Wall clock time and date at job start Mon Mar 30 2020 01:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.09000 * 109.47314 * 54.99967 * 3 2 1 5 5 C 1.50698 * 109.46914 * 174.99639 * 3 2 1 6 6 H 1.08002 * 120.00250 * 119.99633 * 5 3 2 7 7 C 1.37875 * 120.00114 * 300.00403 * 5 3 2 8 8 N 1.31513 * 120.00397 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47422 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47486 * 119.99640 * 9 7 5 12 12 H 1.48502 * 109.46832 * 239.99473 * 9 7 5 13 13 N 1.46495 * 109.47168 * 294.99682 * 3 2 1 14 14 C 1.34775 * 119.99997 * 85.00259 * 13 3 2 15 15 O 1.21282 * 120.00185 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 3 17 17 O 1.42902 * 109.46909 * 179.97438 * 16 14 13 18 18 C 1.42905 * 113.99766 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.46962 * 180.02562 * 18 17 16 20 20 H 1.08999 * 110.32941 * 305.69879 * 19 18 17 21 21 C 1.54479 * 110.37156 * 183.44890 * 19 18 17 22 22 C 1.54508 * 104.06430 * 217.18988 * 21 19 18 23 23 C 1.54479 * 104.05948 * 0.02562 * 22 21 19 24 24 O 1.44422 * 110.37266 * 67.95048 * 19 18 17 25 25 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 28 28 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 29 29 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 30 30 H 0.96998 * 120.00829 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00290 * 265.00338 * 13 3 2 32 32 H 1.08996 * 109.47005 * 300.00055 * 16 14 13 33 33 H 1.09004 * 109.47194 * 60.00066 * 16 14 13 34 34 H 1.09000 * 109.47032 * 300.00044 * 18 17 16 35 35 H 1.09001 * 109.47159 * 59.99904 * 18 17 16 36 36 H 1.09003 * 110.50988 * 335.83482 * 21 19 18 37 37 H 1.09000 * 110.51142 * 98.54092 * 21 19 18 38 38 H 1.09003 * 110.50966 * 118.64587 * 22 21 19 39 39 H 1.08994 * 110.51268 * 241.21732 * 22 21 19 40 40 H 1.09007 * 110.37068 * 142.81101 * 23 22 21 41 41 H 1.09001 * 110.37077 * 265.03393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4445 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1431 0.8786 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0048 0.8816 1.3819 10 1 6.5986 1.5467 0.1944 11 1 6.3988 1.6170 2.6103 12 1 6.4969 -0.5172 1.4632 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3398 2.6319 -0.4345 16 6 0.0362 3.3376 -2.6549 17 8 -1.2894 3.8567 -2.5304 18 6 -1.7671 4.5182 -3.7036 19 6 -3.1874 5.0311 -3.4572 20 1 -3.8311 4.2176 -3.1226 21 6 -3.7571 5.6744 -4.7409 22 6 -4.5803 6.8760 -4.2253 23 6 -4.4100 6.8168 -2.6911 24 8 -3.1752 6.0963 -2.4820 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8291 -0.0603 2.9503 31 1 2.2718 2.1232 -1.9978 32 1 0.7275 4.1528 -2.8680 33 1 0.0672 2.6128 -3.4686 34 1 -1.1135 5.3582 -3.9386 35 1 -1.7731 3.8177 -4.5387 36 1 -2.9490 6.0148 -5.3885 37 1 -4.3995 4.9696 -5.2687 38 1 -4.1792 7.8104 -4.6180 39 1 -5.6293 6.7664 -4.5002 40 1 -4.3379 7.8231 -2.2782 41 1 -5.2432 6.2801 -2.2373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545155636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:44 Heat of formation + Delta-G solvation = -160.555437 kcal Electronic energy + Delta-G solvation = -21054.747046 eV Core-core repulsion = 17740.625108 eV Total energy + Delta-G solvation = -3314.121937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80826 -40.34744 -38.39541 -36.79720 -34.30544 -33.13802 -32.92315 -31.74014 -29.58875 -28.07085 -26.03156 -24.87553 -22.91165 -22.27288 -21.85681 -21.12431 -18.99842 -18.11218 -17.65837 -17.40891 -16.98018 -16.73986 -16.65192 -16.40113 -15.92120 -15.49876 -14.90993 -14.60238 -14.57369 -14.03194 -13.79277 -13.52852 -13.17708 -12.98222 -12.86625 -12.69713 -12.67953 -12.61715 -12.19864 -12.14844 -12.12882 -12.03843 -11.58786 -11.47095 -11.03913 -10.74825 -10.67653 -10.62275 -10.47989 -9.63062 -8.15265 -6.32960 1.45033 1.45996 1.58008 1.83685 2.07683 2.43715 2.96474 3.11298 3.15475 3.67943 3.89870 3.97131 4.01656 4.17412 4.22106 4.30196 4.35263 4.44989 4.49064 4.52131 4.56964 4.59314 4.76324 4.82031 4.89540 4.95450 5.06113 5.09650 5.18488 5.25537 5.44169 5.56347 5.63111 5.79280 5.89139 5.93741 6.16545 6.19351 6.75686 7.01345 7.34615 7.61350 8.90555 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038519 B = 0.003219 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.731338 B = 8695.025628 C = 8894.625425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.702 5.702 14 C 0.492 3.508 15 O -0.580 6.580 16 C 0.054 3.946 17 O -0.396 6.396 18 C 0.060 3.940 19 C 0.066 3.934 20 H 0.064 0.936 21 C -0.139 4.139 22 C -0.148 4.148 23 C 0.029 3.971 24 O -0.402 6.402 25 H 0.047 0.953 26 H 0.020 0.980 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.122 9.467 -18.737 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.011 0.989 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.797 3.203 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.353 5.353 14 C 0.279 3.721 15 O -0.460 6.460 16 C -0.026 4.026 17 O -0.315 6.315 18 C -0.016 4.016 19 C 0.008 3.992 20 H 0.082 0.918 21 C -0.177 4.177 22 C -0.185 4.185 23 C -0.047 4.047 24 O -0.322 6.322 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.601 9.384 -17.582 23.060 hybrid contribution 1.026 -0.144 0.283 1.074 sum -10.575 9.240 -17.299 22.281 Atomic orbital electron populations 1.21678 0.97210 0.99101 1.00094 1.21782 0.93496 0.99137 1.01482 1.18377 0.93765 0.89159 0.81260 0.98883 1.21615 0.91233 1.38788 1.06773 0.90716 1.25816 1.03474 0.94410 0.95020 1.70067 1.37084 1.38480 1.09894 0.85287 0.78938 0.77818 0.78210 1.18214 1.21220 1.20416 1.46130 1.15168 1.56223 1.17804 1.21007 0.82078 0.78948 0.90114 1.90681 1.52540 1.60313 1.42486 1.22280 0.85812 0.99683 0.94797 1.88045 1.29757 1.75257 1.38453 1.22896 0.94181 0.96811 0.87702 1.23199 0.95909 0.90477 0.89584 0.91804 1.22920 1.00799 0.97943 0.95994 1.22936 1.02092 0.99284 0.94235 1.23653 0.86551 0.97517 0.97006 1.89257 1.40628 1.44537 1.57799 0.93415 0.96054 0.93838 0.93578 0.91029 0.92628 0.75801 0.88115 0.87065 0.91514 0.88673 0.89084 0.88159 0.89650 0.88512 0.88462 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.51 71.98 0.61 -5.21 16 2 C -0.12 -6.04 5.45 30.60 0.17 -5.87 16 3 C 0.28 14.55 2.24 44.25 0.10 14.65 16 4 H -0.01 -0.43 7.58 -2.39 -0.02 -0.44 16 5 C -0.55 -29.03 8.73 25.60 0.22 -28.80 16 6 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 7 C 0.01 0.69 5.29 84.65 0.45 1.13 16 8 N -0.92 -53.27 11.29 21.45 0.24 -53.03 16 9 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.70 -29.19 5.02 -446.10 -2.24 -31.43 16 14 C 0.49 20.46 6.48 87.66 0.57 21.02 16 15 O -0.58 -30.50 13.64 16.00 0.22 -30.28 16 16 C 0.05 1.54 6.42 71.24 0.46 2.00 16 17 O -0.40 -13.16 9.88 -127.67 -1.26 -14.42 16 18 C 0.06 1.32 5.54 71.98 0.40 1.72 16 19 C 0.07 1.45 3.57 31.10 0.11 1.56 16 20 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 21 C -0.14 -1.76 6.63 31.61 0.21 -1.55 16 22 C -0.15 -1.76 7.09 31.61 0.22 -1.54 16 23 C 0.03 0.54 7.63 72.48 0.55 1.09 16 24 O -0.40 -11.40 11.35 -148.60 -1.69 -13.09 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 27 H 0.04 1.98 5.64 -2.39 -0.01 1.97 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 4.03 5.95 -2.39 -0.01 4.01 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.41 13.66 8.54 -92.71 -0.79 12.86 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 0.93 7.87 -2.39 -0.02 0.91 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.36 332.80 1.59 -74.77 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.22 Total: 22.97 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 4.07 Total: 0.21 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.00 Total: -84.45 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -2.73 Total: -57.79 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -76.36 1.59 -74.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545155636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.781 kcal (2) G-P(sol) polarization free energy of solvation -76.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds