Wall clock time and date at job start Mon Mar 30 2020 00:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48503 * 109.47032 * 239.99974 * 3 2 1 5 5 H 1.48495 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47028 * 120.00642 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47469 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47542 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47004 * 179.97438 * 12 11 10 14 14 O 1.21274 * 120.00413 * 0.27039 * 13 12 11 15 15 N 1.34784 * 119.99635 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99971 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47267 * 180.02562 * 16 15 13 18 18 O 1.42899 * 110.45521 * 302.60263 * 17 16 15 19 19 C 1.54516 * 110.51312 * 180.02562 * 17 16 15 20 20 C 1.54477 * 104.06110 * 241.35556 * 19 17 16 21 21 O 1.44434 * 104.80455 * 336.01914 * 20 19 17 22 22 C 1.44421 * 105.27335 * 40.51113 * 21 20 19 23 23 H 0.97000 * 120.00297 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47238 * 59.99991 * 9 7 2 25 25 H 1.09004 * 109.46932 * 300.00369 * 9 7 2 26 26 H 1.08997 * 109.47279 * 59.99491 * 10 9 7 27 27 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 28 28 H 1.08997 * 109.47365 * 59.99446 * 11 10 9 29 29 H 1.09002 * 109.47075 * 299.99821 * 11 10 9 30 30 H 1.09005 * 109.47089 * 59.99653 * 12 11 10 31 31 H 1.09002 * 109.46787 * 299.99995 * 12 11 10 32 32 H 0.96999 * 120.00044 * 0.02562 * 15 13 12 33 33 H 1.09004 * 109.47024 * 300.00310 * 16 15 13 34 34 H 1.09005 * 109.47136 * 59.99926 * 16 15 13 35 35 H 0.96706 * 114.00201 * 59.30315 * 18 17 16 36 36 H 1.08999 * 110.50877 * 359.97438 * 19 17 16 37 37 H 1.08997 * 110.50981 * 122.71074 * 19 17 16 38 38 H 1.09001 * 110.37627 * 94.84591 * 20 19 17 39 39 H 1.08996 * 110.37397 * 217.07958 * 20 19 17 40 40 H 1.09002 * 110.37327 * 200.65887 * 22 21 20 41 41 H 1.09006 * 110.37273 * 78.32115 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 6 2.4745 -6.1500 -0.0005 13 6 1.7210 -7.4550 -0.0005 14 8 0.5083 -7.4551 -0.0060 15 7 2.3949 -8.6223 -0.0005 16 6 1.6625 -9.8910 0.0000 17 6 2.6566 -11.0539 0.0006 18 8 3.5295 -10.9652 -1.1274 19 6 1.9085 -12.4058 0.0005 20 6 2.3549 -13.0818 1.3159 21 8 3.6266 -12.4735 1.6304 22 6 3.4666 -11.0731 1.3159 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8539 -5.0446 -0.8913 29 1 0.8534 -5.0451 0.8886 30 1 3.1006 -6.0923 0.8899 31 1 3.1018 -6.0922 -0.8901 32 1 3.3649 -8.6223 -0.0002 33 1 1.0361 -9.9485 0.8903 34 1 1.0354 -9.9490 -0.8897 35 1 4.0462 -10.1484 -1.1617 36 1 0.8304 -12.2457 0.0006 37 1 2.2066 -13.0072 -0.8583 38 1 1.6332 -12.8836 2.1083 39 1 2.4718 -14.1556 1.1700 40 1 4.4393 -10.6035 1.1694 41 1 2.9153 -10.5668 2.1083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588655810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:12 Heat of formation + Delta-G solvation = -185.512151 kcal Electronic energy + Delta-G solvation = -20421.081690 eV Core-core repulsion = 17105.877548 eV Total energy + Delta-G solvation = -3315.204142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.41961 -40.37139 -37.60290 -36.63613 -35.35378 -34.60414 -32.70397 -31.54103 -30.05638 -27.88292 -26.47327 -24.33758 -23.62387 -21.80609 -21.69438 -21.24568 -18.68065 -18.40702 -17.92026 -17.46135 -16.98619 -16.90752 -16.53456 -16.25759 -16.09381 -15.72075 -14.81427 -14.74700 -14.52453 -14.18883 -13.95193 -13.63176 -13.58224 -13.41867 -13.24862 -12.79271 -12.69030 -12.48439 -12.37558 -12.15200 -12.11377 -11.90724 -11.36418 -11.35575 -11.34210 -11.18046 -10.78969 -10.66400 -10.53907 -10.23172 -8.18169 -6.30410 1.40801 1.44717 1.52566 1.61705 2.05706 2.42463 2.84769 3.04350 3.14469 3.30201 3.61523 3.72432 3.82603 4.05751 4.09622 4.16613 4.21491 4.42813 4.56943 4.58880 4.65434 4.70016 4.70916 4.77369 4.86338 4.87810 4.90195 4.98466 5.20458 5.27667 5.34311 5.40893 5.58027 5.68838 5.79172 5.88950 6.25786 6.43177 6.63112 6.88203 7.21347 7.39249 8.93851 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.053194 B = 0.002433 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.253609 B =11506.896696 C =11677.096973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.098 4.098 12 C -0.128 4.128 13 C 0.514 3.486 14 O -0.585 6.585 15 N -0.719 5.719 16 C 0.103 3.897 17 C 0.099 3.901 18 O -0.556 6.556 19 C -0.145 4.145 20 C 0.040 3.960 21 O -0.393 6.393 22 C 0.019 3.981 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.415 0.585 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.390 0.610 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.841 -26.582 1.401 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.168 4.168 13 C 0.303 3.697 14 O -0.465 6.465 15 N -0.374 5.374 16 C -0.022 4.022 17 C 0.058 3.942 18 O -0.365 6.365 19 C -0.183 4.183 20 C -0.036 4.036 21 O -0.312 6.312 22 C -0.058 4.058 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.253 0.747 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.240 0.760 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.778 -27.183 1.353 28.598 hybrid contribution 0.105 1.673 -0.017 1.676 sum 8.883 -25.511 1.336 27.046 Atomic orbital electron populations 1.70125 1.08077 1.27809 1.51866 1.26100 0.95785 1.03763 0.94819 0.85438 0.78165 0.77702 0.79358 1.18898 1.21157 1.18885 1.21735 0.93761 0.92229 1.50265 0.91522 1.19064 0.94736 0.93870 0.94268 1.21444 0.97783 0.92698 1.01381 1.21256 0.97573 0.93752 1.01000 1.21690 0.98914 0.89186 1.06987 1.21204 0.87743 0.86588 0.74179 1.90714 1.16571 1.88305 1.50875 1.45783 1.10938 1.04706 1.75962 1.21980 0.94936 0.82266 1.02969 1.22762 0.89646 0.94943 0.86885 1.86636 1.58264 1.45841 1.45718 1.22995 1.01425 0.93791 1.00046 1.23639 0.85292 0.99513 0.95135 1.89141 1.34066 1.20842 1.87158 1.24281 1.02158 0.83955 0.95414 0.92867 0.99792 0.99755 0.91967 0.92026 0.93971 0.93886 0.86014 0.86051 0.74699 0.90534 0.91628 0.75953 0.87842 0.89200 0.90628 0.87384 0.86978 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 2 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -31.23 9.11 25.60 0.23 -30.99 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 0.97 4.97 29.85 0.15 1.12 16 10 C -0.10 -3.79 5.15 30.59 0.16 -3.64 16 11 C -0.10 -3.38 4.50 30.59 0.14 -3.25 16 12 C -0.13 -2.82 5.70 29.85 0.17 -2.65 16 13 C 0.51 12.39 7.83 87.65 0.69 13.07 16 14 O -0.59 -20.55 15.98 -3.01 -0.05 -20.60 16 15 N -0.72 -10.46 5.18 -463.07 -2.40 -12.86 16 16 C 0.10 1.56 4.55 86.38 0.39 1.95 16 17 C 0.10 1.20 1.14 -9.78 -0.01 1.19 16 18 O -0.56 -7.32 13.00 -148.98 -1.94 -9.26 16 19 C -0.14 -1.63 6.54 31.61 0.21 -1.42 16 20 C 0.04 0.45 7.63 72.48 0.55 1.00 16 21 O -0.39 -6.46 11.65 -148.98 -1.74 -8.20 16 22 C 0.02 0.22 6.56 72.48 0.48 0.70 16 23 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 24 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 25 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 29 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 30 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.42 2.80 7.25 -92.71 -0.67 2.13 16 33 H 0.08 1.25 8.08 -2.38 -0.02 1.23 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.39 2.33 7.80 -74.05 -0.58 1.75 16 36 H 0.10 0.92 7.73 -2.39 -0.02 0.90 16 37 H 0.09 1.12 8.00 -2.39 -0.02 1.10 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.92 8.09 -2.39 -0.02 0.90 16 41 H 0.08 0.84 7.83 -2.38 -0.02 0.82 16 Total: -1.00 -79.78 339.40 -0.42 -80.20 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -0.23 Total: 5.73 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 3.61 Total: -22.89 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -2.11 Total: -71.58 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -3.72 Total: -38.06 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -79.78 -0.42 -80.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588655810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.311 kcal (2) G-P(sol) polarization free energy of solvation -79.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds