Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47039 * 2 1 4 4 C 1.34221 * 116.99767 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00386 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00033 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.46962 * 300.00573 * 6 4 3 8 8 C 1.53004 * 109.47038 * 60.00021 * 6 4 3 9 9 C 1.53000 * 109.46797 * 58.73466 * 8 6 4 10 10 N 1.46903 * 109.47306 * 179.97438 * 6 4 3 11 11 C 1.47838 * 110.99902 * 187.63015 * 10 6 4 12 12 C 1.54913 * 104.79752 * 213.63999 * 11 10 6 13 13 C 1.55140 * 101.65175 * 37.07009 * 12 11 10 14 14 O 1.42897 * 110.85641 * 82.79934 * 13 12 11 15 15 C 1.50697 * 110.70627 * 205.96587 * 13 12 11 16 16 H 1.08003 * 120.00124 * 116.30353 * 15 13 12 17 17 C 1.37878 * 120.00142 * 296.29820 * 15 13 12 18 18 N 1.31512 * 119.99824 * 7.49754 * 17 15 13 19 19 Si 1.86802 * 119.99987 * 187.49389 * 17 15 13 20 20 H 1.48496 * 109.47121 * 94.98635 * 19 17 15 21 21 H 1.48500 * 109.46613 * 214.98295 * 19 17 15 22 22 H 1.48491 * 109.47149 * 334.98446 * 19 17 15 23 23 C 1.47444 * 110.99478 * 66.78946 * 10 6 4 24 24 H 1.09002 * 109.47243 * 299.99619 * 1 2 3 25 25 H 1.08997 * 109.47492 * 59.99911 * 1 2 3 26 26 H 1.09000 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46969 * 239.99954 * 2 1 3 28 28 H 1.09000 * 109.47242 * 120.00559 * 2 1 3 29 29 H 1.09003 * 109.47187 * 298.74312 * 8 6 4 30 30 H 1.08994 * 109.47153 * 178.73796 * 8 6 4 31 31 H 1.09000 * 109.47683 * 294.48732 * 9 8 6 32 32 H 1.09001 * 109.47457 * 54.48996 * 9 8 6 33 33 H 1.09005 * 109.47222 * 174.48254 * 9 8 6 34 34 H 1.09006 * 110.37508 * 332.46919 * 11 10 6 35 35 H 1.08997 * 110.37635 * 94.80976 * 11 10 6 36 36 H 1.08997 * 110.98896 * 278.98448 * 12 11 10 37 37 H 1.09000 * 111.02587 * 155.17614 * 12 11 10 38 38 H 0.96699 * 113.99861 * 69.73786 * 14 13 12 39 39 H 0.96998 * 120.00129 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.88662 * 242.66280 * 23 10 6 41 41 H 1.09003 * 109.89305 * 3.68775 * 23 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5850 3.4698 -0.8887 8 6 3.4487 3.6840 1.2505 9 6 3.8927 2.9198 2.4994 10 7 5.3877 2.8605 0.0023 11 6 5.9882 4.1989 0.1862 12 6 7.2947 4.1640 -0.6455 13 6 6.8620 3.3205 -1.8735 14 8 6.1956 4.1346 -2.8406 15 6 8.0503 2.6287 -2.4902 16 1 8.1027 1.5499 -2.4987 17 6 9.0706 3.3728 -3.0436 18 7 9.0810 4.6804 -2.9043 19 14 10.4382 2.5234 -3.9911 20 1 10.1184 2.5374 -5.4412 21 1 11.7188 3.2389 -3.7598 22 1 10.5647 1.1191 -3.5256 23 6 5.8878 2.2912 -1.2625 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3614 3.7606 1.2389 30 1 3.8833 4.6835 1.2623 31 1 3.3816 1.9578 2.5377 32 1 4.9700 2.7577 2.4624 33 1 3.6430 3.4996 3.3881 34 1 5.3180 4.9708 -0.1922 35 1 6.2128 4.3727 1.2385 36 1 8.0950 3.6696 -0.0948 37 1 7.5933 5.1680 -0.9470 38 1 6.7754 4.7630 -3.2922 39 1 9.7990 5.2039 -3.2933 40 1 6.4118 1.3557 -1.0665 41 1 5.0559 2.1143 -1.9443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = -135.481252 kcal Electronic energy + Delta-G solvation = -22392.268960 eV Core-core repulsion = 19079.234321 eV Total energy + Delta-G solvation = -3313.034639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47292 -38.48481 -36.34727 -35.36679 -32.97754 -32.12839 -31.64189 -29.44381 -28.02916 -26.39789 -24.50412 -23.37699 -22.36343 -20.84250 -19.51752 -19.33382 -17.29950 -17.06483 -16.62433 -15.99953 -15.24008 -15.00298 -14.86599 -14.23218 -13.99984 -13.55093 -13.23986 -13.15536 -12.87526 -12.62098 -12.03425 -11.92970 -11.84133 -11.77156 -11.65894 -11.38437 -11.28043 -10.99365 -10.95772 -10.74046 -10.55416 -10.44879 -10.42917 -10.23199 -9.93875 -9.82604 -9.18571 -8.67328 -8.08290 -7.68810 -6.19409 -4.26310 2.55193 2.76237 3.24480 3.31986 3.36653 4.32413 4.53247 4.80179 4.85561 4.95274 4.99783 5.06855 5.20531 5.27047 5.43593 5.60139 5.65671 5.67731 5.81613 5.84861 5.87044 6.03295 6.05803 6.10634 6.21711 6.31628 6.39503 6.44953 6.59036 6.66097 7.06748 7.09201 7.43088 7.55251 7.62212 7.64957 7.83477 8.12743 8.15420 8.75862 9.38662 9.43375 10.86425 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.005076 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.051837 B = 5515.301840 C = 6076.945101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.468 3.532 5 O -0.485 6.485 6 C 0.090 3.910 7 H 0.078 0.922 8 C -0.113 4.113 9 C -0.148 4.148 10 N -0.510 5.510 11 C 0.043 3.957 12 C -0.125 4.125 13 C 0.233 3.767 14 O -0.592 6.592 15 C -0.532 4.532 16 H 0.063 0.937 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.068 3.932 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.379 0.621 39 H 0.265 0.735 40 H 0.086 0.914 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.267 -2.230 7.349 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.309 3.691 5 O -0.370 6.370 6 C -0.021 4.021 7 H 0.095 0.905 8 C -0.150 4.150 9 C -0.205 4.205 10 N -0.235 5.235 11 C -0.084 4.084 12 C -0.163 4.163 13 C 0.192 3.808 14 O -0.400 6.400 15 C -0.571 4.571 16 H 0.081 0.919 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.059 4.059 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.229 0.771 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.348 -3.090 7.924 15.827 hybrid contribution 1.062 0.209 -1.442 1.803 sum -12.286 -2.881 6.482 14.186 Atomic orbital electron populations 1.21787 0.92904 1.02682 1.03388 1.22943 0.95057 0.80828 1.02471 1.86489 1.25122 1.31842 1.84700 1.23673 0.80095 0.92854 0.72497 1.90660 1.60071 1.42659 1.43588 1.21443 0.91457 0.88923 1.00232 0.90480 1.21593 1.00896 0.99460 0.93088 1.21736 1.03374 0.99147 0.96251 1.63549 1.01464 1.22373 1.36156 1.23129 0.97265 0.88161 0.99802 1.23127 0.93975 1.02229 0.97013 1.19780 0.88787 0.86684 0.85517 1.86095 1.41437 1.55214 1.57280 1.21600 1.03611 0.93741 1.38135 0.91899 1.25006 0.97702 0.95001 0.95495 1.69798 1.34057 1.04979 1.44630 0.86474 0.80913 0.79795 0.80230 1.20576 1.21151 1.19711 1.22826 0.97519 0.98544 0.87007 0.91601 0.91541 0.90496 0.91412 0.91465 0.90923 0.90255 0.93727 0.90643 0.92996 0.94148 0.91587 0.91667 0.90273 0.77117 0.92470 0.89590 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 37.16 0.38 -0.89 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.36 -5.38 10.14 -39.23 -0.40 -5.78 16 4 C 0.47 8.15 5.58 36.01 0.20 8.36 16 5 O -0.49 -9.82 15.12 -18.75 -0.28 -10.11 16 6 C 0.09 1.53 1.88 -68.86 -0.13 1.40 16 7 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 8 C -0.11 -1.53 5.28 -26.73 -0.14 -1.67 16 9 C -0.15 -1.97 9.47 37.16 0.35 -1.62 16 10 N -0.51 -10.11 3.96 -224.67 -0.89 -10.99 16 11 C 0.04 0.83 5.22 -2.30 -0.01 0.82 16 12 C -0.12 -2.88 5.45 -24.59 -0.13 -3.01 16 13 C 0.23 5.83 0.87 -89.95 -0.08 5.75 16 14 O -0.59 -15.23 13.12 -35.23 -0.46 -15.69 16 15 C -0.53 -14.53 8.20 -34.44 -0.28 -14.81 16 16 H 0.06 1.74 7.56 -52.48 -0.40 1.34 16 17 C 0.07 1.86 5.19 -17.82 -0.09 1.77 16 18 N -0.90 -23.80 10.71 55.43 0.59 -23.21 16 19 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.07 1.58 4.83 -2.83 -0.01 1.56 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.03 6.60 -51.93 -0.34 0.68 16 31 H 0.04 0.61 7.39 -51.93 -0.38 0.23 16 32 H 0.07 1.15 7.33 -51.93 -0.38 0.77 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.75 7.23 -51.93 -0.38 0.38 16 35 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.06 1.58 8.04 -51.93 -0.42 1.16 16 37 H 0.08 1.92 7.49 -51.93 -0.39 1.53 16 38 H 0.38 9.86 7.42 45.56 0.34 10.20 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.09 2.11 7.65 -51.93 -0.40 1.72 16 41 H 0.04 0.92 7.18 -51.93 -0.37 0.55 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -28.97 327.62 -7.29 -36.26 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.05 Total: 10.08 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 0.28 Total: -1.38 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.30 Total: -34.20 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.14 Total: -31.57 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.97 -7.29 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.223 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds