474 3.11437 3.15696 3.67986 3.89945 3.97075 4.01595 4.17466 4.22314 4.29901 4.35289 4.45060 4.48144 4.52100 4.56090 4.59369 4.75832 4.82131 4.89581 4.95392 5.05757 5.09620 5.18519 5.24988 5.43540 5.55808 5.62922 5.78861 5.88881 5.93552 6.16355 6.19220 6.75458 7.01386 7.34806 7.61373 8.90812 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.043704 B = 0.003237 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.519961 B = 8648.848290 C = 9064.774353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.702 5.702 14 C 0.492 3.508 15 O -0.580 6.580 16 C 0.054 3.946 17 O -0.396 6.396 18 C 0.060 3.940 19 C 0.066 3.934 20 H 0.063 0.937 21 C -0.139 4.139 22 C -0.148 4.148 23 C 0.029 3.971 24 O -0.401 6.401 25 H 0.041 0.959 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 10.527 18.272 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.353 5.353 14 C 0.279 3.721 15 O -0.460 6.460 16 C -0.026 4.026 17 O -0.315 6.315 18 C -0.016 4.016 19 C 0.008 3.992 20 H 0.081 0.919 21 C -0.177 4.177 22 C -0.185 4.185 23 C -0.047 4.047 24 O -0.321 6.321 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.215 10.172 17.213 22.924 hybrid contribution 1.052 -0.058 -0.283 1.090 sum -10.163 10.114 16.930 22.186 Atomic orbital electron populations 1.21678 0.97311 0.99053 1.00046 1.21794 0.93373 0.99308 1.01457 1.18359 0.93758 0.89057 0.81276 0.98762 1.21559 0.91208 1.39028 1.06824 0.90654 1.25819 1.03505 0.94363 0.94993 1.70057 1.37254 1.38310 1.09908 0.85385 0.78849 0.78471 0.77540 1.18758 1.21366 1.19575 1.46132 1.15166 1.56229 1.17809 1.21007 0.82029 0.79016 0.90094 1.90681 1.52462 1.60384 1.42493 1.22277 0.85818 0.99849 0.94628 1.88042 1.29903 1.75505 1.38065 1.22889 0.93718 0.97489 0.87482 1.23192 0.88939 0.88035 0.99004 0.91903 1.22920 0.96185 1.01263 0.97300 1.22939 0.96251 1.00188 0.99156 1.23663 0.85539 0.97840 0.97691 1.89267 1.17919 1.32841 1.92100 0.94042 0.95950 0.93521 0.93702 0.90947 0.92610 0.75801 0.87859 0.87317 0.91372 0.88817 0.89053 0.88240 0.89579 0.88566 0.88409 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.52 71.98 0.61 -5.33 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.62 2.24 44.24 0.10 14.72 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -29.06 8.73 25.60 0.22 -28.84 16 6 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 7 C 0.01 0.71 5.29 84.66 0.45 1.16 16 8 N -0.92 -53.26 11.29 21.45 0.24 -53.02 16 9 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.70 -29.21 5.02 -446.11 -2.24 -31.45 16 14 C 0.49 20.48 6.47 87.65 0.57 21.04 16 15 O -0.58 -30.52 13.64 16.00 0.22 -30.31 16 16 C 0.05 1.54 6.42 71.23 0.46 2.00 16 17 O -0.40 -13.17 9.87 -127.67 -1.26 -14.43 16 18 C 0.06 1.32 5.54 71.98 0.40 1.72 16 19 C 0.07 1.46 3.57 31.09 0.11 1.57 16 20 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 21 C -0.14 -1.76 6.63 31.61 0.21 -1.55 16 22 C -0.15 -1.75 7.09 31.61 0.22 -1.53 16 23 C 0.03 0.54 7.63 72.49 0.55 1.09 16 24 O -0.40 -11.28 11.35 -148.60 -1.69 -12.96 16 25 H 0.04 1.95 5.65 -2.39 -0.01 1.94 16 26 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 4.10 5.95 -2.39 -0.01 4.08 16 30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.41 13.66 8.54 -92.71 -0.79 12.86 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.09 0.93 7.87 -2.39 -0.02 0.91 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -76.08 332.80 1.59 -74.49 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.22 Total: 23.51 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 4.07 Total: 0.09 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.00 Total: -84.47 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -2.73 Total: -57.70 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -76.08 1.59 -74.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545155635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.922 kcal (2) G-P(sol) polarization free energy of solvation -76.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds