Wall clock time and date at job start Mon Mar 30 2020 00:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99925 * 2 1 4 4 H 1.48495 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47051 * 300.00323 * 3 2 1 6 6 H 1.48504 * 109.47124 * 59.99719 * 3 2 1 7 7 C 1.37870 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00618 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47167 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00199 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99907 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47133 * 180.02562 * 14 13 11 16 16 O 1.42904 * 109.47178 * 64.99912 * 15 14 13 17 17 C 1.42898 * 114.00232 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 15 19 19 H 1.08991 * 110.75153 * 51.52312 * 18 17 16 20 20 C 1.55304 * 110.84611 * 174.99935 * 18 17 16 21 21 C 1.54944 * 100.97800 * 152.50267 * 20 18 17 22 22 O 1.43693 * 105.11450 * 323.61333 * 21 20 18 23 23 C 1.43240 * 109.99409 * 24.36003 * 22 21 20 24 24 H 0.96998 * 120.00433 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47002 * 60.00114 * 9 7 2 26 26 H 1.08998 * 109.47313 * 300.00067 * 9 7 2 27 27 H 1.08998 * 109.47344 * 59.99530 * 10 9 7 28 28 H 1.09005 * 109.47312 * 299.99932 * 10 9 7 29 29 H 0.97000 * 120.00301 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.46907 * 59.99834 * 14 13 11 31 31 H 1.09005 * 109.46940 * 300.00280 * 14 13 11 32 32 H 1.09003 * 109.47135 * 304.99982 * 15 14 13 33 33 H 1.08998 * 109.47195 * 184.99620 * 15 14 13 34 34 H 1.08999 * 109.47464 * 59.99489 * 17 16 15 35 35 H 1.09006 * 109.46705 * 300.00495 * 17 16 15 36 36 H 1.09002 * 111.12488 * 270.44243 * 20 18 17 37 37 H 1.08995 * 111.12730 * 34.56238 * 20 18 17 38 38 H 1.08996 * 110.31114 * 82.48962 * 21 20 18 39 39 H 1.09004 * 110.31323 * 204.65778 * 21 20 18 40 40 H 1.09001 * 109.83319 * 238.81565 * 23 22 21 41 41 H 1.08998 * 109.90329 * 117.88243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0020 12 8 0.2790 -4.9671 0.0030 13 7 2.1658 -6.1343 0.0014 14 6 1.4334 -7.4031 0.0024 15 6 2.4276 -8.5660 0.0021 16 8 3.1710 -8.5575 1.2225 17 6 4.1334 -9.6089 1.3242 18 6 4.8653 -9.5026 2.6636 19 1 4.1550 -9.4356 3.4875 20 6 5.8309 -10.7026 2.8624 21 6 6.9005 -10.0704 3.7882 22 8 7.0322 -8.7128 3.3360 23 6 5.8321 -8.2991 2.6723 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5574 -0.8880 26 1 0.6247 -2.5563 0.8919 27 1 2.8727 -3.6038 0.8909 28 1 2.8713 -3.6047 -0.8891 29 1 3.1358 -6.1343 0.0009 30 1 0.8056 -7.4609 -0.8868 31 1 0.8077 -7.4606 0.8932 32 1 3.1111 -8.4594 -0.8404 33 1 1.8855 -9.5074 -0.0866 34 1 4.8522 -9.5236 0.5092 35 1 3.6270 -10.5722 1.2626 36 1 5.3274 -11.5346 3.3548 37 1 6.2678 -11.0166 1.9145 38 1 6.5645 -10.0925 4.8248 39 1 7.8490 -10.5977 3.6858 40 1 6.0596 -8.0000 1.6491 41 1 5.3798 -7.4653 3.2092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589701792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:23 Heat of formation + Delta-G solvation = -149.379074 kcal Electronic energy + Delta-G solvation = -20334.098101 eV Core-core repulsion = 17020.460807 eV Total energy + Delta-G solvation = -3313.637294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92388 -39.15554 -38.01039 -34.63514 -33.39743 -33.12255 -31.08764 -30.11189 -29.04920 -25.93508 -25.47559 -22.98649 -22.64318 -21.36773 -21.02219 -19.61586 -17.48562 -16.95591 -16.81638 -16.44844 -16.16929 -15.62027 -15.23077 -15.07676 -14.90400 -14.38398 -14.10107 -13.68204 -13.45697 -13.14600 -12.95915 -12.44857 -12.15692 -12.07022 -11.88111 -11.66836 -11.57640 -11.27361 -11.11818 -11.09956 -10.91010 -10.54290 -10.00924 -9.90880 -9.82140 -9.61839 -9.12315 -8.95313 -8.72429 -8.28427 -5.92478 -3.96565 3.14350 3.33485 3.35475 3.42223 3.45844 3.55014 3.63187 4.00913 4.38417 4.44850 4.51085 4.71777 4.77007 4.82282 4.90710 4.92412 5.05423 5.11147 5.15066 5.29069 5.38292 5.42499 5.45309 5.54715 5.61979 5.67385 5.77674 5.93474 6.29124 6.31540 6.64952 6.73916 6.85115 6.95640 7.79082 7.91371 7.96214 8.11643 8.43298 8.84879 9.12544 9.66858 11.18591 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.003024 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.672153 B = 9258.531997 C =10409.410582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.538 6.538 13 N -0.740 5.740 14 C 0.122 3.878 15 C 0.052 3.948 16 O -0.382 6.382 17 C 0.073 3.927 18 C -0.122 4.122 19 H 0.095 0.905 20 C -0.150 4.150 21 C 0.052 3.948 22 O -0.386 6.386 23 C 0.058 3.942 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.399 0.601 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.185 -25.409 3.184 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.413 6.413 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.025 4.025 16 O -0.301 6.301 17 C -0.004 4.004 18 C -0.141 4.141 19 H 0.114 0.886 20 C -0.188 4.188 21 C -0.025 4.025 22 O -0.306 6.306 23 C -0.018 4.018 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.233 0.767 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.274 -25.022 3.354 27.648 hybrid contribution 0.679 0.464 -0.239 0.857 sum 11.954 -24.557 3.115 27.489 Atomic orbital electron populations 1.70010 1.06054 1.26423 1.50437 1.25031 0.94826 0.99239 0.95370 0.86536 0.80033 0.83850 0.77545 1.19730 1.21057 1.21032 1.21275 0.92983 0.91029 1.51062 0.92544 1.18904 0.93203 0.89417 0.98597 1.21853 1.00688 0.91959 1.02470 1.21557 0.88616 0.85695 0.74348 1.90665 1.14508 1.87699 1.48469 1.46120 1.10138 1.05293 1.77889 1.21258 0.93810 0.82255 1.02898 1.22801 0.94225 0.98590 0.86839 1.87969 1.52456 1.51012 1.38682 1.22418 0.90990 0.90651 0.96340 1.22727 0.97504 0.95343 0.98477 0.88644 1.23270 0.96584 0.97833 1.01105 1.23355 0.99088 0.82615 0.97435 1.88434 1.37189 1.28560 1.76383 1.23192 0.84090 0.96539 0.97991 0.93042 0.95857 0.95820 0.90221 0.90327 0.76707 0.90293 0.91001 0.92517 0.91874 0.92832 0.92855 0.89577 0.90097 0.92033 0.89642 0.90950 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.53 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.71 5.64 -27.89 -0.16 -2.87 16 11 C 0.51 10.10 7.83 -10.98 -0.09 10.02 16 12 O -0.54 -13.01 15.98 5.55 0.09 -12.92 16 13 N -0.74 -10.73 5.50 -60.29 -0.33 -11.07 16 14 C 0.12 1.49 6.06 -4.04 -0.02 1.47 16 15 C 0.05 0.45 6.07 37.16 0.23 0.67 16 16 O -0.38 -3.73 10.24 -35.23 -0.36 -4.09 16 17 C 0.07 0.52 5.29 37.16 0.20 0.71 16 18 C -0.12 -0.89 3.25 -88.67 -0.29 -1.18 16 19 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 20 C -0.15 -0.82 6.61 -24.48 -0.16 -0.98 16 21 C 0.05 0.36 7.78 38.18 0.30 0.65 16 22 O -0.39 -4.05 11.36 -35.23 -0.40 -4.45 16 23 C 0.06 0.54 7.36 37.88 0.28 0.82 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.40 4.79 8.47 -40.82 -0.35 4.44 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.34 7.94 -51.93 -0.41 -0.08 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.39 8.04 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -35.68 344.04 -7.38 -43.07 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.03 Total: -1.84 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.25 Total: -3.73 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.40 Total: -38.20 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.67 Total: -21.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.68 -7.38 -43.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589701792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.313 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds